ID:

rno-mir-193a

 Coordinate:

chr10:67065896-67065981 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

TCATGCCCCGGGCAGCCCGTCGGGGGGCGCACGGCATCCCGAACTCCAAGGCGGACGGGAGCTGAGAGCTGGGTCTTTGCGGGCAAGATGAGGGTGTCAGTTCAACTGGCCTACAAAGTCCCAGTCCTCGGCTCCCAGGACCGGCATTTTCTCCACGCTCCTCGCCCCCCCCCCCAAGCCCACCCT
******************************************************..((((((((((.((((((.(((((.((((.((.((((........)))).)).)))).))))).)))))).))))))))))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
.......................................................................................................AACTGGCCTACAAAGTCCCAGTA............................................................ 23 1 1 153.00 153 124 29 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTAA........................................................... 24 2 1 148.00 148 130 17 1
.......................................................................................................AACTGGCCTACAAAGTCCCAGTAT........................................................... 24 2 1 82.00 82 80 2 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTAGA.......................................................... 25 3 1 45.00 45 44 0 1
.......................................................................................................AACTGGCCTACAAAGTCCCAGTAG........................................................... 24 2 1 34.00 34 19 15 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTT............................................................ 23 1 1 27.00 27 27 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTAAT.......................................................... 25 2 1 27.00 27 27 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTAAA.......................................................... 25 3 2 21.50 43 37 6 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGT............................................................. 22 0 1 20.00 20 20 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTAGT.......................................................... 25 2 1 18.00 18 18 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGAA............................................................ 23 2 1 15.00 15 14 1 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTGAT.......................................................... 25 2 1 15.00 15 0 15 0
.......................................................................................................AACTGGCCTACAAAGTCCCAG.............................................................. 21 0 1 14.00 14 14 0 0
.....................................................................TGGGTCTTTGCGGGCAAGATGA............................................................................................... 22 0 1 12.00 12 8 2 2
.......................................................................................................AACTGGCCTACAAAGTCCCAGTATT.......................................................... 25 2 1 11.00 11 10 0 1
.......................................................................................................AACTGGCCTACAAAGTCCCA............................................................... 20 0 1 10.00 10 10 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGA............................................................. 22 1 1 9.00 9 7 0 2
.......................................................................................................AACTGGCCTACAAAGTCCCAGTTA........................................................... 24 2 1 9.00 9 9 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTGA........................................................... 24 2 1 8.00 8 8 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGAT............................................................ 23 2 1 8.00 8 8 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTTGA.......................................................... 25 3 1 7.00 7 7 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTTT........................................................... 24 2 1 7.00 7 5 0 2
.......................................................................................................AACTGGCCTACAAAGTCCCAATAT........................................................... 24 3 1 6.00 6 6 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTTTT.......................................................... 25 2 1 5.00 5 5 0 0
......................................................................................................AAACTGGCCTACAAAGTCCCAGTAG........................................................... 25 3 1 4.00 4 0 4 0
.......................................................................................................AACTGGCCTACAACGTCCCAGTA............................................................ 23 2 1 4.00 4 2 2 0
.....................................................................TGGGTCTTTGCGGGCAAGATGAA.............................................................................................. 23 1 1 4.00 4 4 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTTAA.......................................................... 25 3 1 4.00 4 4 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGAAT........................................................... 24 3 3 3.67 11 10 1 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTAAG.......................................................... 25 3 1 3.00 3 3 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTATA.......................................................... 25 3 1 3.00 3 3 0 0
........................................................................................................ACTGGCCTACAAAGTCCCAGTA............................................................ 22 1 1 3.00 3 3 0 0
.......................................................................................................AACTGGCCTACAAGGTCCCAGTA............................................................ 23 2 1 3.00 3 3 0 0
.......................................................................................................AACTGGCCTACAACGTCCCAGTAA........................................................... 24 3 1 3.00 3 2 1 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGCAA........................................................... 24 3 1 3.00 3 3 0 0
........................................................................................................ACTGGCCTACAAAGTCCCAGT............................................................. 21 0 1 3.00 3 3 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTGAA.......................................................... 25 3 1 3.00 3 3 0 0
........................................................................................................ACTGGCCTACAAAGTCCCAGTT............................................................ 22 1 1 3.00 3 3 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGAAA........................................................... 24 3 7 2.57 18 16 1 1
.......................................................................................................AACTGGCCTACAAAGTCC................................................................. 18 0 1 2.00 2 0 0 2
