ID:

rno-mir-224

 Coordinate:

chrX:152223754-152223835 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-48.2 -48.0

Sense Strand Reads

CAGATAGGTGGAGCCTCATCATCAGAAGTGACAGAAGAGACAAGGTTCAGGGGCTTTCAAGTCACTAGTGGTTCCGTTTAGTAGATGGTTTTTGCATTGTTTCAAAATGGTGCCCTAGTGACTACAAAGCCCCAGAGCCAGCATCATCAGTGAAGCAATGTCAGTAGGTAAGCAACATCTCT
******************************************.(((((.((((((((..(((((((((.(((.((((((....((((.......))))......)))))).))))))))))))..)))))))).)))))..***************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
.........................................................CAAGTCACTAGTGGTTCCGTTTAG..................................................................................................... 24 0 1 194.00 194 187 7 0
.........................................................CAAGTCACTAGTGGTTCCGTTT....................................................................................................... 22 0 1 78.00 78 63 15 0
.........................................................CAAGTCACTAGTGGTTCCGTTTA...................................................................................................... 23 0 1 67.00 67 67 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAGT.................................................................................................... 25 0 1 56.00 56 56 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAA..................................................................................................... 24 1 1 32.00 32 31 1 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAT..................................................................................................... 24 1 1 19.00 19 19 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAGA.................................................................................................... 25 1 1 12.00 12 12 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTT...................................................................................................... 23 1 1 9.00 9 9 0 0
.........................................................CAAGTCACTAGTGGTTCCGTT........................................................................................................ 21 0 1 7.00 7 5 2 0
.........................................................TAAGTCACTAGTGGTTCCGTTT....................................................................................................... 22 1 1 7.00 7 1 0 6
.......................................................GTTAAGTCACTAGTGGTTCCGTTTA...................................................................................................... 25 2 1 7.00 7 0 0 7
..........................................................AAGTCACTAGTGGTTCCGTTTAGT.................................................................................................... 24 0 1 7.00 7 7 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAAA.................................................................................................... 25 2 1 6.00 6 6 0 0
.......................................................................................................AAAATGGTGCCCTAGTGACTACA........................................................ 23 0 1 4.00 4 4 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTTT..................................................................................................... 24 2 1 4.00 4 4 0 0
..........................................................AAGTCACTAGTGGTTCCGTTT....................................................................................................... 21 0 1 4.00 4 4 0 0
..........................................................AAGTCACTAGTGGTTCCGTTTAT..................................................................................................... 23 1 1 4.00 4 4 0 0
..........................................................AAGTCACTAGTGGTTCCGTTTT...................................................................................................... 22 1 1 3.00 3 3 0 0
........................................................ACAAGTCACTAGTGGTTCCGTTTA...................................................................................................... 24 1 1 3.00 3 3 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAGTTT.................................................................................................. 27 2 1 2.00 2 2 0 0
...............................................................ACTAGTGGTTCCGTTTAGT.................................................................................................... 19 0 1 2.00 2 0 2 0
...........................................................AGTCACTAGTGGTTCCGTTTAG..................................................................................................... 22 0 1 2.00 2 2 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTAAGA.................................................................................................... 25 2 1 2.00 2 2 0 0
........................................................................................................AAATGGTGCCCTAGTGACTAC......................................................... 21 0 1 2.00 2 2 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTTTT.................................................................................................... 25 2 1 2.00 2 2 0 0
..........................................................AAGTCACTAGTGGTTCCGTTTAG..................................................................................................... 23 0 1 2.00 2 2 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTAAG..................................................................................................... 24 1 1 2.00 2 2 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTTA..................................................................................................... 24 2 1 2.00 2 2 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAGTAT.................................................................................................. 27 1 1 2.00 2 2 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTTG..................................................................................................... 24 1 1 2.00 2 2 0 0
..........................................................AAGTCACTAGTGGTTCCGTTTAAA.................................................................................................... 24 2 1 2.00 2 2 0 0
.........................................................TAAGTCACTAGTGGTTCCGTTTAGT.................................................................................................... 25 1 1 1.00 1 0 0 1
.........................................................CAAGTCACTAGTGGTTCCGTTCAAT.................................................................................................... 25 2 1 1.00 1 1 0 0
.........................................................CAATTCACTAGTGGTTCCGTTTAA..................................................................................................... 24 2 1 1.00 1 1 0 0
.......................................................AACAAGTCACTAGTGGTTCCGTTTAT..................................................................................................... 26 3 1 1.00 1 1 0 0
.........................................................CAAGTCACTAGTGATTCCGTTTAG..................................................................................................... 24 1 1 1.00 1 1 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAGAAT.................................................................................................. 27 2 1 1.00 1 1 0 0
.........................................................TAAGTCACTAGTGGTTCCGTTTAT..................................................................................................... 24 2 1 1.00 1 0 0 1
..........................................................AAGTCACTAGTGGTTCCGTTTTGA.................................................................................................... 24 2 1 1.00 1 0 1 0
.......................................................................................................AAAATGGTGCCCTAGTGACTATTA....................................................... 24 2 1 1.00 1 1 0 0
.........................................................CAAGTCACTACTGGTTCCGTTTA...................................................................................................... 23 1 1 1.00 1 1 0 0
