ID:

rno-mir-219a-1

 Coordinate:

chr20:3816158-3816267 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-56.0

Sense Strand Reads

CGCTTCCGCGTGGCGTCTCCAGCCCCGGTGCCTCCTGTGCGCTTCTCTCCCTGTCCCGGGCCGCGGCTCCTGATTGTCCAAACGCAATTCTCGAGTCTCTGGCTCCGGCCGAGAGTTGCGTCTGGACGTCCCGAGCCGCCGCCCCCAAACCTCGAGGGGGAGAGGCCGGGCGAAGCGCGGGACAGTCCCCGGACACTCTCGGGACCCCGC
*******************************************************..((((.(((((((..(((.(((((.((((((((((((.(((.........))))))))))))))).))))))))..))))))).)))).....************************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
......................................................................TGATTGTCCAAACGCAATTCTCG..................................................................................................................... 23 0 1 364.00 364 360 3 1
.......................................................................GATTGTCCAAACGCAATTCTCG..................................................................................................................... 22 0 1 22.00 22 22 0 0
......................................................................TGATTGTCCAAACGCAATTCTC...................................................................................................................... 22 0 1 19.00 19 18 1 0
......................................................................TGATTGTCCAAACGCAATTCTCGA.................................................................................................................... 24 0 1 15.00 15 14 1 0
......................................................................TGATTGTCCAAACGCAATTCTCGT.................................................................................................................... 24 1 2 12.00 24 24 0 0
......................................................................TGATTGTCCAAACGCAATTCT....................................................................................................................... 21 0 2 10.00 20 19 1 0
...............................................................................................................AGAGTTGCGTCTGGACGTCCCGA............................................................................ 23 0 1 6.00 6 6 0 0
.....................................................................ATGATTGTCCAAACGCAATTCTCGT.................................................................................................................... 25 2 2 5.50 11 1 10 0
......................................................................TGATTGTCCAAACGCAATTCTCT..................................................................................................................... 23 1 1 5.00 5 5 0 0
.....................................................................ATGATTGTCCAAACGCAATTCTCG..................................................................................................................... 24 1 1 4.00 4 4 0 0
...............................................................................................................AGAGTTGCGTCTGGACGTCCCTA............................................................................ 23 1 1 3.00 3 3 0 0
...............................................................................................................AGAGTTGCGTCTGGACGTCCCGTTT.......................................................................... 25 3 1 3.00 3 3 0 0
........................................................................ATTGTCCAAACGCAATTCTC...................................................................................................................... 20 0 1 3.00 3 3 0 0
......................................................................TGATTGTCCAACCGCAATTCTCG..................................................................................................................... 23 1 1 3.00 3 3 0 0
......................................................................TGATTGTCCAAACGCAATTCTCA..................................................................................................................... 23 1 1 2.00 2 2 0 0
......................................................................TGATTGTCCAGACGCAATTCTCG..................................................................................................................... 23 1 1 2.00 2 2 0 0
......................................................................TGATTGTCCAACCGAAATTCTCG..................................................................................................................... 23 2 1 2.00 2 2 0 0
...............................................................................................................AGAGTTGCGTCTGGACGTCCCGT............................................................................ 23 1 1 2.00 2 2 0 0
.......................................................................GATTGTCCAAACGCAATTCTCGAAA.................................................................................................................. 25 2 1 2.00 2 0 2 0
......................................................................TGATTGTCCAAACGCAATTCTAG..................................................................................................................... 23 1 2 2.00 4 4 0 0
......................................................................TGATTGTCCAAACGCAATTCTCGAA................................................................................................................... 25 1 1 2.00 2 2 0 0
......................................................................TGGTTGTCCAAACGCAATTCTCG..................................................................................................................... 23 1 1 2.00 2 2 0 0
......................................................................TGATTGTCCAAACGCAATTCTCGAGTC................................................................................................................. 27 0 1 2.00 2 2 0 0
.......................................................................GATTGTCCAAACGCAATTCTC...................................................................................................................... 21 0 1 2.00 2 2 0 0
......................................................................TGATTGTCCATACGCAATTCTCG..................................................................................................................... 23 1 1 1.00 1 1 0 0
.......................................................................TATTGTCCAAACGCAATTCTCG..................................................................................................................... 22 1 1 1.00 1 1 0 0
...............................................................................................................AGAGTTGCGTCTGGACGTCCCGAT........................................................................... 24 1 1 1.00 1 1 0 0
...............................................................................................................AGAGTTGCGTCTGGACGTCCCGAAA.......................................................................... 25 2 1 1.00 1 1 0 0
......................................................................TGATTGTCCACACGCAATTCTC...................................................................................................................... 22 1 1 1.00 1 1 0 0
......................................................................TGATTGCCCAAACGCAATTCTCG..................................................................................................................... 23 1 1 1.00 1 1 0 0
.....................................................................ATGATTGTCCAAACGCAATTCTC...................................................................................................................... 23 1 1 1.00 1 1 0 0
......................................................................AGATTGTCCAAACGCAATTCTCG..................................................................................................................... 23 1 1 1.00 1 1 0 0
