ID:

rno-mir-196b-1

 Coordinate:

chr4:82199056-82199140 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.9 -34.9
mature
  1. chr4:82199103-82199125 -
  2. chr4:82284898-82284920 -
  3. chr4_KL567939v1_random:100509-100531 -
star
  1. chr4:82199068-82199090 -
  2. chr4:82284863-82284885 -
  3. chr4_KL567939v1_random:100474-100496 -

Sense Strand Reads

GGCGGCGACAGTGGCGGCAGCGGAGGCGGCGAGGGGCGAGGCAGCATCTGAACTGGTCGGTGATTTAGGTAGTTTCCTGTTGTTGGGATCCACCTTTCTCTCGACAGCACGACACTGCCTTCATTACTTCAGTTGAAAGCGTCTCCAGGTACCTGTACTGAGCAGCCCGGGGTGGCCAGGATGGC
**************************************************((((((..((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..))))))))))))....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
.................................................................TAGGTAGTTTCGTGTTGTTGGGA................................................................................................. 23 1 5 155.80 779 779 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGGAT................................................................................................ 24 1 4 41.00 164 164 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGGAA................................................................................................ 24 2 6 30.00 180 180 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGA................................................................................................. 23 0 3 16.67 50 50 0 0
..................................................................AGGTAGTTTCGTGTTGTTGGGA................................................................................................. 22 1 5 16.60 83 83 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGT................................................................................................. 23 1 3 15.00 45 45 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGG.................................................................................................. 22 0 3 11.33 34 34 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGAA................................................................................................. 23 2 6 8.50 51 51 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGGTT................................................................................................ 24 2 5 8.40 42 42 0 0
..................................................................AGGTAGTTTCGTGTTGTTGGGAT................................................................................................ 23 1 4 8.25 33 33 0 0
..................................................................AGGTAGTTTCGTGTTGTTGGGAA................................................................................................ 23 2 6 6.83 41 41 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGAT................................................................................................ 24 0 3 5.00 15 15 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGATCCG............................................................................................. 27 1 3 3.33 10 0 10 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGAA................................................................................................ 24 1 3 3.00 9 9 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGTT................................................................................................ 24 1 3 2.67 8 8 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGG................................................................................................... 21 0 3 2.67 8 7 0 1
................................................................ATAGGTAGTTTCGTGTTGTTGGGA................................................................................................. 24 2 6 2.50 15 15 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGTCG............................................................................................... 25 3 4 2.50 10 0 10 0
.................................................................TAGGTAGTTTCCTGTTGTTGGT.................................................................................................. 22 1 4 2.25 9 5 4 0
..................................................................AGGTAGTTTCGTGTTGTTGGGTT................................................................................................ 23 2 5 1.60 8 8 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGTTA............................................................................................... 25 2 3 1.33 4 4 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGAAT............................................................................................... 25 2 4 1.25 5 5 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGTTT............................................................................................... 25 2 4 1.25 5 5 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGTA................................................................................................. 23 2 5 1.20 6 6 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGTA................................................................................................ 24 2 3 1.00 3 3 0 0
....................................................................................................TCGACAGCACGACACTGCCTTCA.............................................................. 23 0 3 1.00 3 3 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGCA................................................................................................. 23 2 5 1.00 5 5 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGTAA............................................................................................... 25 3 5 1.00 5 5 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGGAG................................................................................................ 24 2 5 1.00 5 5 0 0
................................................................ATAGGTAGTTTCCTGTTGTTGGGA................................................................................................. 24 1 3 1.00 3 3 0 0
...................................................................GGTAGTTTCGTGTTGTTGGGA................................................................................................. 21 1 5 1.00 5 5 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGGAGA............................................................................................... 25 3 7 0.86 6 6 0 0
...............................................................GTTAGGTAGTTTCGTGTTGTTGG................................................................................................... 23 2 5 0.80 4 4 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGAA................................................................................................. 23 1 4 0.75 3 3 0 0
................................................................TTAGGTAGTTTCGTGTTGTTGGGA................................................................................................. 24 1 4 0.75 3 3 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGAAT................................................................................................ 24 2 4 0.75 3 3 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGTAT............................................................................................... 25 3 7 0.71 5 5 0 0
