ID:

rno-mir-223

 Coordinate:

chrX:65367812-65367921 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.7 -40.5

Sense Strand Reads

TCAGGTGCATATCTTCCAGCATGTTCTTGCTGCTCATCCAAGGCTCCTGATCTGGCCTTCTGCAGTGTTACGCTCCGTGTATTTGACAAGCTGAGTTGGACACTCTGTGTGGTAGAGTGTCAGTTTGTCAAATACCCCAAGTGTGGCTCATGCTTATCAGCTCCAGGTCCAGGACTGAGCAGATAGCCTGCTGTCTTCATATGAGTGCTT
************************************************************.(((..((((((((....((((((((((((((......(((((((((.....)))))))))))))))))))))))....))))))))...)))..******************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAA...................................................................... 23 0 1 196.00 196 183 12 1
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAAT..................................................................... 24 1 1 95.00 95 95 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCA....................................................................... 22 0 1 72.00 72 71 1 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAT...................................................................... 23 1 1 69.00 69 67 2 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAAA..................................................................... 24 1 1 60.00 60 60 0 0
......................................................................................................................GTCAGTTTGTCAAATACCCCAA...................................................................... 22 0 1 42.00 42 34 8 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCATT..................................................................... 24 2 1 38.00 38 34 0 4
......................................................................................................................GTCAGTTTGTCAAATACCCCAAT..................................................................... 23 1 1 13.00 13 13 0 0
......................................................................................................................GTCAGTTTGTCAAATACCCCAAA..................................................................... 23 1 1 13.00 13 13 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAAAA.................................................................... 25 2 1 11.00 11 11 0 0
....................................................................................................................ATGTCAGTTTGTCAAATACCCCA....................................................................... 23 1 1 9.00 9 1 8 0
......................................................................................................................GTCAGTTTGTCAAATACCCCA....................................................................... 21 0 1 8.00 8 7 1 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCATTT.................................................................... 25 2 1 8.00 8 7 1 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCATA..................................................................... 24 2 1 8.00 8 8 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCC........................................................................ 21 0 1 8.00 8 8 0 0
....................................................................................................................ATGTCAGTTTGTCAAATACCCCAA...................................................................... 24 1 1 8.00 8 1 7 0
.....................................................................................................................TGTCAGTTTGTCAAATACCC......................................................................... 20 0 1 4.00 4 3 1 0
......................................................................................................................GTCAGTTTGTCAAATACCCCAT...................................................................... 22 1 1 4.00 4 4 0 0
.....................................................................................................................TGTCAGTTTGTCACATACCCCAA...................................................................... 23 1 1 4.00 4 4 0 0
......................................................................................................................GTCAGTTTGTCAAATACCCCAAAA.................................................................... 24 2 1 4.00 4 4 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCTATA.................................................................... 25 3 1 4.00 4 4 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAAGA.................................................................... 25 1 1 4.00 4 4 0 0
......................................................................................................................GTCAGTTTGTCAAATACCCCATT..................................................................... 23 2 1 3.00 3 3 0 0
......................................................................................................................GTCAGTTTGTCAAATACCCC........................................................................ 20 0 1 3.00 3 3 0 0
....................................................................................................................ATGTCAGTTTGTCAAATACCCCAT...................................................................... 24 2 1 3.00 3 3 0 0
.....................................................................................................................TGTCAGTTTGTCACATACCCCAAT..................................................................... 24 2 1 3.00 3 3 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCATAA.................................................................... 25 3 1 3.00 3 3 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCTT...................................................................... 23 2 2 3.00 6 6 0 0
.....................................................................................................................TGTCAGTTTGTCAACTACCCCAA...................................................................... 23 1 1 3.00 3 3 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCATTA.................................................................... 25 3 1 3.00 3 3 0 0
....................................................................................................................ATGTCAGTTTGTCAAATACCCC........................................................................ 22 1 1 3.00 3 3 0 0
.....................................................................................................................TGTCAGCTTGTCAAATACCCCAA...................................................................... 23 1 1 2.00 2 2 0 0
......................................................................................................................GTCAGTTTGTCAAATACCCCATAA.................................................................... 24 3 1 2.00 2 2 0 0
......................................................................................................................GTCAGTTTGTCAAATACCCCAATT.................................................................... 24 1 1 2.00 2 2 0 0
......................................................................................................................GTCAGTTTGTCAAATACCCCATGA.................................................................... 24 2 1 2.00 2 2 0 0
................................................................................................................TGGGGTGTCAGTTTGTCAAATACCCCAA...................................................................... 28 2 1 2.00 2 2 0 0
...........................................................................CGTGTATTTGACAAGCTGAGTTG................................................................................................................ 23 0 1 2.00 2 2 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCATTTT................................................................... 26 3 1 2.00 2 2 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAACA.................................................................... 25 2 1 2.00 2 2 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCTA...................................................................... 23 1 1 2.00 2 2 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCACA..................................................................... 24 2 1 2.00 2 2 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAC...................................................................... 23 1 1 2.00 2 2 0 0
...............................................................................TATTTGACAAGCTGAGTTGGACACTC......................................................................................................... 26 0 1 2.00 2 2 0 0
