ID:

rno-mir-295-2

 Coordinate:

chr1:66133312-66133392 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.5
mature
  1. chr1:64536633-64536655 -
  2. chr1:66133322-66133344 -
star
  1. chr1:64536666-64536691 -
  2. chr1:66133355-66133380 -

Sense Strand Reads

TGATGCTGTGTGGAAGAAGGCATCCGGGACTTCAATCAACCTGACTTGTTCATTTTGGTGAGACTCAAATGTGGGGCACACTTCTGGATTATGCGTAGAAAGTGCTACTACTTTTGGGTGTCTCCTGTGGGCACTACTCACAGATCCCTGAACCTTTAAAATTACTGTAATAGGCCTGAGC
***********************************************((((((...((.((.(((((((.(((((((((..(((((.........))))).))))).)))).))))))).)).)).))))))....********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
..................................................................................................AAAGTGCTACTACTTTTGGGTGT............................................................ 23 0 2 87.00 174 172 0 2
..................................................................................................AAAGTGCTACTACTTTTGGGTGA............................................................ 23 1 2 8.00 16 16 0 0
...................................................................................................AAGTGCTACTACTTTTGGGTGT............................................................ 22 0 2 7.50 15 14 0 1
..................................................................................................AAAGTGCTACGACATTTGGGTGT............................................................ 23 2 2 5.00 10 2 8 0
..................................................................................................AAAGTGCTACTACTTTTGGGTGTAT.......................................................... 25 1 2 4.50 9 9 0 0
..................................................................................................AAAGTGCTACTACTTTTGGGTGTTAT......................................................... 26 3 2 3.00 6 6 0 0
..................................................................................................AAAGTGCTACTACTTTTGGGTGTAA.......................................................... 25 2 2 3.00 6 6 0 0
..................................................................................................AAAGTGCTACTACTTTTGGGTGTTA.......................................................... 25 2 2 2.00 4 4 0 0
.................................................................................................AAAAGTGCTACTACTTTTGGGTGT............................................................ 24 1 2 2.00 4 4 0 0
..................................................................................................AAAGTGCTACTACTTTTGGGTGTTT.......................................................... 25 1 2 2.00 4 4 0 0
..................................................................................................AAAGTGCTACTACTTTTGGGTGTT........................................................... 24 1 2 2.00 4 3 0 1
..................................................................................................AAAGTGCTACTACTTTTGGGTGTTTT......................................................... 26 2 2 2.00 4 4 0 0
..................................................................................................AAAGTGCTACTACTTTTGGGTG............................................................. 22 0 2 1.50 3 3 0 0
...................................................................................................AAGTGCTACTACTTTTGGGTGTAT.......................................................... 24 1 2 1.50 3 3 0 0
..................................................................................................AAAGTGCTACTACTTTTGGGTAT............................................................ 23 1 2 1.50 3 3 0 0
..................................................................................................AAAGTGCTACGACATTTGGGTGTCG.......................................................... 25 3 2 1.00 2 2 0 0
..................................................................................................AAAGAGCTACTACTTTTGGGTGT............................................................ 23 1 2 1.00 2 2 0 0
...................................................................................................AAGTGCTACTACTTTTGGGTCG............................................................ 22 2 3 1.00 3 0 3 0
...................................................................................................AAGTGCTACTACTTTTGGGTGTT........................................................... 23 1 2 1.00 2 2 0 0
..................................................................................................AAAGTGCTACTACTTTTGGGT.............................................................. 21 0 2 1.00 2 2 0 0
...................................................................................................AAGTGCTACTACTTTTGGGTGA............................................................ 22 1 2 1.00 2 2 0 0
..............................................................ACTCAAATGTGGGGCACACTTCTGGA............................................................................................. 26 0 2 1.00 2 2 0 0
...................................................................................................AAGTGCTACTACTTTTGGGTGTTA.......................................................... 24 2 2 0.50 1 1 0 0
..................................................................................................AAAGTGCTACTACTTTTGGGGGT............................................................ 23 1 2 0.50 1 1 0 0
..................................................................................................AAAGGGCTACTACTTTTGGGTGA............................................................ 23 2 2 0.50 1 1 0 0
..................................................................................................AAAGTGCAACTACTTTTGGGTGTTT.......................................................... 25 2 2 0.50 1 1 0 0
..................................................................................................AAAGTGCTACTACTATTGGGTGTAA.......................................................... 25 3 2 0.50 1 1 0 0
..................................................................................................AAAGTGCTCCTACTTTTGGGTTT............................................................ 23 2 2 0.50 1 1 0 0
..................................................................................................AAAGTGCTACTACTTTTGGGTGGAT.......................................................... 25 2 2 0.50 1 1 0 0
..................................................................................................AAAGTGCTACTCCTTTTGGGTGT............................................................ 23 1 2 0.50 1 1 0 0
..................................................................................................AAAGTGCTACTACTTTTGGGTGTC........................................................... 24 0 2 0.50 1 1 0 0
.................................................................................................AAACGTGCTACTACTTTTGGGTGT............................................................ 24 2 2 0.50 1 1 0 0
..................................................................................................AAAGCGCTACTACTTTTGGGTGT............................................................ 23 1 2 0.50 1 1 0 0
...................................................................................................AAGTGCTACTACTTTTGGGTGTTT.......................................................... 24 1 2 0.50 1 1 0 0
..................................................................................................AACGTGCTACTACATTTGGGTGT............................................................ 23 2 2 0.50 1 1 0 0
..................................................................................................AAAGTGCTACTACTTTTGGGTGTTAA......................................................... 26 3 2 0.50 1 1 0 0
..................................................................................................AAAGTGCTACTACCTTTGGGTGA............................................................ 23 2 2 0.50 1 1 0 0
..................................................................................................AAAGTGCTACGACCTTTGGGTGT............................................................ 23 2 2 0.50 1 0 1 0
..................................................................................................AAAGTGCTCCTACTTTTGGGTGTTTT......................................................... 26 3 2 0.50 1 1 0 0
..................................................................................................AAAGTGCTACTACTTTTGGGTGC............................................................ 23 1 2 0.50 1 1 0 0
...................................................................................................AAGTGCTACTACTTTTGGGTGTA........................................................... 23 1 2 0.50 1 1 0 0
..................................................................................................AAAGTGCTACGACATTTGGGTGC............................................................ 23 3 2 0.50 1 1 0 0
..................................................................................................AATGTGCTACTACTTTTGGGTGT............................................................ 23 1 2 0.50 1 1 0 0
..................................................................................................AAAGTGCTACGACATTCGGGTGT............................................................ 23 3 2 0.50 1 0 1 0
..................................................................................................AAAGTGCTACTACTTTTGGGTGAAG.......................................................... 25 3 3 0.33 1 1 0 0
..................................................................................................AAAGAGCTACTACTTTTGGGAGA............................................................ 23 3 7 0.14 1 1 0 0

Anti-sense strand reads

ACTACGACACACCTTCTTCCGTAGGCCCTGAAGTTAGTTGGACTGAACAAGTAAAACCACTCTGAGTTTACACCCCGTGTGAAGACCTAATACGCATCTTTCACGATGATGAAAACCCACAGAGGACACCCGTGATGAGTGTCTAGGGACTTGGAAATTTTAATGACATTATCCGGACTCG
*********************************************((((((...((.((.(((((((.(((((((((..(((((.........))))).))))).)))).))))))).)).)).))))))....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:30 PM