ID:

rno-mir-292

 Coordinate:

chr1:64538119-64538200 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.9 -33.7 -33.3

Sense Strand Reads

GGACTTTGGGTGTGCTGTAGATGAAGTGTCCCGCATTAACCCTTGACGTCCAACCTGTGATACTCAAACTGGGGGCTCTTTTGGGTTTTCTTTGGAAGAAAAGTGCCGCCAGGTTTTGAGTGTTACCGATTGAGAACTGCTGCAAAGCTAGGCTCTAATGACTCATGTGTTACCACTTGATG
**********************************************..(((((...((((((((((((((((.(((.((((....(((((....))))))))).))).))))..))))))))))))...))).))...******************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
...................................................................................................AAAGTGCCGCCAGGTTTTGAGTGT........................................................... 24 0 1 190.00 190 170 19 1
....................................................................................................AAGTGCCGCCAGGTTTTGAGTGT........................................................... 23 0 1 81.00 81 75 6 0
.............................................................ACTCAAACTGGGGGCTCTTTTGT.................................................................................................. 23 1 1 31.00 31 31 0 0
...................................................................................................AAAGTGCCGCCAGGTTTTGAGTG............................................................ 23 0 1 15.00 15 15 0 0
...................................................................................................AAAGTGCCGCCAGGTTTTGAGT............................................................. 22 0 1 12.00 12 10 0 2
.............................................................ACTCAAACTGGGGGCTCTTTT.................................................................................................... 21 0 1 12.00 12 12 0 0
...................................................................................................AAAGTGCCGCCAGGTTTTGAGTGA........................................................... 24 1 1 6.00 6 5 0 1
.....................................................................................................AGTGCCGCCAGGTTTTGAGTG............................................................ 21 0 1 6.00 6 6 0 0
.............................................................ACTCAAACTGGGGGCTCTTTTGA.................................................................................................. 23 1 1 5.00 5 5 0 0
....................................................................................................AAGTGCCGCCAGGTTTTGAGTG............................................................ 22 0 1 5.00 5 5 0 0
.............................................................ACTCAAACTGGGGGCTCTTTTG................................................................................................... 22 0 1 4.00 4 4 0 0
.....................................................................................................AGTGCCGCCAGGGTTTGAGTGT........................................................... 22 1 1 4.00 4 0 4 0
.............................................................ACTCAAACTGGGGGCTCTTTTAT.................................................................................................. 23 2 1 4.00 4 4 0 0
...................................................................................................AAAGTGCCGCCAGGTTTTGAGTGC........................................................... 24 1 1 4.00 4 4 0 0
.............................................................ACTCAAACTGGGGGCTCTTTAAG.................................................................................................. 23 2 1 4.00 4 4 0 0
..................................................................................................AAAAGTGCCGCCAGGTTTTGAGTGT........................................................... 25 0 1 3.00 3 3 0 0
....................................................................................................AAGTGCCGCCAGGTTTTGAGTGTT.......................................................... 24 0 1 3.00 3 3 0 0
...................................................................................................AAAGTGCCGCCAGGTTTTGAGCGT........................................................... 24 1 1 3.00 3 3 0 0
......................................................................................................GTGCCGCCAGGTTTTGAGTGT........................................................... 21 0 1 3.00 3 3 0 0
...................................................................................................AAAGTGCCGCCAGGTTTTGAGAGT........................................................... 24 1 1 3.00 3 2 1 0
...................................................................................................AAAGTGCCGCCCGGTTTTGAGTGT........................................................... 24 1 1 2.00 2 2 0 0
.............................................................ACTCAAACTGGGGGCTCTTTTAA.................................................................................................. 23 2 1 2.00 2 2 0 0
....................................................................................................AAGTGCCGCCAGGTTTTGAGT............................................................. 21 0 1 2.00 2 2 0 0
.............................................................ACTCAAACTGGGGGCTCTTTTGAAT................................................................................................ 25 2 1 2.00 2 2 0 0
.............................................................ACTCAAACTGGGGGCTCTTT..................................................................................................... 20 0 1 2.00 2 2 0 0
...................................................................................................AAAGTGCCGCCAGGTTTTGAGTT............................................................ 23 1 1 2.00 2 2 0 0
.............................................................ACTCAAACTGGGGGCTCTTTTAAA................................................................................................. 24 3 1 2.00 2 2 0 0