....................................................................................................................GTGTCAGTTTGTCAAATACCCCAA...................................................................... 24 0 1 2.00 2 2 0 0
......................................................................................................................GTCAGTTTGTCAAATACCCCAAGA.................................................................... 24 1 1 2.00 2 2 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAATA.................................................................... 25 2 1 2.00 2 2 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAG...................................................................... 23 1 1 2.00 2 2 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAATAA................................................................... 26 3 1 2.00 2 2 0 0
.....................................................................................................................AGTCAGTTTGTCAAATACCCCAA...................................................................... 23 1 1 2.00 2 0 2 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCATAT.................................................................... 25 2 1 2.00 2 2 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAATT.................................................................... 25 1 1 2.00 2 2 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAGA..................................................................... 24 2 1 2.00 2 2 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCT....................................................................... 22 1 1 2.00 2 2 0 0
............................................................................GTGTATTTGACAAGCTGAGTTGG............................................................................................................... 23 0 1 2.00 2 2 0 0
.....................................................................................................................TGTCAGTTTGTTAAATACCCCATT..................................................................... 24 3 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGGCAAATACCCCA....................................................................... 22 1 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCGAT..................................................................... 24 2 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTCTCAAATACCCCAAG..................................................................... 24 1 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCCA...................................................................... 23 1 1 1.00 1 1 0 0
.....................................................................................................................TGTCCGTTTGTCAAATACCCCAA...................................................................... 23 1 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAATTT................................................................... 26 2 1 1.00 1 0 1 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCATGAA................................................................... 26 3 1 1.00 1 1 0 0
.....................................................................................................................TATCAGTTTGTCAAATACCCCAAT..................................................................... 24 2 1 1.00 1 1 0 0
....................................................................................................................TTGTCAGTTTGTCAAATACCCCAA...................................................................... 24 1 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTATCAAATACCCCAAA..................................................................... 24 2 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATCCCCCA....................................................................... 22 1 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCATATACCCCAAT..................................................................... 24 2 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTCGTCAAATACCCCAAAA.................................................................... 25 3 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCTATT.................................................................... 25 2 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGCCAAATACCCCA....................................................................... 22 1 1 1.00 1 1 0 0
.....................................................................................................................AGTCAGTTTGTCAAATACCCCAT...................................................................... 23 2 1 1.00 1 1 0 0
...........................................................................CGTGTATTTGACACGCTGAGTTGGAA............................................................................................................. 26 2 1 1.00 1 1 0 0
......................................................................................................................GTCAGTTTGTCAAATACCCCAAGAGA.................................................................. 26 2 1 1.00 1 1 0 0
......................................................................................................................GTCAGTTTGTGAAATACCCCAA...................................................................... 22 1 1 1.00 1 1 0 0
........................................................................................................................CAGTTTGTCAAATACCCCA....................................................................... 19 0 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAGT..................................................................... 24 2 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCCAATACCCCAAT..................................................................... 24 2 1 1.00 1 0 1 0
.....................................................................................................................TGTCAGTTTGTCAAATACC.......................................................................... 19 0 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAAC..................................................................... 24 1 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGCTTGTCAAATACCC......................................................................... 20 1 1 1.00 1 1 0 0
......................................................................................................................GTCAGTTTGTCAAATACCCCAGA..................................................................... 23 2 2 1.00 2 2 0 0
......................................................................................................................GTCAGTTTGTCAAATACCCCAC...................................................................... 22 1 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCGTA..................................................................... 24 3 1 1.00 1 1 0 0
...........................................................................CGTGTATTTGACAAGCTGAGTTGG............................................................................................................... 24 0 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCCAT..................................................................... 24 2 1 1.00 1 1 0 0
.....................................................................................................................TGACAGTTTGTAAAATACCCCAAG..................................................................... 24 2 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCACATACCCCAG...................................................................... 23 2 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCATATACCCCA....................................................................... 22 1 1 1.00 1 1 0 0
......................................................................................................................GTCAGTTTGTCAACTACCCCAAGAAT.................................................................. 26 3 1 1.00 1 1 0 0
...................................................................................................................AATGTCAGTTTGTCAAATACCCCAAAT.................................................................... 27 2 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGATTGTCAAATACCCCAA...................................................................... 23 1 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAGTT.................................................................... 25 2 1 1.00 1 1 0 0
......................................................................................................................GTCCGTTTGTCAAATACCCCAATTAT.................................................................. 26 3 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCATC..................................................................... 24 2 1 1.00 1 1 0 0
