ID:

rno-mir-1b

 Coordinate:

chr3:175769716-175769800 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

GCTTGTGTCGGGCCACTTCTCGGAGCCCCTTCCCTGTGCACCCTGAACTACCTGCTTGGGACACATACTTCTTTATATGCCCATATGGACCTGCTAAGCTATGGAATGTAAAGAAGTATGTATTTCAGGCTAGGAACTCTCTCGCCAGACTGAGGGGTGGCCCGTGCCTTGTGGGTGGCTGCTCA
***********************************************...(((((((((((.((((((((((((((((..((((((((.....)))...))))).)))))))))))))))).)))))))).)))....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
.....................................................................................................TGGAATGTAAAGAAGTATGTAT.............................................................. 22 0 1 353.00 353 348 3 2
.....................................................................................................TGGAATGTAAAGAAGTATGTATT............................................................. 23 0 1 27.00 27 26 1 0
.....................................................................................................TGGAATGTAAAGAAGTATGTAA.............................................................. 22 1 1 24.00 24 17 7 0
.....................................................................................................TGGAATGTAAAGAAGTATGTA............................................................... 21 0 1 11.00 11 11 0 0
.....................................................................................................TGGAATGTAAAGAAGTATGTAC.............................................................. 22 1 1 9.00 9 8 0 1
.....................................................................................................TGGAATGTAAAGAAGTATGTATA............................................................. 23 1 1 8.00 8 8 0 0
......................................................................................................GGAATGTAAAGAAGTATGTAT.............................................................. 21 0 1 8.00 8 8 0 0
..............................................................ACATACTTCTTTATATGCCCATA.................................................................................................... 23 0 1 6.00 6 6 0 0
..............................................................ACATACTTCTTTATATGCCCATAA................................................................................................... 24 1 1 4.00 4 4 0 0
....................................................................................................ATGGAATGTAAAGAAGTATGTAT.............................................................. 23 0 1 4.00 4 4 0 0
.....................................................................................................TGGAATGTAAAGAAGTATGT................................................................ 20 0 1 4.00 4 4 0 0
.....................................................................................................TGGAATGTAAAGAAGTATGTATTT............................................................ 24 0 1 3.00 3 3 0 0
.....................................................................................................TGGAATGTAAAGAAGTATGTACT............................................................. 23 1 1 3.00 3 3 0 0
.....................................................................................................TGGAATGCAAAGAAGTATGTAT.............................................................. 22 1 1 2.00 2 2 0 0
.....................................................................................................TGGAATGTAACGAAGTATGTAT.............................................................. 22 1 1 2.00 2 2 0 0
.....................................................................................................TGGAATGTCAAGAAGTATGTAT.............................................................. 22 1 1 2.00 2 2 0 0
.....................................................................................................TGGAATGTAAAGAAGCATGTAT.............................................................. 22 1 1 2.00 2 2 0 0
.....................................................................................................TGGAATGTAAAGACGTATGTAT.............................................................. 22 1 1 2.00 2 2 0 0
.....................................................................................................TGGCATGTCAAGAAGTATGTAT.............................................................. 22 2 2 1.50 3 3 0 0
.....................................................................................................TGGAATGTAACGAAGTATG................................................................. 19 1 1 1.00 1 1 0 0
.....................................................................................................TGGAATGTAAAGAAGTATGTATTTC........................................................... 25 0 1 1.00 1 1 0 0
.....................................................................................................TGGAATGTAAGGAAGTATGTAT.............................................................. 22 1 1 1.00 1 1 0 0
.....................................................................................................TGGAATGTACAGAAGTATGTAT.............................................................. 22 1 1 1.00 1 1 0 0
.....................................................................................................CGGAATGTAAAGAAGTATGTAT.............................................................. 22 1 1 1.00 1 1 0 0
......................................................................................................GGAATGTCAAGAAGTATGTAT.............................................................. 21 1 1 1.00 1 1 0 0
.....................................................................................................TGGAACGTAAAGAAGTATGTATT............................................................. 23 1 1 1.00 1 1 0 0