..............................................................CTCAAACTGGGGGCTCTTTAG................................................................................................... 21 1 1 2.00 2 2 0 0
.............................................................ACTCAAACTGGGGGCTCTTTTA................................................................................................... 22 1 1 2.00 2 2 0 0
...................................................................................................AAAGTGCCGCAAGGTTTTGAGTGT........................................................... 24 1 1 2.00 2 2 0 0
...................................................................................................AAAGGGCCGCCAGGTTTTGAGTGT........................................................... 24 1 1 2.00 2 2 0 0
....................................................................................................AAGTGCCGCCAGGTTTTGAGTGTTT......................................................... 25 1 1 2.00 2 2 0 0
...................................................................................................AAAGTGCCGCCAGGTTTTGAGTA............................................................ 23 1 1 2.00 2 2 0 0
.............................................................ACTCAAACTGGGGGCTCTT...................................................................................................... 19 0 1 1.00 1 1 0 0
....................................................................................................................TGACTGTTATCGATTGACAACTGC.......................................... 24 3 1 1.00 1 0 0 1
....................................................................................................AAGTGCCGCCAGGTTTTGAGTGTA.......................................................... 24 1 1 1.00 1 1 0 0
.............................................................ACTCAAACTGGGGGCTCTTTTGTTTT............................................................................................... 26 2 1 1.00 1 1 0 0
.............................................................ACTAAAACTGGGGGCTCTTTTGT.................................................................................................. 23 2 1 1.00 1 1 0 0
.............................................................ACTCAAACTGAGGGCTCTTTTGT.................................................................................................. 23 2 1 1.00 1 1 0 0
.............................................................AATCAAACTGGGGGCTCTTTT.................................................................................................... 21 1 1 1.00 1 0 0 1
...................................................................................................CAAGTGCCGCCAGGTTTTGAGCGT........................................................... 24 2 1 1.00 1 1 0 0
.............................................................ACTCAAACTGGGGGCTCTTTTGG.................................................................................................. 23 0 1 1.00 1 1 0 0
.............................................................ACTCAAACTGGGGGCTCTTTTGAA................................................................................................. 24 2 1 1.00 1 1 0 0
.....................................................................................................AGTGCCGCCACGTTTTGAGTGT........................................................... 22 1 1 1.00 1 1 0 0
...................................................................................................AAAGTGCCGCCAGGTTTTGAGA............................................................. 22 1 1 1.00 1 1 0 0
.............................................................ACTCAAACTGGGGGCTCTTTTGGTAA............................................................................................... 26 3 1 1.00 1 1 0 0
....................................................................................................AAGTGCCGTCAGGTTTTGAGTGT........................................................... 23 1 1 1.00 1 0 0 1
.....................................................................................................AGTGCCGCCAGGTTTTGAGTGT........................................................... 22 0 1 1.00 1 1 0 0
...................................................................................................AAAGTGCCGCCAGCTTTTAAGTGT........................................................... 24 2 1 1.00 1 0 1 0
....................................................................................................AAGCGCCGCCAGGTTTTGAGTGT........................................................... 23 1 1 1.00 1 1 0 0
...................................................................................................AAAGTGCCGCCAGGTTTTGAGGGT........................................................... 24 1 1 1.00 1 1 0 0
....................................................................................................AAGTGCCGCCAGGTTTTGAGTAT........................................................... 23 1 1 1.00 1 1 0 0
...................................................................................................AAAGTGCCGCCAGGTTTTGA............................................................... 20 0 1 1.00 1 0 0 1
....................................................................................................AATTGCCGCCAGGTTTTGAGTGA........................................................... 23 2 1 1.00 1 0 0 1
.............................................................ACTCAAACTGGGGGCTCTTTTT................................................................................................... 22 1 1 1.00 1 1 0 0
...................................................................................................AAAGCGCCGCCAGGTTTTGAGTGT........................................................... 24 1 1 1.00 1 0 1 0
....................................................................................................AAGTGCCGCCAGGTTTTGAGA............................................................. 21 1 1 1.00 1 1 0 0