.......................................................................................................AACTGGCCTACAAAGTCCCAGTATC.......................................................... 25 3 1 2.00 2 2 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTTAT.......................................................... 25 2 1 2.00 2 1 1 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTG............................................................ 23 1 1 2.00 2 2 0 0
........................................................................................................ACTGGCCTACAAAGTCCCAGTAT........................................................... 23 2 2 2.00 4 4 0 0
......................................................................................................AAACTGGCCTACAAAGTCCCAGTAT........................................................... 25 3 1 2.00 2 2 0 0
.......................................................................................................AACTGGCCTACCAAGTCCCAGTA............................................................ 23 2 1 2.00 2 1 1 0
.......................................................................................................AACTGGCCTACAAAGTCCC................................................................ 19 0 1 2.00 2 0 0 2
......................................................................................................AAACTGGCCTACAAAGTCCCAGTA............................................................ 24 2 1 2.00 2 2 0 0
.......................................................................................................AACTGGCCTACCAAGTCCCAGTAAT.......................................................... 25 3 1 2.00 2 2 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAATT............................................................ 23 2 1 2.00 2 2 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAATATT.......................................................... 25 3 1 2.00 2 2 0 0
.........................................................................................................CTGGCCTACAAAGTCCCAGTA............................................................ 21 1 1 2.00 2 2 0 0
.....................................................................TGGGTCTTTGCGGGCAAGATGT............................................................................................... 22 1 1 2.00 2 2 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTGG........................................................... 24 2 1 2.00 2 2 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTAC........................................................... 24 1 1 2.00 2 2 0 0
......................................................................................................AAACTGGCCTACAAAGTCCCAGTAA........................................................... 25 3 1 2.00 2 2 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTACT.......................................................... 25 1 1 2.00 2 2 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGATT........................................................... 24 3 3 1.33 4 4 0 0
.......................................................................................................AACTGGCCTACAAAGTCCAAGTC............................................................ 23 1 1 1.00 1 0 1 0
.......................................................................................................AACTGGCCTACAAAATCCCAGTATT.......................................................... 25 3 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAACGTCCCAGTATT.......................................................... 25 3 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTAGG.......................................................... 25 3 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGGCCCA............................................................... 20 1 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTAAAAAGTCCCAGTA............................................................ 23 2 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAACGTCCCAGTAG........................................................... 24 3 1 1.00 1 0 1 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGCA............................................................ 23 2 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAATGTCCCAGTA............................................................ 23 2 1 1.00 1 1 0 0
.....................................................................TGGGTCTTTGCAGGCAAGATGA............................................................................................... 22 1 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTC.................................................................. 17 0 1 1.00 1 0 0 1
.......................................................................................................AACTGGCCTACCAAGTCCCAGTAT........................................................... 24 3 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTAGTT......................................................... 26 3 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAACGTCCCAGAA............................................................ 23 3 2 1.00 2 1 1 0
.......................................................................................................AACTGGCCTACAAAGTACCAGTA............................................................ 23 2 1 1.00 1 0 1 0
.......................................................................................................AACTGGCCTACCAAGTCCCAGTCT........................................................... 24 2 1 1.00 1 0 1 0
.......................................................................................................AACTGGCCTACAACGTCCCAGTAC........................................................... 24 2 1 1.00 1 1 0 0
........................................................................................................ACTGGCCTACAAAGTCCCAGA............................................................. 21 1 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGGCCCAGTAAT.......................................................... 25 3 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGGCCCAGTA............................................................ 23 2 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAT.............................................................. 21 1 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGAC............................................................ 23 1 1 1.00 1 1 0 0
.....................................................................TGGGTCTTTGCGGGCAAGA.................................................................................................. 19 0 1 1.00 1 0 1 0
........................................................................................................ACTGGCCTACAAAGTCCCAGTAAT.......................................................... 24 2 1 1.00 1 1 0 0
.....................................................................TGGGGCTTTGCGGGCAAGATGAA.............................................................................................. 23 2 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAACGTCCCAGTAAT.......................................................... 25 3 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTGT........................................................... 24 2 2 1.00 2 2 0 0
