ID:

rno-mir-194-1

 Coordinate:

chr13:103250576-103250658 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-48.6 -47.8 -47.8
mature
  1. chr1:221634800-221634821 +
  2. chr13:103250590-103250611 +
star

Sense Strand Reads

CACACTGAGTGACTAGTGCTTTAAAGCCAAAGCAGTTCTCCGTCAAGCTTATGGAGTCATCACGTGTAACAGCAACTCCATGTGGACTGTGCACAGATCCCAGTGGAGCTGCTGTTACTTTTGATGGCCTCCAGCCTGCTACAAACACTGGAGAGGAAGAGCAGACATTGCTGGGTGGGATTA
***********************************..........(((...(((((((((((...(((((((((.((((((..((((((....))).)))..)))))).)))))))))...)))))).)))))....)))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
................................................................TGTAACAGCAACTCCATGTGGAAT............................................................................................... 24 1 2 58.50 117 113 4
................................................................TGTAACAGCAACTCCATGTGGA................................................................................................. 22 0 2 48.00 96 74 22
................................................................TGTAACAGCAACTCCATGTGGAT................................................................................................ 23 1 2 12.50 25 24 1
................................................................TGTAACAGCAACTCCATGTGG.................................................................................................. 21 0 2 6.50 13 13 0
................................................................TGTAACAGCAACTCCATGTGGATT............................................................................................... 24 1 1 3.00 3 3 0
.................................................................GTAACAGCAACTCCATGTGGAAT............................................................................................... 23 1 2 2.00 4 4 0
.................................................................GTAACAGCAACTCCATGTGGAT................................................................................................ 22 1 2 2.00 4 4 0
................................................................TGTAACAGCAACTCCATGTGGATA............................................................................................... 24 2 2 1.00 2 2 0
............................................................AAAATGTAACAGCAACTCCATGTGGA................................................................................................. 26 3 1 1.00 1 1 0
................................................................TGTCACAGCAACTCCATGTGGAAT............................................................................................... 24 2 2 1.00 2 2 0
.................................................................GTAACAGCAACTCCATGTGGACT............................................................................................... 23 0 1 1.00 1 1 0
................................................................TGTAACAGCAACTCCATGTGGAC................................................................................................ 23 0 1 1.00 1 0 1
................................................................TGTAACAGCAACTCCATGTGGAG................................................................................................ 23 1 2 1.00 2 2 0
................................................................TGTAACAGCAACTCCATGTGGATTT.............................................................................................. 25 2 3 1.00 3 3 0
.................................................................GTAACAGCAACTCCATGTGGAC................................................................................................ 22 0 1 1.00 1 1 0
.................................................................GTAACAGCCACTCCATGTGGACT............................................................................................... 23 1 1 1.00 1 1 0
.................................................................GTAACAGCAACTCCATGTGGA................................................................................................. 21 0 2 1.00 2 2 0
..............................................................ATTGTAACAGCAACTCCATGTGG.................................................................................................. 23 2 3 0.67 2 2 0
................................................................TGTAACCGCAACTCCATGTGGAAT............................................................................................... 24 2 2 0.50 1 1 0
................................................................TGCAACAGCAACTCCATGTGGA................................................................................................. 22 1 2 0.50 1 0 1
...............................................................ATGTAACAGCAACTCCATGTGGA................................................................................................. 23 1 2 0.50 1 1 0
................................................................TGTAACAGCAACTCCATGTGGAATTTT............................................................................................ 27 3 2 0.50 1 1 0
.................................................................GTAACAGCAACTCCATGCGGAAT............................................................................................... 23 2 2 0.50 1 1 0
................................................................TGTAACAGCAACTCCATGTGGAATTT............................................................................................. 26 2 2 0.50 1 1 0
................................................................TGTAACAGCAACTCAATGTGGAAT............................................................................................... 24 2 2 0.50 1 1 0
................................................................TGTAACAGCAACTTCATGTGGA................................................................................................. 22 1 2 0.50 1 1 0
....................................................................ACAGCAACTCCATGTGGAAT............................................................................................... 20 1 2 0.50 1 0 1
................................................................TGTAACAGCAACTCCATGTGGTT................................................................................................ 23 2 2 0.50 1 1 0
................................................................TGTAACAGCAACTTCATGTGGAT................................................................................................ 23 2 2 0.50 1 1 0
................................................................TGTAACAGCAACTCCATGTGGAGA............................................................................................... 24 2 2 0.50 1 1 0
................................................................TGTAACAGCAACTGCATGTGGAAT............................................................................................... 24 2 2 0.50 1 1 0
................................................................TGTAACAGCAACTCCATTTGGAAT............................................................................................... 24 2 2 0.50 1 1 0
...............................................................ATGTAACAGCAACTCCATGTGGAAT............................................................................................... 25 2 2 0.50 1 1 0
................................................................TGTAACAGCAACTCCATGTGGAAAAT............................................................................................. 26 3 3 0.33 1 1 0
................................................................TGTCACAGCAAATCCATGTGGA................................................................................................. 22 2 3 0.33 1 1 0
................................................................TGTAACAGCAAATCAATGTGGA................................................................................................. 22 2 4 0.25 1 1 0
................................................................GGTAACAGCAATTCCATGTGGAT................................................................................................ 23 3 5 0.20 1 1 0
................................................................TGAAACAGCAAATCCATGTGGAAT............................................................................................... 24 3 7 0.14 1 1 0
......................................................................AGCAACTCCATGTGGAT................................................................................................ 17 1 20 0.05 1 0 1

Anti-sense strand reads

GTGTGACTCACTGATCACGAAATTTCGGTTTCGTCAAGAGGCAGTTCGAATACCTCAGTAGTGCACATTGTCGTTGAGGTACACCTGACACGTGTCTAGGGTCACCTCGACGACAATGAAAACTACCGGAGGTCGGACGATGTTTGTGACCTCTCCTTCTCGTCTGTAACGACCCACCCTAAT
***********************************..........(((...(((((((((((...(((((((((.((((((..((((((....))).)))..)))))).)))))))))...)))))).)))))....)))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528818
Adult_testes_Mili_IP
....................................................................................................................................................ACCTCTCCTTCTCGGCTGTAG.............. 21 2 4 0.25 1 1

Generated: 04/30/2015 at 05:35 PM