ID:

rno-mir-291b

 Coordinate:

chr1:64537831-64537938 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.3 -35.0 -35.0
mature
star
  1. chr1:64537890-64537910 -
  2. chr1:64538455-64538475 -

Sense Strand Reads

ATATTAAAAAGGAGCTGGGAAGCCGGCCTAGGCCTGGGAGGTGCTGACCTCGGATCTTGGAAGTTGGAACACAGGGTCCATCAAAGTGGAGGCCCTCTCCGTGGCTTGGCGGGAAAGTGCATCCATTTTGTTAGTCTCTGTGTCCCGCTGGACTCACCTGCCTGCCAGAGGTGGATTCCTTTACTACAGGAGGCTAGTTTAAGTCATG
***************************************************************.(((.((((((((.....(((((((((.((.((.(((((......)))))..)).)).))))))))).....)))))))).)))...********************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
.................................................................................................................AAAGTGCATCCATTTTGTTAGT......................................................................... 22 0 1 21.00 21 21 0
.................................................................................................................AAAGTGCATCCATTTTGTTAG.......................................................................... 21 0 1 7.00 7 7 0
.................................................................................................................AAAGTGCATCCATTTTGTTAGTT........................................................................ 23 1 1 2.00 2 2 0
.................................................................................................................AAAGTGCATCCATTTTGTTAGTTAT...................................................................... 25 3 1 1.00 1 1 0
.................................................................................................................AAAGTGCATCCATTTTGTTAGTGT....................................................................... 24 1 1 1.00 1 1 0
.................................................................................................................AAAGTGCATCCATCTTGTTAG.......................................................................... 21 1 1 1.00 1 1 0
.................................................................................................................AAAGTGCATCCATTTTGTTAGTA........................................................................ 23 1 1 1.00 1 1 0
.................................................................................................................AAAGGGCATCCATTTTGTTAGT......................................................................... 22 1 1 1.00 1 1 0
.................................................................................................................AAGGTGCATCCATTTTGTTAGT......................................................................... 22 1 1 1.00 1 0 1
.................................................................................................................AAAGAGCATCCATTTTGTTAGT......................................................................... 22 1 1 1.00 1 1 0
..............................................................................CATCAAAGTGGAGGCCCTCTCAA........................................................................................................... 23 2 2 0.50 1 1 0
..............................................................................CATCAAAGTGGAGGCCCTCTC............................................................................................................. 21 0 2 0.50 1 1 0
..............................................................................CATCAAAGTGGAGGCCCTCTCA............................................................................................................ 22 1 2 0.50 1 1 0
.................................................................................................................GAAGTGCATCCAATTTGTTAGT......................................................................... 22 2 2 0.50 1 1 0
..............................................................................CATCAAAGTGGAGGCCCTCTCTAT.......................................................................................................... 24 2 3 0.33 1 1 0
...............................................................................ATCAAAGTGGAGGCCCTCTCTAT.......................................................................................................... 23 2 3 0.33 1 1 0

Anti-sense strand reads

TATAATTTTTCCTCGACCCTTCGGCCGGATCCGGACCCTCCACGACTGGAGCCTAGAACCTTCAACCTTGTGTCCCAGGTAGTTTCACCTCCGGGAGAGGCACCGAACCGCCCTTTCACGTAGGTAAAACAATCAGAGACACAGGGCGACCTGAGTGGACGGACGGTCTCCACCTAAGGAAATGATGTCCTCCGATCAAATTCAGTAC
**********************************************************.(((.((((((((.....(((((((((.((.((.(((((......)))))..)).)).))))))))).....)))))))).)))...*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:30 PM