.....................................................................................................CGACAGCACGACACTGCCTTCAA............................................................. 23 1 3 0.67 2 2 0 0
.................................................................TAGGTAGTTTCCTGTTTTTGGGA................................................................................................. 23 1 3 0.67 2 2 0 0
....................................................................................................TCGACAGCACGACACTGCCTTTA.............................................................. 23 1 3 0.67 2 2 0 0
..................................................................AGGTAGTTTCGTGTTGTTGGAA................................................................................................. 22 2 6 0.67 4 4 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGTTAT.............................................................................................. 26 3 3 0.67 2 2 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGT................................................................................................... 21 1 3 0.67 2 2 0 0
................................................................ATAGGTAGTTTCCTGTTGTTGGG.................................................................................................. 23 1 3 0.67 2 2 0 0
..................................................................AGGTAGTTTCCTGTTGTTGGGA................................................................................................. 22 0 3 0.67 2 2 0 0
.................................................................TAGGAAGTTTCGTGTTGTTGGGA................................................................................................. 23 2 6 0.67 4 4 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGCAT................................................................................................ 24 2 4 0.50 2 2 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGTTAA.............................................................................................. 26 3 4 0.50 2 2 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGGAAG............................................................................................... 25 3 6 0.50 3 3 0 0
.................................................................TACGTAGTTTCGTGTTGTTGGGAT................................................................................................ 24 2 4 0.50 2 2 0 0
..................................................................AGGTAGTTTCGTGTTGTTGGGAGA............................................................................................... 24 3 9 0.44 4 4 0 0
................................................................ATAGGTAGTTTCGTGTTGTTGGGTT................................................................................................ 25 3 5 0.40 2 2 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGGTTA............................................................................................... 25 3 5 0.40 2 2 0 0
..................................................................AGGTAGTTTCGTGTTGTTGGGTTA............................................................................................... 24 3 5 0.40 2 2 0 0
.................................................................TAGGTAGTTTCTTGTTGTTGGGT................................................................................................. 23 2 5 0.40 2 2 0 0
................................................................ATAGGTAGTTTCCTGTTGTTGGGTTT............................................................................................... 26 3 5 0.40 2 2 0 0
.................................................................TAGGTGGTTTCGTGTTGTTGGGA................................................................................................. 23 2 5 0.40 2 2 0 0
..................................................................AGGTAGTTTCGTGTTGTTGGGAG................................................................................................ 23 2 5 0.40 2 2 0 0
....................................................................GTAGTTTCGTGTTGTTGGGA................................................................................................. 20 1 5 0.40 2 2 0 0
.................................................................TCGGTAGTTTCCTGTTGTTGGG.................................................................................................. 22 1 3 0.33 1 1 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGATCC.............................................................................................. 26 0 3 0.33 1 1 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGG................................................................................................. 23 1 3 0.33 1 1 0 0
.................................................................TAGGTAGTTTAGTGTTGTTGGGA................................................................................................. 23 2 6 0.33 2 2 0 0
.................................................................TAGGTAGTTTCCTGCTGTTGGGA................................................................................................. 23 1 3 0.33 1 1 0 0
..................................................................AGGTAGTTTCCTGTTGTTGG................................................................................................... 20 0 3 0.33 1 0 0 1
.................................................................TAGGTAGTTTCCTGTTGTTGGCA................................................................................................. 23 1 3 0.33 1 1 0 0
..................................................................AGGTAGTTTCCTGTTGTTG.................................................................................................... 19 0 3 0.33 1 1 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGTCG................................................................................................. 23 3 9 0.33 3 0 3 0
....................................................................................................TCGACAGCACGACACTGCCTTCAA............................................................. 24 1 3 0.33 1 1 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGTG................................................................................................ 24 2 3 0.33 1 1 0 0
.................................................................TAGGAAGTTTCCTGTTGTTGGGA................................................................................................. 23 1 3 0.33 1 1 0 0
..................................................................AGGTAGTTTCCTGTTGTTGGGT................................................................................................. 22 1 3 0.33 1 1 0 0
..................................................................AGGTAGTTTCCTGTTGTTGGGTT................................................................................................ 23 1 3 0.33 1 1 0 0
.................................................................TAGGTAGTTTACTGTTGTTGGGAT................................................................................................ 24 1 3 0.33 1 1 0 0
................................................................ATAGGTAGTTTCCTGTTGTTGAG.................................................................................................. 23 2 3 0.33 1 1 0 0
....................................................................................................TCGACAGCACGACACTGCCTTGA.............................................................. 23 1 3 0.33 1 1 0 0
