ID:

rno-mir-219b

 Coordinate:

chr3:8407427-8407526 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.0 -32.0 -32.0

Sense Strand Reads

TCTCCCAGAGTGGACCTCCTCTCTGCGGCCCCCGGCCCCCGTCTCTGTTGAGACCGGAGCTCAACCACAGATGTCCAGCCACAATTCTCGGTTGGCCGCAGACTCGTACAAGAATTGCGTTTGGACAATCAGTGGTGAAGCCCCTGAGTTCAGGGCTCCGGTCCCCCTCGGGGTTCTGCCTGGCTCCTTAAAAGCGCACA
*****************************************************..((.(((..(((((.(((((((((...((((((((((((.......))).))....)))))))...)))))).))).)))))..))))).....**************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP
..............................................................................................................AGAATTGCGTTTGGACAATCAGT................................................................... 23 0 1 4.00 4 4 0
....................................................................AGATGTCCAGCCACAATTCTCG.............................................................................................................. 22 0 1 3.00 3 3 0
....................................................................AGATGTCCAGCCACAATTCTCGA............................................................................................................. 23 1 1 2.00 2 2 0
.........................................TCTGTGTTGAGACCG................................................................................................................................................ 15 1 20 0.20 4 0 4

Anti-sense strand reads

AGAGGGTCTCACCTGGAGGAGAGACGCCGGGGGCCGGGGGCAGAGACAACTCTGGCCTCGAGTTGGTGTCTACAGGTCGGTGTTAAGAGCCAACCGGCGTCTGAGCATGTTCTTAACGCAAACCTGTTAGTCACCACTTCGGGGACTCAAGTCCCGAGGCCAGGGGGAGCCCCAAGACGGACCGAGGAATTTTCGCGTGT
****************************************************..((.(((..(((((.(((((((((...((((((((((((.......))).))....)))))))...)))))).))).)))))..))))).....***************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
...........................................................................................................TGCTCTTAACGCAAACCTGTTAGT..................................................................... 24 1 2 12.00 24 24 0
............................................................................................................GTTCTTAACGCAAACCTGTTAGT..................................................................... 23 0 1 11.00 11 11 0
..............................................................................................................TCTTAACGCAAACCTGTTAGT..................................................................... 21 0 2 10.00 20 19 1
...........................................................................................................TGTTCTTAACGCAAACCTGTTAGT..................................................................... 24 0 1 8.00 8 8 0
...........................................................................................................TGCTCTTAACGCAAACCTGTTAGTA.................................................................... 25 2 2 5.50 11 1 10
............................................................................................................GATCTTAACGCAAACCTGTTAGT..................................................................... 23 1 2 2.00 4 4 0
...............................................................................................................CTTAACGCAAACCTGTTAGT..................................................................... 20 0 2 1.00 2 2 0
................................................................TATGTCTACAGGTCGGTGTTAAGA................................................................................................................ 24 2 1 1.00 1 0 1
..................................................................TGTCTACAGGTCGGTGTTAAGA................................................................................................................ 22 0 1 1.00 1 1 0
...........................................................................................................TGATCTTAACGCAAACCTGTTAGT..................................................................... 24 1 1 1.00 1 1 0
............................................................................................................GTACTTCACGCAAACCTGTTAGT..................................................................... 23 2 1 1.00 1 1 0
...........................................................................................................TGTTCTTAACCCAAACCTGTTAGT..................................................................... 24 1 1 1.00 1 1 0
...........................................................................................................AGTTCTTAACGCAAACCTGTTAGT..................................................................... 24 1 2 0.50 1 1 0
..........................................................................................................TTGCTCTTAACGCAAACCTGTTAGT..................................................................... 25 2 2 0.50 1 1 0
...........................................................................................................TGCTCTTAACGCAAACCTGTTAGG..................................................................... 24 2 2 0.50 1 1 0
...........................................................................................................TGCTCTTAACGCAAACCTGTCAGT..................................................................... 24 2 2 0.50 1 1 0
................................................................................................................TTAACGCAAACCTGTTAGT..................................................................... 19 0 2 0.50 1 1 0
..............................................................................................................TCTTAACGCAAACCTGTTAG...................................................................... 20 0 2 0.50 1 1 0
............................................................................................................GATCTTAACCCCAACCTGTTAGT..................................................................... 23 3 4 0.25 1 1 0

Generated: 04/30/2015 at 05:43 PM