.......................................................AACAAGTCACTAGTGGTTCCGTTTAG..................................................................................................... 26 2 1 1.00 1 1 0 0
.........................................................CAAGTCACTAGTGGATCCGTTTAA..................................................................................................... 24 2 1 1.00 1 1 0 0
........................................................................................................AAATGGTGCCCTAGTGACTACAAT...................................................... 24 1 1 1.00 1 1 0 0
.........................................................CAGGTCACTAGTGGTTCCGTTTAG..................................................................................................... 24 1 1 1.00 1 1 0 0
.........................................................AAAGTCACTAGTGGTTCCGTTTAGT.................................................................................................... 25 1 1 1.00 1 1 0 0
.........................................................TAAGTCACTAGTGGCTCCGTTT....................................................................................................... 22 2 1 1.00 1 0 0 1
..........................................................AAGTCACTAGTGGTTCCGATT....................................................................................................... 21 1 1 1.00 1 1 0 0
.........................................................CAAGTCACTAGTGGTTCCGT......................................................................................................... 20 0 1 1.00 1 0 1 0
.........................................................CAAGTCACTAGTGGTTCCGTTCTA..................................................................................................... 24 3 1 1.00 1 1 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTGAG..................................................................................................... 24 1 1 1.00 1 1 0 0
.........................................................CAAGTCACTAGAGGTTCCGTTT....................................................................................................... 22 1 1 1.00 1 1 0 0
......................................................TTTCACTGCACTAGTGGTTCCGTTT....................................................................................................... 25 3 1 1.00 1 0 1 0
........................................................TCAAGTCACTAGTGGTTCCGTTG....................................................................................................... 23 1 1 1.00 1 1 0 0
........................................................................................................AAATGGTGCCCTAGTGACTACAA....................................................... 23 0 1 1.00 1 1 0 0
.........................................................CAAGTCACTAGTGGTCCCGTTTAT..................................................................................................... 24 2 1 1.00 1 1 0 0
........................................................ACAAGTCACTAGTGGTTCCGTTT....................................................................................................... 23 1 1 1.00 1 1 0 0
.........................................................CAAGTCACTAGTGGTTACGTTTAGT.................................................................................................... 25 1 1 1.00 1 1 0 0
.........................................................TAAGTCAATAGTGGTTCCGTTT....................................................................................................... 22 2 1 1.00 1 0 0 1
.........................................................CAAGTCACTAGTGGCTCCGTTTA...................................................................................................... 23 1 1 1.00 1 1 0 0
.........................................................AAAGTCACTAGTGGTTCCGTTTAG..................................................................................................... 24 1 1 1.00 1 1 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAC..................................................................................................... 24 1 1 1.00 1 1 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTAAA..................................................................................................... 24 2 1 1.00 1 1 0 0
...............................................................ACTAGTGGTTCCGTTTAG..................................................................................................... 18 0 1 1.00 1 0 1 0
........................................................................................................AAATGGTGCCCTAGTGACTACA........................................................ 22 0 1 1.00 1 1 0 0
.........................................................CAAGTCACCAGTGGTTCCGTTTAG..................................................................................................... 24 1 1 1.00 1 1 0 0
.........................................................CGAGTCACTAGTGGTTCCGTTTAG..................................................................................................... 24 1 1 1.00 1 0 1 0
.........................................................AAAGTCACTAGTGGTTCCGTTT....................................................................................................... 22 1 1 1.00 1 1 0 0
..........................................................AAGTCACTAGTGGTTCCGTTTAA..................................................................................................... 23 1 1 1.00 1 1 0 0
.........................................................CAAGTCAATAGTGGTTCCGTTTT...................................................................................................... 23 2 1 1.00 1 1 0 0
.........................................................CAAGTCACAAGTGGTTCCGTTAAT..................................................................................................... 24 3 1 1.00 1 1 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTGT..................................................................................................... 24 2 1 1.00 1 1 0 0
.........................................................CCAGTCACTAGTGGTTCCGTTT....................................................................................................... 22 1 1 1.00 1 0 1 0
.........................................................CAAGTCACTAGTGGCTCCGTTTAG..................................................................................................... 24 1 1 1.00 1 1 0 0
.........................................................CAAGTCACTAGTGGTTCCTTTTT...................................................................................................... 23 2 1 1.00 1 1 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAGTAG.................................................................................................. 27 0 1 1.00 1 1 0 0
.........................................................CAAGCCACTAGTGGTTCCGTTTAA..................................................................................................... 24 2 1 1.00 1 1 0 0
........................................................ACAAGTCACTAGTGGTTCCGTTTAGT.................................................................................................... 26 1 1 1.00 1 1 0 0
.........................................................CACGTCACTAGTGGTTCCGTTTA...................................................................................................... 23 1 1 1.00 1 1 0 0
........................................................ACAAGTCACTAGTGGTTCCGTATAGT.................................................................................................... 26 2 1 1.00 1 1 0 0
.........................................................CAAGTCACTAGTGGATCCGTTTAGT.................................................................................................... 25 1 1 1.00 1 1 0 0
.........................................................CAAGTCACTAGAGGTTCCGTTTA...................................................................................................... 23 1 1 1.00 1 1 0 0

Anti-sense strand reads

GTCTATCCACCTCGGAGTAGTAGTCTTCACTGTCTTCTCTGTTCCAAGTCCCCGAAAGTTCAGTGATCACCAAGGCAAATCATCTACCAAAAACGTAACAAAGTTTTACCACGGGATCACTGATGTTTCGGGGTCTCGGTCGTAGTAGTCACTTCGTTACAGTCATCCATTCGTTGTAGAGA
*****************************************.(((((.((((((((..(((((((((.(((.((((((....((((.......))))......)))))).))))))))))))..)))))))).)))))..****************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:52 PM