..................................................................AGGTAGTTTCGTGTTGTTGGGAAC............................................................................................... 24 2 3 0.33 1 1 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGGAAC............................................................................................... 25 2 3 0.33 1 1 0 0
.................................................................TAGGGAGTTTCGTGTTGTTGGGA................................................................................................. 23 2 6 0.33 2 2 0 0
.................................................................GAGGTAGTTTCCTGTTGTTGGGGT................................................................................................ 24 2 3 0.33 1 1 0 0
.................................................................TAGGTAGTTTCATGTTGTTGGGATCCG............................................................................................. 27 2 3 0.33 1 0 1 0
.................................................................TAGGTAGTTTCGTTTTGTTGGGAA................................................................................................ 24 3 7 0.29 2 2 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGTAA................................................................................................ 24 3 7 0.29 2 2 0 0
..................................................................AGGTAGTTTCGTCTTGTTGGGAT................................................................................................ 23 2 4 0.25 1 1 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGTAT................................................................................................ 24 2 4 0.25 1 1 0 0
.................................................................AAGGTAGTTTCGTGTTGTTGGGAT................................................................................................ 24 2 4 0.25 1 1 0 0
..................................................................AGGTAGTTTCGTGTTGTTGGGAAG............................................................................................... 24 3 8 0.25 2 2 0 0
................................................................ATAGGTAGATTCCTGTTGTTGGG.................................................................................................. 23 2 4 0.25 1 1 0 0
.................................................................TAGGAAGTTTCGTGTTGTTGGGAT................................................................................................ 24 2 4 0.25 1 1 0 0
.................................................................TAGGAAGTTTCGTATTGTTGGGAT................................................................................................ 24 3 4 0.25 1 1 0 0
.................................................................TAGGTAGTTTCCTCTTGTTGGGATT............................................................................................... 25 2 4 0.25 1 1 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGGATAT.............................................................................................. 26 3 4 0.25 1 1 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGATT............................................................................................... 25 1 4 0.25 1 1 0 0
.................................................................TAGGTAGTTTCGTATTGTTGGGAT................................................................................................ 24 2 4 0.25 1 1 0 0
..................................................................AGGTCGTTTCGTGTTGTTGGGAT................................................................................................ 23 2 4 0.25 1 1 0 0
.................................................................TAGGTAGTTTCGTGATGTTGGGAT................................................................................................ 24 2 4 0.25 1 1 0 0
.................................................................TAGGTAGTTTAGTGTTGTTGGGAT................................................................................................ 24 2 4 0.25 1 1 0 0
.................................................................TGGGTAGTTTCGTGTTGTTGGGAT................................................................................................ 24 2 4 0.25 1 1 0 0
.................................................................TAGGTAGTTTCGCGTTGTTGGGA................................................................................................. 23 2 5 0.20 1 1 0 0
..................................................................AGGTAGTTTCGTGTTGTCGGGA................................................................................................. 22 2 5 0.20 1 1 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGTTTT.............................................................................................. 26 3 5 0.20 1 1 0 0
.................................................................TAGGTAGTTTCGTGCTGTTGGGA................................................................................................. 23 2 5 0.20 1 1 0 0
.................................................................TAGTTAGTTTCGTGTTGTTGGGA................................................................................................. 23 2 5 0.20 1 1 0 0
................................................................TGAGGTAGTTTCGTGTTGTTGGG.................................................................................................. 23 2 5 0.20 1 1 0 0
.................................................................TAGGTAGTTTGGTGTTGTTGGGA................................................................................................. 23 2 5 0.20 1 1 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGGAGAA.............................................................................................. 26 3 5 0.20 1 1 0 0
.................................................................TCGGTAGTTTCGTGTTGTTGGGA................................................................................................. 23 2 5 0.20 1 1 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGGGT................................................................................................ 24 2 5 0.20 1 1 0 0
.................................................................TAGGTAGTTTCGTATTGTTGGGA................................................................................................. 23 2 5 0.20 1 1 0 0
.....................................................................TAGTTTCGTGTTGTTGGGA................................................................................................. 19 1 5 0.20 1 1 0 0
.................................................................TGGGTAGTTTCGTGTTGTTGGGA................................................................................................. 23 2 5 0.20 1 1 0 0
..................................................................AGGTAGTTTCGAGTTGTTGGGA................................................................................................. 22 2 5 0.20 1 1 0 0
.................................................................TAGGTAGTTTCCTTTTGTTGGGT................................................................................................. 23 2 5 0.20 1 1 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGAT................................................................................................. 23 2 5 0.20 1 1 0 0
