ID:

rno-mir-211

Coordinate:

chr1:125042119-125042224 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

TAAATCGGTTGGGTTGGTTTTACACTTTCGTAATTTTGGACTTGTCAGTTCAGCTTGGACCTGTGACCTCTGGGCTTCCCTTTGTCATCCTTTGCCTAGGCCTCTGAGTGGGGCAAGGACAGCAAAGGGGGGCTCAGTGGTCACCTCTACTGCAGAGAGTTTTGGGAGCCTAGCCTGAGCCAAGAGCAAGTTCTACTCTGCTTCTG
***********************************..((.(((.(((((((.((.((((...((((((.((((((((((((((((..(((.((((((..((......)).)))))))))..)))))))))))))))).)))))).))))..)).)))....))))))))).***********************************
Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
GSM1528817
Adult_testes
...........................................................................TTCCCTTTGTCATCCTATGCCTAT........................................................................................................... 24 2 2 12.50 25 25 0
...........................................................................TTCCCTTTGTCATCCTATGCCTA............................................................................................................ 23 1 2 5.50 11 11 0
................................................................................................................GCAAGGACAGCAAAGGGGGGTTT....................................................................... 23 2 1 3.00 3 3 0
...........................................................................TTCCCTTTGTCATCCTATGCCTAGA.......................................................................................................... 25 2 1 2.00 2 2 0
...........................................................................TTCCCTTTGTCATCCTCTGCCT............................................................................................................. 22 1 2 1.50 3 3 0
.........................................................................GTTTCCCTTTGTCATCCTATGCCT............................................................................................................. 24 2 2 1.50 3 3 0
...........................................................................TTCCCTTTGTCATCCTATGCCTATT.......................................................................................................... 25 3 2 1.50 3 3 0
................................................................................................................GCAAGGACAGCAAAGGGGGGCTAT...................................................................... 24 2 1 1.00 1 1 0
............................................................................TCCCTTTGTCATCCTATGCCTA............................................................................................................ 22 1 2 1.00 2 2 0
...........................................................................TTCCCTTTGTCATCCTATGCCTAC........................................................................................................... 24 2 2 1.00 2 2 0
..........................................................................ATTCCCTTTGTCATCCTTTGCCT............................................................................................................. 23 1 1 1.00 1 0 1
...........................................................................TTCCCTTTGTCATCCTATGCCTATA.......................................................................................................... 25 3 2 0.50 1 1 0
...........................................................................TTCCCTTTGTCATCCTTTGCCTG............................................................................................................ 23 1 2 0.50 1 1 0
...........................................................................TTCCCTTTGTCATCCTATGCCAA............................................................................................................ 23 2 3 0.33 1 1 0

Anti-sense strand reads

ATTTAGCCAACCCAACCAAAATGTGAAAGCATTAAAACCTGAACAGTCAAGTCGAACCTGGACACTGGAGACCCGAAGGGAAACAGTAGGAAACGGATCCGGAGACTCACCCCGTTCCTGTCGTTTCCCCCCGAGTCACCAGTGGAGATGACGTCTCTCAAAACCCTCGGATCGGACTCGGTTCTCGTTCAAGATGAGACGAAGAC
***********************************..((.(((.(((((((.((.((((...((((((.((((((((((((((((..(((.((((((..((......)).)))))))))..)))))))))))))))).)))))).))))..)).)))....))))))))).***********************************
Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:31 PM