ID:

rno-mir-194-2

 Coordinate:

chr1:221634786-221634870 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-54.2 -54.1 -54.1

Sense Strand Reads

CCCAGGATCCTGCCGGAGAGGAGGTGCCTGCAACTGTGCTCTGACCCCCATGGCTCCCACCCCCTGTAACAGCAACTCCATGTGGAAGTGCCCACTGATTCCAGTGGGGCTGCTGTTATCTGGGGTGGAGGCTGGTGCCTGCAGAGGAGGAGTCACAGCCACCCAGCACTCCAGGAGAAACTCAA
***********************************...(((((.......(((((.(((((((..(((((((((.((((((.(((((...........))))))))))).)))))))))..))))))).))))).......)))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
................................................................TGTAACAGCAACTCCATGTGGAA.................................................................................................. 23 0 1 307.00 307 293 6 8
................................................................TGTAACAGCAACTCCATGTGGAAA................................................................................................. 24 1 1 102.00 102 97 5 0
................................................................TGTAACAGCAACTCCATGTGGAAT................................................................................................. 24 1 2 58.50 117 113 4 0
................................................................TGTAACAGCAACTCCATGTGGA................................................................................................... 22 0 2 48.00 96 74 22 0
................................................................TGTAACAGCAACTCCATGTGGAT.................................................................................................. 23 1 2 12.50 25 24 1 0
................................................................TGTAACAGCAACTCCATGTGGAAAT................................................................................................ 25 1 1 11.00 11 11 0 0
.................................................................GTAACAGCAACTCCATGTGGAA.................................................................................................. 22 0 1 10.00 10 10 0 0
................................................................TGTAACAGCAACTCCATGTGGAATT................................................................................................ 25 1 1 8.00 8 8 0 0
................................................................TGTAACAGCAACTCCATGTGG.................................................................................................... 21 0 2 6.50 13 13 0 0
................................................................TGTAACAGCAACTCCATGTGGAAAA................................................................................................ 25 2 2 4.50 9 7 2 0
................................................................TGTCACAGCAACTCCATGTGGAA.................................................................................................. 23 1 1 4.00 4 4 0 0
................................................................TGTAACAGCAACTCCATGTGGATAT................................................................................................ 25 2 1 3.00 3 3 0 0
................................................................TGTAACAGCACCTCCATGTGGAA.................................................................................................. 23 1 1 3.00 3 3 0 0
................................................................TGTAACAGCAACTCCATGTGGAAATAC.............................................................................................. 27 2 1 2.00 2 2 0 0
................................................................TGTAACAGCAACTCCATGTGGCA.................................................................................................. 23 1 1 2.00 2 2 0 0
................................................................TGTAACAGCAACTCCATGTGGAAG................................................................................................. 24 0 1 2.00 2 2 0 0
.................................................................GTAACAGCAACTCCATGTGGAAT................................................................................................. 23 1 2 2.00 4 4 0 0
................................................................TGTAACAGCAACTACATGTGGAA.................................................................................................. 23 1 1 2.00 2 2 0 0
.................................................................GTAACAGCAACTCCATGTGGAT.................................................................................................. 22 1 2 2.00 4 4 0 0
................................................................TGTAACAGCAACTCCATGTGAAAA................................................................................................. 24 2 1 2.00 2 2 0 0
................................................................TGTAACAGCAACTCCATGTGGGA.................................................................................................. 23 1 1 2.00 2 2 0 0
................................................................TGTAACAGCAACTCCATTTGGAAA................................................................................................. 24 2 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCCATGTGGAATTA............................................................................................... 26 2 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCCATGAGGAAA................................................................................................. 24 2 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCAATGTGGAAA................................................................................................. 24 2 1 1.00 1 1 0 0
................................................................TGTAACAGCAATTCCATGTGGAA.................................................................................................. 23 1 1 1.00 1 1 0 0
................................................................TTTAACAGCAACTCCATGTGGAA.................................................................................................. 23 1 2 1.00 2 1 0 1
................................................................TGTAACAGAAACTCCATGTGGAA.................................................................................................. 23 1 1 1.00 1 1 0 0
................................................................TGTATCAGCAACTCCATGTGGAA.................................................................................................. 23 1 1 1.00 1 1 0 0
.................................................................GTAACAGCAACTCCATGTGGA................................................................................................... 21 0 2 1.00 2 2 0 0
................................................................TGTAACAGCAACTGCATGTGGAA.................................................................................................. 23 1 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCCATGTGGATTT................................................................................................ 25 2 3 1.00 3 3 0 0
................................................................TGTAACAGCAACTCCATGCGGAA.................................................................................................. 23 1 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCCATGTGGCAA................................................................................................. 24 2 1 1.00 1 1 0 0
................................................................CGTAACAGCAACTCCATGTGGAA.................................................................................................. 23 1 1 1.00 1 1 0 0
....................................................................................................CCAGTGGGGCTGCTGTTATCTGA.............................................................. 23 1 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCCATATGGAA.................................................................................................. 23 1 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCCATGTGGAAGA................................................................................................ 25 1 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCCATGTGGAAGT................................................................................................ 25 0 1 1.00 1 1 0 0
................................................................TGTCACAGCAACTCCATGTGGAAT................................................................................................. 24 2 2 1.00 2 2 0 0