.................................................................TAGGTAGTTTCGTTTTGTTGGGA................................................................................................. 23 2 5 0.20 1 1 0 0
................................................................TGAGGTAGTTTCGTGTTGTTGGGTT................................................................................................ 25 3 5 0.20 1 1 0 0
.................................................................TAGGTAGTTTCTTGTTGTTGGG.................................................................................................. 22 1 5 0.20 1 1 0 0
.................................................................TAGGTCGTTTCGTGTTGTTGGGA................................................................................................. 23 2 5 0.20 1 1 0 0
.................................................................TAGGTACTTTCGTGTTGTTGGGA................................................................................................. 23 2 5 0.20 1 1 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGAGA................................................................................................. 23 2 5 0.20 1 1 0 0
.................................................................TAAGTAGTTTCGTGTTGTTGGGA................................................................................................. 23 2 5 0.20 1 1 0 0
.................................................................TAGGTAGTTTCGTGTTGTTCGGA................................................................................................. 23 2 5 0.20 1 1 0 0
..................................................................AGGTAGTTTCGTGTTGTTGGGGT................................................................................................ 23 2 5 0.20 1 1 0 0
.................................................................TAGGTAGTCTCGTGTTGTTGGGAA................................................................................................ 24 3 6 0.17 1 1 0 0
...................................................................GGTAGTTTCGTGTTGTTGGGAA................................................................................................ 22 2 6 0.17 1 1 0 0
.................................................................TAGGTAGTTTCGTATTGTTGGGAA................................................................................................ 24 3 6 0.17 1 1 0 0
................................................................ATGGGTAGTTTCGTGTTGTTGGGA................................................................................................. 24 3 6 0.17 1 1 0 0
..................................................................AGGGAGTTTCGTGTTGTTGGGA................................................................................................. 22 2 6 0.17 1 1 0 0
................................................................ATAGGTAGTTTCGAGTTGTTGGGA................................................................................................. 24 3 6 0.17 1 1 0 0
..................................................................AGGAAGTTTCGTGTTGTTGGGA................................................................................................. 22 2 6 0.17 1 1 0 0
.................................................................TCGGTAGTTTCGTGTTGTTGGGAA................................................................................................ 24 3 6 0.17 1 1 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGGCT................................................................................................. 23 2 6 0.17 1 1 0 0
.................................................................AACGTAGTTTCGTGTTGTTGGGA................................................................................................. 23 3 7 0.14 1 1 0 0
.................................................................TAGGAAGTTTCGTGTTGTTGGGAG................................................................................................ 24 3 7 0.14 1 1 0 0
.................................................................GAGGTAGTTTCCTGTTGTTGGGAAA............................................................................................... 25 3 7 0.14 1 1 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGCAA................................................................................................ 24 3 7 0.14 1 1 0 0
..................................................................AGGTAGTTTCGTGTTGTTGGGATAA.............................................................................................. 25 3 7 0.14 1 1 0 0
.................................................................TAGGAAGTTTCGTGTTGGTGGGA................................................................................................. 23 3 8 0.13 1 1 0 0
.................................................................TAGGTAGTTTCGTGTTGTTGGTTT................................................................................................ 24 3 8 0.13 1 1 0 0
.................................................................TAGGTAGTTTCGTCTTGTTGGGAA................................................................................................ 24 3 8 0.13 1 1 0 0
...................................................................TGTAGTTTCGTGTTGTTGGGA................................................................................................. 21 2 9 0.11 1 1 0 0
..................................................................AGGTAGTTTCGTGTAGTTGGGTT................................................................................................ 23 3 9 0.11 1 1 0 0
..................................................................AGGTAGTTTCGTGTTGTTTGGAA................................................................................................ 23 3 10 0.10 1 1 0 0
.................................................................TAGTTAGTTTCGTGTTGTTGGGAA................................................................................................ 24 3 10 0.10 1 1 0 0
..................................................................AGGTAGTTTTGTGTTGTTGGGA................................................................................................. 22 2 11 0.09 1 1 0 0
.................................................................TAGGTAGTTTAGTGTTGTTGGAA................................................................................................. 23 3 18 0.06 1 1 0 0
.................................................................TAGGTAGTTTCCTGTTGTTGTAG................................................................................................. 23 3 18 0.06 1 0 1 0
.................................................................TAGGTATTTTCGTGTTGTTGGAA................................................................................................. 23 3 19 0.05 1 1 0 0
..................................................................TGGTAGTTTCGTGTTGTTGGAA................................................................................................. 22 3 20 0.05 1 1 0 0

Anti-sense strand reads

CCGCCGCTGTCACCGCCGTCGCCTCCGCCGCTCCCCGCTCCGTCGTAGACTTGACCAGCCACTAAATCCATCAAAGGACAACAACCCTAGGTGGAAAGAGAGCTGTCGTGCTGTGACGGAAGTAATGAAGTCAACTTTCGCAGAGGTCCATGGACATGACTCGTCGGGCCCCACCGGTCCTACCG
***********************************************((((((..((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..))))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:45 PM