......................................................................TGATTTTCCAAACGCAATTCTC...................................................................................................................... 22 1 1 1.00 1 1 0 0
...............................................................................................................AGAGTTGCGTCTGGACGTCCCGATT.......................................................................... 25 2 1 1.00 1 1 0 0
......................................................................TGATTGTCCAAACGCAACTCTCG..................................................................................................................... 23 1 1 1.00 1 1 0 0
......................................................................TGACTGTCAAAACGCAATTCTCG..................................................................................................................... 23 2 1 1.00 1 0 0 1
.......................................................................GATTGTCCCAACGCCATTCTCG..................................................................................................................... 22 2 1 1.00 1 1 0 0
......................................................................TGATTGTCCAAACGCAATTC........................................................................................................................ 20 0 2 1.00 2 2 0 0
.......................................................................GATTGACCAAACGCAATTCTCG..................................................................................................................... 22 1 1 1.00 1 1 0 0
...............................................................................................................AGAGTTGCGTCTGGACGTCCCGAA........................................................................... 24 1 1 1.00 1 1 0 0
......................................................................CGATTGTCCAAACGCAATTCTC...................................................................................................................... 22 1 1 1.00 1 1 0 0
.......................................................................GATTGTCCAAACGAAATTCTCA..................................................................................................................... 22 2 1 1.00 1 1 0 0
......................................................................TGCTTGTCCAAACGCAATTCTCG..................................................................................................................... 23 1 1 1.00 1 1 0 0
......................................................................TGATTGTCCAAACGTAATTCTCG..................................................................................................................... 23 1 1 1.00 1 0 0 1
...............................................................................................................AGAGTTGCGTCTGGACGTCCCGAAT.......................................................................... 25 2 1 1.00 1 1 0 0
......................................................................TGATTGTCCAAACGCAAATCTCG..................................................................................................................... 23 1 1 1.00 1 1 0 0
.............................................................................................................CGAGAGTTGCGTCTGGACGCCA............................................................................... 22 2 1 1.00 1 0 1 0
......................................................................TGACTGTCCAAACGCAATTCTCG..................................................................................................................... 23 1 1 1.00 1 1 0 0
.......................................................................GATTGCCCAAACGCAATTCTCG..................................................................................................................... 22 1 1 1.00 1 1 0 0
.......................................................................GATTGTCCAAACACAATTTTCG..................................................................................................................... 22 2 1 1.00 1 1 0 0
......................................................................TGATTGTCCAAACGCAATTCTCCG.................................................................................................................... 24 2 1 1.00 1 0 0 1
......................................................................TGATTGTCCAAACGCACTTCTCG..................................................................................................................... 23 1 1 1.00 1 1 0 0
......................................................................GGATTGTCCAAACGCAATTCTCT..................................................................................................................... 23 2 1 1.00 1 1 0 0
.......................................................................GATTGTCCAAACGCAATTCT....................................................................................................................... 20 0 2 0.50 1 1 0 0
......................................................................TGACTGTCCAAACGCAATTCTCGT.................................................................................................................... 24 2 2 0.50 1 1 0 0
......................................................................GGATTGTCCAAACGCAATTCTCGT.................................................................................................................... 24 2 2 0.50 1 1 0 0
......................................................................CGATTGTCCAACCGCAATTCTCC..................................................................................................................... 23 3 2 0.50 1 1 0 0
......................................................................TGATTGTCCAAACGCAATTCTTGA.................................................................................................................... 24 1 2 0.50 1 1 0 0
......................................................................TGATTGTCCAAACGCAATTCTCGTT................................................................................................................... 25 2 2 0.50 1 1 0 0
......................................................................TGATTGTCCAAACGCAATT......................................................................................................................... 19 0 2 0.50 1 1 0 0
......................................................................TGATTGTCCAACCCCAATTCTAG..................................................................................................................... 23 3 4 0.25 1 1 0 0

Anti-sense strand reads

GCGAAGGCGCACCGCAGAGGTCGGGGCCACGGAGGACACGCGAAGAGAGGGACAGGGCCCGGCGCCGAGGACTAACAGGTTTGCGTTAAGAGCTCAGAGACCGAGGCCGGCTCTCAACGCAGACCTGCAGGGCTCGGCGGCGGGGGTTTGGAGCTCCCCCTCTCCGGCCCGCTTCGCGCCCTGTCAGGGGCCTGTGAGAGCCCTGGGGCG
*************************************************************..((((.(((((((..(((.(((((.((((((((((((.(((.........))))))))))))))).))))))))..))))))).)))).....******************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
..........................................................................................................TCGGCTCTCAACGCAGACCTGCA................................................................................. 23 1 1 3.00 3 3
............................................................................................................AACTCTCAACGCAGACCTGCAGG............................................................................... 23 2 1 2.00 2 2
............................................................................................................GGCTCTCAACGCAGACCTGCAGG............................................................................... 23 0 1 1.00 1 1

Generated: 04/30/2015 at 05:42 PM