....................................................................................................................ATGTCAGTTTGTCGAATACCCCAAA..................................................................... 25 3 1 1.00 1 1 0 0
......................................................................................................................GCCAGTTTGTCAAATACCCCA....................................................................... 21 1 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCTAT..................................................................... 24 2 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTAAAATACCCCA....................................................................... 22 1 1 1.00 1 1 0 0
.....................................................................................................................TGTCCGTTTGTCAAATACCCCAAT..................................................................... 24 2 1 1.00 1 1 0 0
.....................................................................................................................TGGCAGTTTGTCAAATACCCCAAT..................................................................... 24 2 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAGC..................................................................... 24 2 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAAAAGA.................................................................. 27 3 1 1.00 1 1 0 0
....................................................................................................................GTGTCAGTTTGTCAAATACCCCAT...................................................................... 24 1 1 1.00 1 1 0 0
.....................................................................................................................TGTTAGTTTGTCAAATACCCCAT...................................................................... 23 2 1 1.00 1 1 0 0
......................................................................................................................GTCAGTTTGTCAAATACCCCAATTAT.................................................................. 26 2 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATCCCCCAT...................................................................... 23 2 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCATATACCCCAA...................................................................... 23 1 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAAAT.................................................................... 25 1 1 1.00 1 1 0 0
.....................................................................................................................TATCAGTTTGTCAAATACCC......................................................................... 20 1 1 1.00 1 1 0 0
..........................................................................................................................GTTTGTCAAATACCCCAA...................................................................... 18 0 1 1.00 1 0 1 0
................................................................................ATTTGACAAGCTGAGTTGGACACTT......................................................................................................... 25 1 1 1.00 1 0 1 0
.......................................................................................................................TCAGTTTGTCAAATACCCCAA...................................................................... 21 0 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCGA...................................................................... 23 1 1 1.00 1 1 0 0
................................................................................ATTTGACAAGCTGAGTTGGACACT.......................................................................................................... 24 0 1 1.00 1 0 1 0
...........................................................................CGTGTATTTGACAAGCTGAGTTGGT.............................................................................................................. 25 1 1 1.00 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAACTACCCCA....................................................................... 22 1 1 1.00 1 1 0 0
....................................................................................................................ATGTCAGTTTGTCAAATACCCCAGA..................................................................... 25 3 3 0.67 2 0 2 0
.....................................................................................................................TGTCAGTTAGTCAAATACCCCATT..................................................................... 24 3 2 0.50 1 1 0 0
....................................................................................................................ATGTCAGTTTGTCAACTACCCCAA...................................................................... 24 2 2 0.50 1 0 1 0
......................................................................................................................GTCAGTTTGTCAAATACCCCTAT..................................................................... 23 2 2 0.50 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAACTACCCCAT...................................................................... 23 2 2 0.50 1 1 0 0
......................................................................................................................GTCAGTTTGTAAAATACCCCAAT..................................................................... 23 2 2 0.50 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCTCAAA..................................................................... 24 2 2 0.50 1 1 0 0
......................................................................................................................GTGCGTTTGTCAACTACCCCAA...................................................................... 22 3 2 0.50 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCTTA..................................................................... 24 3 2 0.50 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCCAGAA.................................................................... 25 3 3 0.33 1 1 0 0
.....................................................................................................................TGTCAGTTTGACAAATACCCCATA..................................................................... 24 3 3 0.33 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCAAT...................................................................... 23 2 3 0.33 1 1 0 0
.....................................................................................................................TGTCAGTTTGTCAAATACCCTT....................................................................... 22 2 3 0.33 1 0 1 0
.....................................................................................................................TGTCAGTTTGTCATATACCCCATT..................................................................... 24 3 3 0.33 1 1 0 0
.....................................................................................................................TGTAAGTTTGTCACATACCCCGA...................................................................... 23 3 3 0.33 1 1 0 0
......................................................................................................................GTCAGTTTGTCAAATACCCCATTA.................................................................... 24 3 4 0.25 1 1 0 0
.....................................................................................................................TGTCAGTTTGTAAACTACCCC........................................................................ 21 2 4 0.25 1 1 0 0
............................................................................................................................TTGTCAAATACCCCA....................................................................... 15 0 6 0.17 1 0 1 0
.....................................................................................................................TGTCAGTTTGTAAAATACCCCATT..................................................................... 24 3 7 0.14 1 1 0 0

Anti-sense strand reads

AGTCCACGTATAGAAGGTCGTACAAGAACGACGAGTAGGTTCCGAGGACTAGACCGGAAGACGTCACAATGCGAGGCACATAAACTGTTCGACTCAACCTGTGAGACACACCATCTCACAGTCAAACAGTTTATGGGGTTCACACCGAGTACGAATAGTCGAGGTCCAGGTCCTGACTCGTCTATCGGACGACAGAAGTATACTCACGAA
*******************************************************.(((..((((((((....((((((((((((((......(((((((((.....)))))))))))))))))))))))....))))))))...)))..************************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:51 PM