.............................................................ACTCAAACTGGGGGCTCTTTTAATTTT.............................................................................................. 27 3 1 1.00 1 1 0 0
...............................................................TCAAACTGGGGGCTCTTTT.................................................................................................... 19 0 1 1.00 1 1 0 0
.............................................................ACTCAAACTGGGGACTCTTTTGT.................................................................................................. 23 2 1 1.00 1 1 0 0
.............................................................ACTCAAACTGGGGGATCTTTTGT.................................................................................................. 23 2 1 1.00 1 1 0 0
.............................................................ACTCAAACTGGGGGCTCTTTTGTT................................................................................................. 24 2 1 1.00 1 1 0 0
.............................................................ACTCAAACTGGGGGCTCTTTA.................................................................................................... 21 1 1 1.00 1 1 0 0
..............................................................CTCAAACTGGGGGCTCTTTTGTA................................................................................................. 23 2 1 1.00 1 1 0 0
...................................................................................................AAAGTGCCGCCCGGCTTTGAGTGT........................................................... 24 2 1 1.00 1 1 0 0
...................................................................................................AAAGTGCCGCCAGGTTTTGCGTA............................................................ 23 2 1 1.00 1 1 0 0
....................................................................................................AAGTGCCGCCGGGTTTTGAGTGT........................................................... 23 1 1 1.00 1 1 0 0
..................................................................................................AAAAGAGCCGCCAGGTTTTGAGTGT........................................................... 25 1 1 1.00 1 1 0 0
...................................................................................................AAAGTACCGCCAGGTTTTGAGTGT........................................................... 24 1 1 1.00 1 1 0 0
....................................................................................................AAGTGCCGCCAGGTTTTGCGTG............................................................ 22 1 1 1.00 1 1 0 0
...................................................................................................AAAGTGCCGCCAGGTTTTGAGTAA........................................................... 24 2 1 1.00 1 1 0 0
....................................................................................................AAGTGCCGCCAGGCTTTGAGTGT........................................................... 23 1 1 1.00 1 1 0 0
.....................................................................................................AGTGCCGCCAGGGTTTGAGGGT........................................................... 22 2 1 1.00 1 0 1 0
...................................................................................................ACAGTGCCGCCAGGTTTTGAGTGT........................................................... 24 1 1 1.00 1 1 0 0
............................................................AACTCAAACTGGGGGCTCTTTTGT.................................................................................................. 24 2 1 1.00 1 1 0 0
....................................................................................................AAGTGCCGCCAGGTTTTGCGTGTAT......................................................... 25 3 1 1.00 1 1 0 0
...................................................................................................AACGTGCCGCCCGGTTTTGAGTGT........................................................... 24 2 1 1.00 1 1 0 0
...................................................................................................AAGGTGCCGCCCGGTTTTGAGTGA........................................................... 24 3 2 0.50 1 1 0 0
.............................................................ACTCAAACTGGGGGCTCTTTATA.................................................................................................. 23 3 4 0.50 2 2 0 0
..............................................................CTCAAACTGGGGGCTCTTTTGTTT................................................................................................ 24 2 2 0.50 1 1 0 0
.............................................................ACTCAAACTGGGGGCTCTTTTATT................................................................................................. 24 3 2 0.50 1 1 0 0
...................................................................................................CAAGTGCCACCAGGTTTTGAGTGT........................................................... 24 2 2 0.50 1 1 0 0
.............................................................ACTCAAACTGGGGGCTCTTTAAA.................................................................................................. 23 3 5 0.20 1 1 0 0

Anti-sense strand reads

CCTGAAACCCACACGACATCTACTTCACAGGGCGTAATTGGGAACTGCAGGTTGGACACTATGAGTTTGACCCCCGAGAAAACCCAAAAGAAACCTTCTTTTCACGGCGGTCCAAAACTCACAATGGCTAACTCTTGACGACGTTTCGATCCGAGATTACTGAGTACACAATGGTGAACTAC
********************************************..(((((...((((((((((((((((.(((.((((....(((((....))))))))).))).))))..))))))))))))...))).))...********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
...................................................................................................TTTCACGGGGGTGCCAAACTCA............................................................. 22 3 5 0.40 2 2
....................................................................................................TTCACGGGGGTGCCAAACTCA............................................................. 21 3 13 0.08 1 1

Generated: 04/30/2015 at 05:29 PM