................................................................TGTAACAGCAACTCCATGAGGAA.................................................................................................. 23 1 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCCATGGGGAAA................................................................................................. 24 2 1 1.00 1 1 0 0
................................................................TGTCACAGCAACTCCATGTGGAAA................................................................................................. 24 2 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCCATGTGGATA................................................................................................. 24 2 2 1.00 2 2 0 0
................................................................TGTAACAGCAACTCCATGTGGAG.................................................................................................. 23 1 2 1.00 2 2 0 0
...............................................................ATGTAACAGCAACTCCATGTGGAAA................................................................................................. 25 2 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCCAAGTGGAA.................................................................................................. 23 1 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCCATCTGGAAA................................................................................................. 24 2 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTGCATGTGGAAA................................................................................................. 24 2 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCCATGTGGAAC................................................................................................. 24 1 1 1.00 1 1 0 0
................................................................TGTAACAGCAAATCCATGTGGAA.................................................................................................. 23 1 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCCATGTGGAATTAA.............................................................................................. 27 3 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCCATGTGGTAA................................................................................................. 24 2 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCCAAGTAGAA.................................................................................................. 23 2 1 1.00 1 1 0 0
................................................................TGTAACAGCAACTCCATGTGGAAGAT............................................................................................... 26 2 1 1.00 1 1 0 0
..............................................................AATGTAACAGCAACTCCATGTGGAA.................................................................................................. 25 2 1 1.00 1 1 0 0
..............................................................ATTGTAACAGCAACTCCATGTGG.................................................................................................... 23 2 3 0.67 2 2 0 0
.................................................................GTAACAGCAACTCCATGCGGAAT................................................................................................. 23 2 2 0.50 1 1 0 0
................................................................TGTAACAGCAACTCAATGTGGAAT................................................................................................. 24 2 2 0.50 1 1 0 0
................................................................TGTAACAGCAACTCCATTTGGAAT................................................................................................. 24 2 2 0.50 1 1 0 0
................................................................TGTAACAGCAACTCCATGTGGAATTT............................................................................................... 26 2 2 0.50 1 1 0 0
................................................................TGTAACCGCAACTCCATGTGGAAT................................................................................................. 24 2 2 0.50 1 1 0 0
................................................................TGTAACAGCAACTCCATGTGGAATTTT.............................................................................................. 27 3 2 0.50 1 1 0 0
................................................................TGTAACAGCAACTGCATGTGGAAT................................................................................................. 24 2 2 0.50 1 1 0 0
....................................................................ACAGCAACTCCATGTGGAAT................................................................................................. 20 1 2 0.50 1 0 1 0
................................................................TGTAACAGCAACTCCATGTGGTT.................................................................................................. 23 2 2 0.50 1 1 0 0
...............................................................ATGTAACAGCAACTCCATGTGGA................................................................................................... 23 1 2 0.50 1 1 0 0
...............................................................ATGTAACAGCAACTCCATGTGGAAT................................................................................................. 25 2 2 0.50 1 1 0 0
................................................................TGCAACAGCAACTCCATGTGGA................................................................................................... 22 1 2 0.50 1 0 1 0
................................................................TGTAACAGCAACTTCATGTGGAT.................................................................................................. 23 2 2 0.50 1 1 0 0
................................................................TGTCACAGCAAATCCATGTGGAA.................................................................................................. 23 2 2 0.50 1 1 0 0
................................................................TGCCACAGCAACTCCATGTGGAA.................................................................................................. 23 2 2 0.50 1 1 0 0
................................................................TGTAACAGCAACTCCATGTGGAGA................................................................................................. 24 2 2 0.50 1 1 0 0
................................................................TGTAACAGCAACTTCATGTGGA................................................................................................... 22 1 2 0.50 1 1 0 0
................................................................TGTCACAGCAAATCCATGTGGA................................................................................................... 22 2 3 0.33 1 1 0 0
................................................................TGTAACAGCAACTCCATGTGGAAAAT............................................................................................... 26 3 3 0.33 1 1 0 0
...............................................................ATGTAACAGCAACTCCACGTGGAAA................................................................................................. 25 3 3 0.33 1 1 0 0
................................................................TGTAACAGCAAATCAATGTGGA................................................................................................... 22 2 4 0.25 1 1 0 0
................................................................GGTAACAGCAATTCCATGTGGAT.................................................................................................. 23 3 5 0.20 1 1 0 0
................................................................TGAAACAGCAAATCCATGTGGAAT................................................................................................. 24 3 7 0.14 1 1 0 0
......................................................................AGCAACTCCATGTGGAT.................................................................................................. 17 1 20 0.05 1 0 1 0

Anti-sense strand reads

GGGTCCTAGGACGGCCTCTCCTCCACGGACGTTGACACGAGACTGGGGGTACCGAGGGTGGGGGACATTGTCGTTGAGGTACACCTTCACGGGTGACTAAGGTCACCCCGACGACAATAGACCCCACCTCCGACCACGGACGTCTCCTCCTCAGTGTCGGTGGGTCGTGAGGTCCTCTTTGAGTT
***********************************...(((((.......(((((.(((((((..(((((((((.((((((.(((((...........))))))))))).)))))))))..))))))).))))).......)))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:31 PM