ID:

rno-mir-1956

Coordinate:

chr2:243819838-243819900 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

TGAGTCAACGTCAAGAGTCATAGTTGACCCGGCTTAACGACTCCTGACCCTCAGTCCAGGGCTGAGTCAGCGGAGCCCGGAGTGGCTTCCCTGGCTGGCACCTGGACGTAGGCTATTTCCGTTCACGTCCAAGCAGAATACTGGAACCGATTGGACAGAACTT
***********************************((((.........(((..((((((((((.((((((.((((((......)))))).))))))))).)))))))..))).......)))).....***********************************
Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
GSM1528817
Adult_testes
....................................................AGTCCAGGGCTGAGTCAGCGGATT....................................................................................... 24 2 1 2.00 2 2 0
....................................................AGTCCAGGGCTGAGTCAGCGGAT........................................................................................ 23 1 1 2.00 2 2 0
....................................................AGTCCAGGGCTGAGTCAGCGGATTT...................................................................................... 25 3 2 1.00 2 2 0
....................................................AGTCCAGGGCTGAGTCAGCGGATAT...................................................................................... 25 3 1 1.00 1 1 0
.........................................................................................................................TTCACGTCCAAGCAGAATACTGGAACCGATT........... 31 0 1 1.00 1 0 1
....................................................AGTCCAGGGCTGAGTCAGCGGAA........................................................................................ 23 1 1 1.00 1 1 0

Anti-sense strand reads

ACTCAGTTGCAGTTCTCAGTATCAACTGGGCCGAATTGCTGAGGACTGGGAGTCAGGTCCCGACTCAGTCGCCTCGGGCCTCACCGAAGGGACCGACCGTGGACCTGCATCCGATAAAGGCAAGTGCAGGTTCGTCTTATGACCTTGGCTAACCTGTCTTGAA
***********************************((((.........(((..((((((((((.((((((.((((((......)))))).))))))))).)))))))..))).......)))).....***********************************
Read size # Mismatch Hit Count Total Norm Total GSM1528817
Adult_testes
GSM1528819
10dpp_testes
..................................................AGTCAGGTCCCGACTCAGTCGCC.......................................................................................... 23 0 1 1.00 1 0 1
.....................................................................................................GACCTGCATCCGATAAAGGCAAGT...................................... 24 0 1 1.00 1 1 0
..................................................................................................GTGGACCTGCATCCGA................................................. 16 0 2 0.50 1 1 0

Generated: 04/30/2015 at 05:42 PM