.....................................................................................................TGGAATGTAAAGAAGTATGTACA............................................................. 23 2 1 1.00 1 1 0 0
......................................................................................................GGAATGTAAAGAAGTATGTAA.............................................................. 21 1 1 1.00 1 1 0 0
.....................................................................................................TGGGATGTCAAGAAGTATGTAT.............................................................. 22 2 1 1.00 1 1 0 0
..............................................................ACATACTTCTTTATATGCCCAT..................................................................................................... 22 0 1 1.00 1 1 0 0
.....................................................................................................TGGAATGTAAAGAAGGATGTAT.............................................................. 22 1 1 1.00 1 1 0 0
.....................................................................................................TGGAATGTAAAGATGTATGTAT.............................................................. 22 1 1 1.00 1 1 0 0
.....................................................................................................TGGAATGTAAAGAAGTATGTATTTCA.......................................................... 26 0 1 1.00 1 0 0 1
.....................................................................................................TGGAATGTAAAGAAGTCTGTAT.............................................................. 22 1 2 1.00 2 2 0 0
.....................................................................................................TGGAATGTAAAGAAGCATGTATT............................................................. 23 1 1 1.00 1 1 0 0
.....................................................................................................TGGCATGTAAAGAAGTATGTATT............................................................. 23 1 1 1.00 1 1 0 0
....................................................................................................ATGGAATGTAAAGAAGTATGTATT............................................................. 24 0 1 1.00 1 1 0 0
.......................................................................................................GAATGTAAAGAAGTATGTCT.............................................................. 20 1 1 1.00 1 1 0 0
.....................................................................................................TGGAGTGTAAAGAAGTATGTATT............................................................. 23 1 1 1.00 1 1 0 0
..............................................................ACATACTTCTTTATATGCCCATAT................................................................................................... 24 0 1 1.00 1 1 0 0
.....................................................................................................TGGAATGTCAAGAAGTATGTATT............................................................. 23 1 1 1.00 1 1 0 0
.....................................................................................................TGGAATGTAAAGAAGAATGTAT.............................................................. 22 1 2 0.50 1 1 0 0
....................................................................................................TTGGAATGTAAAGAAGTATGTA............................................................... 22 1 2 0.50 1 1 0 0
.....................................................................................................TGGAATGTAAAGAAGTATGTAAA............................................................. 23 2 2 0.50 1 1 0 0
.....................................................................................................TGGCATGTAAAGAAGTCTGTAT.............................................................. 22 2 2 0.50 1 1 0 0
.....................................................................................................TGGAATGTCAAGAAGTATGTAA.............................................................. 22 2 2 0.50 1 1 0 0
......................................................................................................GGCATGTAAAGAAGTATGTAT.............................................................. 21 1 2 0.50 1 1 0 0
.....................................................................................................TGGAATGTCAAGAAGTATGTAC.............................................................. 22 2 3 0.33 1 1 0 0
.....................................................................................................TGGCATGTAAAGACGTATGTAT.............................................................. 22 2 3 0.33 1 1 0 0
......................................................................................................GGAGTGTAAAGAAGTATGTAA.............................................................. 21 2 5 0.20 1 0 1 0
............................................................................................................TAAAGAAGTATGTATT............................................................. 16 0 10 0.10 1 1 0 0
........................................................................................................AACGTAAAGAAGTATGTAA.............................................................. 19 2 20 0.05 1 0 1 0

Anti-sense strand reads

CGAACACAGCCCGGTGAAGAGCCTCGGGGAAGGGACACGTGGGACTTGATGGACGAACCCTGTGTATGAAGAAATATACGGGTATACCTGGACGATTCGATACCTTACATTTCTTCATACATAAAGTCCGATCCTTGAGAGAGCGGTCTGACTCCCCACCGGGCACGGAACACCCACCGACGAGT
***********************************************...(((((((((((.((((((((((((((((..((((((((.....)))...))))).)))))))))))))))).)))))))).)))....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:43 PM