ID:

rno-mir-208a

 Coordinate:

chr15:33613451-33613533 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.3 -40.3 -40.2

Sense Strand Reads

ATAAAACCCTGAGTCTTGCAACCTGTAACGCCTGGCTGACCCTTGCTTACTTCCTTTGACGGGTGAGCTTTTGGCCCGGGTTATACCTGACTCTCACGTATAAGACGAGCAAAAAGCTTGTTGGTCAGAGGAGCTATCGTCTCTCAGCCTGGGCTTACGGGAAGGGGCGGGGCCGCGCTGCCA
***********************************((((....((..((.((((((((((.(((((((((((.((.((..((((((.(((...))).))))))..)).)).))))))))))).)))))))))).)).))....)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
...................................................................................................ATAAGACGAGCAAAAAGCTTGT.............................................................. 22 0 1 56.00 56 49 7
...................................................................................................ATAAGACGAGCAAAAAGCTTGTA............................................................. 23 1 1 8.00 8 8 0
...................................................................................................ATAAGACGAGCAAAAAGCTTGTT............................................................. 23 0 1 7.00 7 7 0
....................................................................................................TAAGACGAGCAAAAAGCTTGTTT............................................................ 23 1 1 6.00 6 6 0
...................................................................................................ATAAGACGAGCAAAAAGCTTG............................................................... 21 0 1 5.00 5 2 3
...................................................................................................ATAAGACGAGCAAAAAGCTTGTAA............................................................ 24 2 1 4.00 4 4 0
...................................................................................................ATAAGACGAGCAAAAAGCTT................................................................ 20 0 1 3.00 3 3 0
.....................................................................................................AAGACGAGCAAAAAGCTTGT.............................................................. 20 0 1 3.00 3 3 0
....................................................................................................TAAGACGAGCAAAAAGCTTGTAA............................................................ 23 2 1 3.00 3 3 0
................................................................GAGCTTTTGGCCCGGGTTATACT................................................................................................ 23 1 1 3.00 3 3 0
....................................................................................................TAAGACGAGCAAAAAGCTTGT.............................................................. 21 0 1 3.00 3 3 0
...................................................................................................ATAAGACGAGCAAAAAGCTTGTTA............................................................ 24 1 1 2.00 2 2 0
...................................................................................................ATAAGACGAGCAAAAAGCTTGTAT............................................................ 24 2 1 2.00 2 2 0
...................................................................................................ATAAGACGAGCAAAAAGCTTGA.............................................................. 22 1 1 2.00 2 1 1
....................................................................................................TAAGACGAGCAAAAAGCTTGTA............................................................. 22 1 1 2.00 2 2 0
...................................................................................................ATAAGACGAGCAAAAAGCTTGTAG............................................................ 24 1 1 2.00 2 2 0
....................................................................................................TAAGACGAGCAAAAAGCTTGTTA............................................................ 23 1 1 1.00 1 1 0
...................................................................................................ATACGACGAGCAAAAAGCTTGT.............................................................. 22 1 1 1.00 1 1 0
........................................................................................................ACGAGCAAAAAGCTTGTTT............................................................ 19 1 1 1.00 1 1 0
....................................................................................................TAAGACGAGCAAAAAGCTTGTCT............................................................ 23 2 1 1.00 1 1 0
....................................................................................................TAAGACGAGCAAAAAGCTTTTTT............................................................ 23 2 1 1.00 1 1 0
....................................................................................................TAAGACGAGCAAAAAGCTT................................................................ 19 0 1 1.00 1 1 0
...................................................................................................ATCAGACGAGCAAAAAGCTTGT.............................................................. 22 1 1 1.00 1 0 1
...................................................................................................ATAAGACGAGCAAAAAGCCT................................................................ 20 1 1 1.00 1 1 0
....................................................................................................TAAGACGAGCAAAAAGCTTGTT............................................................. 22 0 1 1.00 1 1 0
...................................................................................................ATAAGACGAGCAAACAGCTTGT.............................................................. 22 1 1 1.00 1 1 0
...................................................................................................ATAAGACGAGCCAAAAGCTTGT.............................................................. 22 1 1 1.00 1 1 0
...................................................................................................ATAAGACGAGCAAAAAGCTTGTTT............................................................ 24 1 1 1.00 1 1 0
....................................................................................................TAAGACGAGCAAAAAGCTTG............................................................... 20 0 1 1.00 1 1 0
....................................................................................................TAAGACGAGCAAAAAGCTTGTAT............................................................ 23 2 2 0.50 1 1 0
...................................................................................................ATAAGACGAGCAAAAAGCTTGAA............................................................. 23 2 2 0.50 1 1 0

Anti-sense strand reads

TATTTTGGGACTCAGAACGTTGGACATTGCGGACCGACTGGGAACGAATGAAGGAAACTGCCCACTCGAAAACCGGGCCCAATATGGACTGAGAGTGCATATTCTGCTCGTTTTTCGAACAACCAGTCTCCTCGATAGCAGAGAGTCGGACCCGAATGCCCTTCCCCGCCCCGGCGCGACGGT
***********************************((((....((..((.((((((((((.(((((((((((.((.((..((((((.(((...))).))))))..)).)).))))))))))).)))))))))).)).))....)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:35 PM