ID:

rno-mir-219a-2

 Coordinate:

chr3:8407430-8407525 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-46.0 -45.0 -45.0

Sense Strand Reads

GTGCGCTTTTAAGGAGCCAGGCAGAACCCCGAGGGGGACCGGAGCCCTGAACTCAGGGGCTTCACCACTGATTGTCCAAACGCAATTCTTGTACGAGTCTGCGGCCAACCGAGAATTGTGGCTGGACATCTGTGGTTGAGCTCCGGTCTCAACAGAGACGGGGGCCGGGGGCCGCAGAGAGGAGGTCCACTCTGGG
*****************************************************..(((((((.(((((.(((.(((((..(((((((((((.....(((...)))....)))))))))))..)))))))).))))).)))))))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
....................................................................TGATTGTCCAAACGCAATTCTCGT........................................................................................................ 24 1 2 12.00 24 24 0
....................................................................TGATTGTCCAAACGCAATTCTTG......................................................................................................... 23 0 1 11.00 11 11 0
....................................................................TGATTGTCCAAACGCAATTCT........................................................................................................... 21 0 2 10.00 20 19 1
....................................................................TGATTGTCCAAACGCAATTCTTGT........................................................................................................ 24 0 1 8.00 8 8 0
...................................................................ATGATTGTCCAAACGCAATTCTCGT........................................................................................................ 25 2 2 5.50 11 1 10
....................................................................TGATTGTCCAAACGCAATTCTAG......................................................................................................... 23 1 2 2.00 4 4 0
....................................................................TGATTGTCCAAACGCAATTC............................................................................................................ 20 0 2 1.00 2 2 0
...............................................................................................................AGAATTGTGGCTGGACATCTGTAT............................................................. 24 2 1 1.00 1 0 1
...............................................................................................................AGAATTGTGGCTGGACATCTGT............................................................... 22 0 1 1.00 1 1 0
....................................................................TGATTGTCCAAACGCAATTCTAGT........................................................................................................ 24 1 1 1.00 1 1 0
....................................................................TGATTGTCCAAACGCACTTCATG......................................................................................................... 23 2 1 1.00 1 1 0
....................................................................TGATTGTCCAAACCCAATTCTTGT........................................................................................................ 24 1 1 1.00 1 1 0
....................................................................TGATTGTCCAAACGCAATTCTTGA........................................................................................................ 24 1 2 0.50 1 1 0
....................................................................TGATTGTCCAAACGCAATTCTCGTT....................................................................................................... 25 2 2 0.50 1 1 0
....................................................................GGATTGTCCAAACGCAATTCTCGT........................................................................................................ 24 2 2 0.50 1 1 0
....................................................................TGACTGTCCAAACGCAATTCTCGT........................................................................................................ 24 2 2 0.50 1 1 0
....................................................................TGATTGTCCAAACGCAATT............................................................................................................. 19 0 2 0.50 1 1 0
.....................................................................GATTGTCCAAACGCAATTCT........................................................................................................... 20 0 2 0.50 1 1 0
....................................................................TGATTGTCCAACCCCAATTCTAG......................................................................................................... 23 3 4 0.25 1 1 0

Anti-sense strand reads

CACGCGAAAATTCCTCGGTCCGTCTTGGGGCTCCCCCTGGCCTCGGGACTTGAGTCCCCGAAGTGGTGACTAACAGGTTTGCGTTAAGAACATGCTCAGACGCCGGTTGGCTCTTAACACCGACCTGTAGACACCAACTCGAGGCCAGAGTTGTCTCTGCCCCCGGCCCCCGGCGTCTCTCCTCCAGGTGAGACCC
************************************************..(((((((.(((((.(((.(((((..(((((((((((.....(((...)))....)))))))))))..)))))))).))))).)))))))....***************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP
..................................................................TGACTAACAGGTTTGCGTTAAGA........................................................................................................... 23 0 1 4.00 4 4 0
.............................................................................................................GCTCTTAACACCGACCTGTAGA................................................................. 22 0 1 3.00 3 3 0
............................................................................................................AGCTCTTAACACCGACCTGTAGA................................................................. 23 1 1 2.00 2 2 0
...............................................................................................................................................GCCAGAGTTGTGTCT...................................... 15 1 20 0.20 4 0 4

Generated: 04/30/2015 at 05:43 PM