ID:

rno-mir-294

 Coordinate:

chr1:64536746-64536816 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.1 -36.8 -36.8

Sense Strand Reads

ATTGAGAGATTGAATTGCAGGCATGAATGGAGGATCTTGGAAAAACCACCATAGCCATGCTCAAAATGGAGGCCCTATCTAAGCTTTTAAGTAGAAAGTGCTTCCATTTTGTGTGTTGCTGTGTGGAAGAAGGCATCCGGGACTTCAATCAACCCGACTTGCTCATTTTGG
*******************************************..((((.(((((.((((.((((((((((((.((.(((..(((....)))))).)).)))))))))))).)))).))))))))).....**************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
..............................................................................................AAAGTGCTTCCATTTTGTGTGT....................................................... 22 0 1 78.00 78 77 0 1
..............................................................................................AAAGTGCTTCCATTTTGTGTGTT...................................................... 23 0 1 13.00 13 13 0 0
..........................................................GCTCAAAATGGAGGCCCTATCT........................................................................................... 22 0 1 10.00 10 10 0 0
..............................................................................................AAAGTGCTTCCATTTTGTGTGTTT..................................................... 24 1 1 6.00 6 6 0 0
..............................................................................................AAAGTGCTTCCATTTTGTGTGTCG..................................................... 24 1 1 6.00 6 0 6 0
...............................................................................................AAGTGCTTCCATTTTGTGTGT....................................................... 21 0 1 4.00 4 4 0 0
..............................................................................................AAAGTGCTTCCATTTTGTGTGA....................................................... 22 1 1 4.00 4 3 0 1
...............................................................................................AAGTGCTTCCATTTTGTGTGTTT..................................................... 23 1 1 3.00 3 3 0 0
..............................................................................................AAAGTGCTTCCATTTTGTGTGTTTT.................................................... 25 2 1 3.00 3 3 0 0
..............................................................................................AAAGTGCTTCCATTTTGTGTG........................................................ 21 0 1 3.00 3 3 0 0
..............................................................................................AAAGTGCTTCCATTTTGTGTGTAT..................................................... 24 2 3 3.00 9 9 0 0
..............................................................................................AAAGTGCTTCCATTTTGTGTGTAA..................................................... 24 2 2 2.50 5 5 0 0
..............................................................................................AAAGTGCTTCCCTTTTGTGTGTCG..................................................... 24 2 2 2.50 5 0 5 0
..........................................................GCTCAAAATGGAGGCCCTATCA........................................................................................... 22 1 1 2.00 2 2 0 0
..............................................................................................AAAGTGCTTCCATTTTGTGTGTTAT.................................................... 25 2 1 2.00 2 2 0 0
..............................................................................................AAAGTGCTTCCATTTTGTGTGTA...................................................... 23 1 2 2.00 4 4 0 0
..........................................................GCTCAAAATGGAGGCCCTATCTAAA........................................................................................ 25 1 1 2.00 2 2 0 0
..............................................................................................AAAGCGCTTCCATTTTGTGTGTT...................................................... 23 1 1 1.00 1 1 0 0
..............................................................................................AAAGTGCTTCCATTTTGTGTGTATAT................................................... 26 3 2 1.00 2 2 0 0
..............................................................................................AAAGGGCTTCCATTTTGTGTGT....................................................... 22 1 1 1.00 1 1 0 0
...........................................................CTCAAAATGGAGGCCCTATCT........................................................................................... 21 0 1 1.00 1 1 0 0
..............................................................................................AAAGTGCTTCAATTTTGTGTGT....................................................... 22 1 1 1.00 1 1 0 0
..........................................................GCTCAAAATGGAGGCCCTATCAT.......................................................................................... 23 2 1 1.00 1 1 0 0
..............................................................................................AAAGTGCTTCCATTTTGTGTGTTA..................................................... 24 1 1 1.00 1 1 0 0
..............................................................................................AAAGTGCTTCCATTTTGTGTGG....................................................... 22 1 1 1.00 1 1 0 0
..........................................................GCTCAAAATGGAGGCCCTATCTT.......................................................................................... 23 1 1 1.00 1 1 0 0
...................................................................................................GCTTCCATTTTGTGTGTT...................................................... 18 0 1 1.00 1 1 0 0
..........................................................GCTCAAAATGGAGGCCCTATCTA.......................................................................................... 23 0 1 1.00 1 1 0 0
..............................................................................................AAAGTGCTTCCATTTTGTGTGTCC..................................................... 24 2 1 1.00 1 0 1 0
..............................................................................................AAAGCGCTTCCCTTTTGTGTGTCG..................................................... 24 3 2 0.50 1 0 1 0
..............................................................................................AAAGTGCTTCCCTTTTGTGTGT....................................................... 22 1 2 0.50 1 1 0 0
..............................................................................................AAAGAGCTTCCATTTTGTGTGT....................................................... 22 1 2 0.50 1 1 0 0
..............................................................................................AAACTGCTTCCATTTTGTGTGT....................................................... 22 1 2 0.50 1 1 0 0
..............................................................................................AAAGTGCTTCCACTTTGTGTGT....................................................... 22 1 2 0.50 1 1 0 0
.............................................................................................AAAAGTGCTTCCATTTTGTGT......................................................... 21 1 3 0.33 1 1 0 0
..............................................................................................AAAGAGCTTCCATTTTGTGTGTTT..................................................... 24 2 3 0.33 1 1 0 0
................................................................................................AGTGCTTCCCTTTTGTGTGT....................................................... 20 1 5 0.20 1 1 0 0
..............................................................................................AAAGAGCTTCCCTTTTGTGTGTCG..................................................... 24 3 6 0.17 1 0 1 0
............................................................TCAAAATGGAGGCCCTATCTTTC........................................................................................ 23 3 7 0.14 1 1 0 0

Anti-sense strand reads

TAACTCTCTAACTTAACGTCCGTACTTACCTCCTAGAACCTTTTTGGTGGTATCGGTACGAGTTTTACCTCCGGGATAGATTCGAAAATTCATCTTTCACGAAGGTAAAACACACAACGACACACCTTCTTCCGTAGGCCCTGAAGTTAGTTGGGCTGAACGAGTAAAACC
****************************************..((((.(((((.((((.((((((((((((.((.(((..(((....)))))).)).)))))))))))).)))).))))))))).....******************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:29 PM