ID:rno-mir-200a |
Coordinate:chr5:173489366-173489454 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -42.0 | -41.7 | -41.3 |
 |
 |
 |
|
TGAGGGTGGAAACCACATATCCTGCTCTGTGTCTTCCTACCAAAGCATACCTGGGCCTCTGTGGGCATCTTACCGGACAGTGCTGGATTTCTTGGCTTGACTCTAACACTGTCTGGTAACGATGTTCAAAGGTGACCCAACACTCGCCGAAGACAGGCTGATGATACACACTTGTCTTAGCTCCTGGAC
***********************************.........((.....(((((((...(((((((((((((((((((((.((((..((.......)).)))).))))))))))))).)))))))).)))...))))......)).......*********************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | GSM1528819 10dpp_testes |
GSM1528818 Adult_testes_Mili_IP |
GSM1528817 Adult_testes |
|---|---|---|---|---|---|---|---|---|
| .......................................................................................................TAACACTGTCTGGTAACGATGTT............................................................... | 23 | 0 | 1 | 150.00 | 150 | 134 | 16 | 0 |
| .......................................................................................................TAACACTGTCTGGTAACGATGTTT.............................................................. | 24 | 1 | 1 | 50.00 | 50 | 49 | 1 | 0 |
| .......................................................................................................TAACACTGTCTGGTAACGATGTTA.............................................................. | 24 | 1 | 1 | 33.00 | 33 | 28 | 5 | 0 |
| .......................................................................................................TAACACTGTCTGGTAACGATGT................................................................ | 22 | 0 | 1 | 9.00 | 9 | 9 | 0 | 0 |
| .......................................................................................................TAACACTGTCTGGTAACGATGTTAT............................................................. | 25 | 2 | 1 | 9.00 | 9 | 8 | 1 | 0 |
| ......................................................................................................ATAACACTGTCTGGTAACGATGTT............................................................... | 24 | 1 | 1 | 7.00 | 7 | 7 | 0 | 0 |
| ........................................................................................................AACACTGTCTGGTAACGATGTTT.............................................................. | 23 | 1 | 1 | 4.00 | 4 | 4 | 0 | 0 |
| .......................................................................................................TAACACTGTCTGGTAACGATGTTAA............................................................. | 25 | 1 | 1 | 4.00 | 4 | 4 | 0 | 0 |
| ........................................................................................................AACACTGTCTGGTAACGATGTTA.............................................................. | 23 | 1 | 1 | 4.00 | 4 | 4 | 0 | 0 |
| ........................................................................................................AACACTGTCTGGTAACGATGTT............................................................... | 22 | 0 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| .......................................................................................................TAACACTGTCTGGTAACGATGTAA.............................................................. | 24 | 2 | 1 | 3.00 | 3 | 3 | 0 | 0 |
| .......................................................................................................TAACACTGTCTGGTAACGATGTTTT............................................................. | 25 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .......................................................................................................TAACACTGTCTGGTCACGATGTT............................................................... | 23 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .......................................................................................................TAACACTGTCTGGTAACGATGAT............................................................... | 23 | 1 | 1 | 2.00 | 2 | 2 | 0 | 0 |
| .......................................................................................................TAACACTGTCTGGTAACGATGA................................................................ | 22 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .......................................................................................................TAACACTGTCTGGTAACGATGTTC.............................................................. | 24 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .......................................................................................................TAACACTGTCTGGTAACGCTGTTT.............................................................. | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ......................................................................................................ATAACACTGTATGGTAACGATGTT............................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .......................................................................................................TAAAACTGTCTGGTAACGATG................................................................. | 21 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 |
| .......................................................................................................TAACACTGTCTGGTAACGCTGTTA.............................................................. | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .......................................................................................................TAACACTGTCTGGTAACGAT.................................................................. | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................................................................ACTGTCTGGTAACGATGTTA.............................................................. | 20 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 |
| .......................................................................................................TAACACTTTCTGGTAACGATGTT............................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .......................................................................................................TAACACTGTCTAGTAACGATGCTA.............................................................. | 24 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ......................................................................................................ATAACACTGTCTGGTAACGATGT................................................................ | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .......................................................................................................CAACACTGCCTGGTAACGATGTT............................................................... | 23 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| .......................................................................................................CAACACTGTCTGGTAACGATGTT............................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| .......................................................................................................TAACACTGTCTGGTAACGATGTA............................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .......................................................................................................TAACACTGTCTGGCAACGATGTT............................................................... | 23 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .......................................................................................................TAACACTGTCTGCTAACGATGTT............................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 |
| .......................................................................................................TAACACTGTCTGGAAACGATGAT............................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ......................................................................................................ATAACACTGGCTGGTAACGATGTT............................................................... | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ...........................................................................................................ACTGTCTGGTAACGATGTTATAAC.......................................................... | 24 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| .......................................................................................................TAACACTGTCTGGTAACGATGAA............................................................... | 23 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 |
| ......................................................................................................ATAACACTGTGTGGTAACGATGTTT.............................................................. | 25 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 |
| .......................................................................................................TAACACTGTCTGGTAACGATGGCTA............................................................. | 25 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 |
|
ACTCCCACCTTTGGTGTATAGGACGAGACACAGAAGGATGGTTTCGTATGGACCCGGAGACACCCGTAGAATGGCCTGTCACGACCTAAAGAACCGAACTGAGATTGTGACAGACCATTGCTACAAGTTTCCACTGGGTTGTGAGCGGCTTCTGTCCGACTACTATGTGTGAACAGAATCGAGGACCTG
***********************************.........((.....(((((((...(((((((((((((((((((((.((((..((.......)).)))).))))))))))))).)))))))).)))...))))......)).......*********************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | GSM1528818 Adult_testes_Mili_IP |
|---|---|---|---|---|---|---|
| .................................................................................................GCTGAGATTGTGACAGACCAT....................................................................... | 21 | 1 | 1 | 5.00 | 5 | 5 |
| .......................................................................................................................GCTAGAAGTTTCCACTGGG................................................... | 19 | 1 | 2 | 4.00 | 8 | 8 |
| .................................................................................................GCTGAGAATGTGACAGACCAT....................................................................... | 21 | 2 | 1 | 1.00 | 1 | 1 |
| .......................................................................................................................GCTAGAAGTTTCCACCGGG................................................... | 19 | 2 | 7 | 0.14 | 1 | 1 |
Generated: 04/30/2015 at 05:45 PM