ID:

rno-mir-291a

 Coordinate:

chr1:64538407-64538488 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.5 -42.9

Sense Strand Reads

AGGGGACCTGTGGAGTCCGGCGCCCAGTCGGGGCCTGGAGCTGTTGAATGCCGGTGTAGTAGCCATCAAAGTGGAGGCCCTCTCTTGGGCCCGAGCTAGAAAGTGCTTCCACTTTGTGTGCCACTGCATGGGGAAAGCATCTGCGTCTGGCCCTCCATCTGTCACGTGAGGGGGCTACCTGG
************************************************..((.(((((((.((((.((((((((((((.((.(((..(((....)))))).)).)))))))))))))).)).))))))).))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
...................................................................................................AAAGTGCTTCCACTTTGTGTGA............................................................. 22 1 1 11.00 11 11 0
...................................................................................................AAAGTGCTTCCACTTTGTGTGCT............................................................ 23 1 1 8.00 8 7 1
...............................................................CATCAAAGTGGAGGCCCTCTCT................................................................................................. 22 0 1 5.00 5 5 0
...................................................................................................AAAGTGCTTCCACTTTGTGTGC............................................................. 22 0 1 4.00 4 3 1
...............................................................CATCAAAGTGGAGGCCCTCTAAT................................................................................................ 23 2 1 2.00 2 2 0
...................................................................................................AAAGTGCTTCCACTTTGTGTGAA............................................................ 23 2 1 2.00 2 2 0
...................................................................................................AAAGTGCTTCCACTTTGTGTGAAT........................................................... 24 3 1 2.00 2 2 0
...............................................................CATCAAAGTGGAGGCCCTCTCAT................................................................................................ 23 1 1 1.00 1 1 0
...................................................................................................AAAGTGCTTCCACTTTGTGTGCATT.......................................................... 25 3 2 1.00 2 2 0
...................................................................................................AAAGTGCTTCCACTTTGTGTGCTT........................................................... 24 2 1 1.00 1 1 0
...................................................................................................AAAGTGCTTCCACTTTGTGTGCTA........................................................... 24 1 1 1.00 1 1 0
...............................................................CATCAAAGTGGAGGCCCTCTCGT................................................................................................ 23 1 1 1.00 1 1 0
...................................................................................................AAAGTGCTTCCACTTTGTGTG.............................................................. 21 0 1 1.00 1 1 0
...................................................................................................AAAGTGCTTCCACTTTGTGTGCCATT......................................................... 26 1 1 1.00 1 1 0
...................................................................................................AAAGTGCTTCCACTTTGTGTGCAT........................................................... 24 2 1 1.00 1 1 0
....................................................................................................AAGCGCTTCCACTTTGTGTGCA............................................................ 22 2 2 0.50 1 1 0
...............................................................CATCAAAGTGGAGGCCCTCTC.................................................................................................. 21 0 2 0.50 1 1 0
...............................................................CATCAAAGTGGAGGCCCTCTCAA................................................................................................ 23 2 2 0.50 1 1 0
...............................................................CATCAAAGTGGAGGCCCTCTCA................................................................................................. 22 1 2 0.50 1 1 0
...................................................................................................AAAGTGCTTCCACTTTGTGTGT............................................................. 22 1 2 0.50 1 1 0
................................................................ATCAAAGTGGAGGCCCTCTCTAT............................................................................................... 23 2 3 0.33 1 1 0
...............................................................CATCAAAGTGGAGGCCCTCTCTAT............................................................................................... 24 2 3 0.33 1 1 0
...............................................................CATCAAAGTGGAGGCCCTCTATAA............................................................................................... 24 3 4 0.25 1 1 0

Anti-sense strand reads

TCCCCTGGACACCTCAGGCCGCGGGTCAGCCCCGGACCTCGACAACTTACGGCCACATCATCGGTAGTTTCACCTCCGGGAGAGAACCCGGGCTCGATCTTTCACGAAGGTGAAACACACGGTGACGTACCCCTTTCGTAGACGCAGACCGGGAGGTAGACAGTGCACTCCCCCGATGGACC
**********************************************..((.(((((((.((((.((((((((((((.((.(((..(((....)))))).)).)))))))))))))).)).))))))).))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:29 PM