.......................................................................................................AACGGGCCTACAAAGTCCCAGTAA........................................................... 24 3 1 1.00 1 1 0 0
.....................................................................TGGGTCTTTGCGGGCAAGATGAT.............................................................................................. 23 1 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTATTT......................................................... 26 3 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAAG............................................................. 22 2 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAATGTCCCAGTAA........................................................... 24 3 2 1.00 2 2 0 0
.......................................................................................................AACAGGCCTACAAAGTCCCAGTAA........................................................... 24 3 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGATTT.......................................................... 25 3 2 1.00 2 2 0 0
.......................................................................................................AACTGGCCTACAACGTCCCAGAAC........................................................... 24 3 1 1.00 1 1 0 0
.....................................................................TGGGTCTTTGCGGGCACGATGA............................................................................................... 22 1 1 1.00 1 0 1 0
.......................................................................................................AACTGGCCTACAAAGTCCCAATA............................................................ 23 2 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTTTA.......................................................... 25 3 1 1.00 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGTTTTA......................................................... 26 3 2 1.00 2 2 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAAT............................................................. 22 1 1 1.00 1 0 0 1
.......................................................................................................AACTGGCCTACAACGTCCCATT............................................................. 22 2 1 1.00 1 1 0 0
.......................................................................................................AAGTGGCCTACAAAGTCCCAGTAA........................................................... 24 3 2 0.50 1 1 0 0
.......................................................................................................AACTGGCCTACACAGTCCCAGTA............................................................ 23 2 2 0.50 1 0 1 0
.......................................................................................................AACTGGCCTACAAAGTCCCGCTAC........................................................... 24 3 2 0.50 1 1 0 0
.......................................................................................................AACTGGCCTAAAAAGTCCCAGTAG........................................................... 24 3 2 0.50 1 0 1 0
.......................................................................................................AATTGGCCTACAACGTCCCAGTA............................................................ 23 3 2 0.50 1 0 1 0
.......................................................................................................AACTGGCCTACAATGTCCCAGTGA........................................................... 24 3 2 0.50 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCACTAG........................................................... 24 3 2 0.50 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCACTA............................................................ 23 2 2 0.50 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGAG............................................................ 23 2 2 0.50 1 0 0 1
.......................................................................................................AAATGGCCTACAACGTCCCAGTAC........................................................... 24 3 2 0.50 1 1 0 0
.......................................................................................................AACTGGCCTCCAAAGTCCCAGTAA........................................................... 24 3 3 0.33 1 1 0 0
.......................................................................................................AACTGGCCTAAAAAGTCCCAGTAA........................................................... 24 3 3 0.33 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGGCCCAGA............................................................. 22 2 3 0.33 1 0 1 0
.......................................................................................................AACTGGCCTCCAAAGTCCCAGTT............................................................ 23 2 3 0.33 1 1 0 0
.......................................................................................................AACTGGCCTACCAACTCCCAGTA............................................................ 23 3 6 0.33 2 2 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAAGA............................................................ 23 3 11 0.27 3 3 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGGAG........................................................... 24 3 4 0.25 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGGAAT.......................................................... 25 3 4 0.25 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGGCCCAGGT............................................................ 23 3 4 0.25 1 0 1 0
.......................................................................................................AACTGGCCTACCAAGTCCCATTA............................................................ 23 3 4 0.25 1 1 0 0
.......................................................................................................AACTGGCATACAAAGTCCCAGTAT........................................................... 24 3 4 0.25 1 1 0 0
.........................................................................................................CTGGCCTACAAAGTCCCAGTTAA.......................................................... 23 3 13 0.23 3 3 0 0
.......................................................................................................AACTGGTCTACAAAGTCCCAGTAA........................................................... 24 3 5 0.20 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCAGATA........................................................... 24 3 5 0.20 1 1 0 0
.......................................................................................................AACTGGCCTACAAAGTCCCATAA............................................................ 23 3 6 0.17 1 1 0 0
.......................................................................................................AACTGGCATACAAAGTCCCAGAA............................................................ 23 3 11 0.09 1 1 0 0

Anti-sense strand reads

AGTACGGGGCCCGTCGGGCAGCCCCCCGCGTGCCGTAGGGCTTGAGGTTCCGCCTGCCCTCGACTCTCGACCCAGAAACGCCCGTTCTACTCCCACAGTCAAGTTGACCGGATGTTTCAGGGTCAGGAGCCGAGGGTCCTGGCCGTAAAAGAGGTGCGAGGAGCGGGGGGGGGGGTTCGGGTGGGA
**********************************************..((((((((((.((((((.(((((.((((.((.((((........)))).)).)))).))))).)))))).))))))))))....****************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:32 PM