ID:

rno-mir-192

 Coordinate:

chr1:221634971-221635080 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-53.6 -52.7 -52.7

Sense Strand Reads

TGGCAGTCCTCAGGCTGGGAAGACAAAGAGTGGTGGGCTGTCAGCAGGCTGTCAAGATGGAGTGCACAGGGCTCTGACCTATGAATTGACAGCCAGTACTCTGATCTCGCCTCTGGCTGCCAGTTCCATAGGTCACAGGTATGTTCGCCTCAATGCCAGCCATAATGACACGAAGGAGCGGGGCAGGAGTGAGGGGACATCAAAGGCAAG
***********************************...(((((...(((((.((...(((.(((.(((...((.((((((((((((((.(((((((................))))))).))))).))))))))).))...))).))).))).)).)))))....))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
.........................................................................CTGACCTATGAATTGACAGCCAT.................................................................................................................. 23 1 1 57.00 57 39 8 10
.........................................................................CTGACCTATGAATTGACAGCCA................................................................................................................... 22 0 1 43.00 43 38 5 0
.........................................................................CTGACCTATGAATTGACAGCCAGT................................................................................................................. 24 0 1 39.00 39 29 10 0
.........................................................................CTGACCTATGAATTGACAGCC.................................................................................................................... 21 0 1 27.00 27 10 12 5
.........................................................................CTGACCTATGAATTGACAGCCAA.................................................................................................................. 23 1 1 18.00 18 18 0 0
.........................................................................CTGACCTATGAATTGACAGCCATT................................................................................................................. 24 1 1 10.00 10 9 1 0
.........................................................................CTGACCTATGAATTGACAGCCAG.................................................................................................................. 23 0 1 10.00 10 10 0 0
.........................................................................CTGACCTATGAATTGACAGCCAAA................................................................................................................. 24 2 1 9.00 9 9 0 0
.........................................................................CTGACCTATGAATTGACAGCCAAT................................................................................................................. 24 1 1 8.00 8 8 0 0
.........................................................................CTGACCTATGAATTGACAGCCAAAA................................................................................................................ 25 2 1 7.00 7 6 1 0
.........................................................................CTGACCTATGAATTGACAGCCAGTT................................................................................................................ 25 1 1 6.00 6 3 3 0
.........................................................................CTGACCTATGAATTGACAGCCAGTTT............................................................................................................... 26 2 1 6.00 6 6 0 0
.........................................................................CTGACCTATGAATTGACAGCCAGA................................................................................................................. 24 1 1 6.00 6 6 0 0
..........................................................................TGACCTATGAATTGACAGCCAGA................................................................................................................. 23 1 1 4.00 4 4 0 0
..........................................................................TGACCTATGAATTGACAGCCAGTAT............................................................................................................... 25 1 1 4.00 4 4 0 0
.........................................................................CTGACCTATGAATTGACAGCCAAG................................................................................................................. 24 2 1 4.00 4 4 0 0
..........................................................................TGACCTATGAATTGACAGCCAGT................................................................................................................. 23 0 1 4.00 4 1 3 0
.........................................................................CTGACCTATGAATTGACAGC..................................................................................................................... 20 0 1 4.00 4 4 0 0
..........................................................................TGACCTATGAATTGACAGCCA................................................................................................................... 21 0 1 3.00 3 3 0 0
..........................................................................TGACCTATGAATTGACAGCCATT................................................................................................................. 23 1 1 2.00 2 2 0 0
.........................................................................CTGACCTATGAATTGACAGCCAATA................................................................................................................ 25 1 1 2.00 2 2 0 0
..........................................................................TGACCTATGAATTGACAGCCAAA................................................................................................................. 23 2 1 2.00 2 2 0 0
....................................................................................................................CTGCCAGTTCCATAGGTCACAGTA...................................................................... 24 2 1 2.00 2 2 0 0
.........................................................................CTGCCCTATGAATTGACAGCCAAT................................................................................................................. 24 2 1 2.00 2 2 0 0
..........................................................................TGACCTATGAATTGACAGCCAG.................................................................................................................. 22 0 1 2.00 2 0 2 0
.............................................................................CCTATGAATTGACAGCCAGT................................................................................................................. 20 0 1 2.00 2 2 0 0
.........................................................................CTGACCTATGAATCGACAGCCAT.................................................................................................................. 23 2 1 2.00 2 2 0 0
..........................................................................TGACCTATGAATTGACAGCCAGAAA............................................................................................................... 25 2 1 2.00 2 2 0 0
.........................................................................CTGACCTATGAATTGACAGCCTT.................................................................................................................. 23 2 1 2.00 2 1 1 0
.........................................................................CTGACCTATGAATTGACAGCCATA................................................................................................................. 24 2 1 2.00 2 2 0 0
.........................................................................CTGACCTATGAATTGACAGCCTTAA................................................................................................................ 25 3 1 2.00 2 2 0 0
..........................................................................TGACCTATGAATTGACAGCCAGTA................................................................................................................ 24 0 1 2.00 2 2 0 0
.........................................................................CTGACCTATGAATTGACAGCCCT.................................................................................................................. 23 2 1 2.00 2 2 0 0
..........................................................................TGACCTATGAATTGACAGCCAGTT................................................................................................................ 24 1 1 2.00 2 2 0 0
..............................................................................CTATGAATTGACAGCC.................................................................................................................... 16 0 5 1.20 6 0 6 0
.........................................................................CTGACCTATGAATTGACAGCCCGT................................................................................................................. 24 1 1 1.00 1 1 0 0
.........................................................................CTGACCTATGAATTGATAGCCAT.................................................................................................................. 23 2 1 1.00 1 1 0 0
..........................................................................TGACCTATGAATTGACAGCCAGTTAA.............................................................................................................. 26 3 1 1.00 1 1 0 0
........................................................................ACTGACCTATGAATTGACAGCAA................................................................................................................... 23 2 1 1.00 1 1 0 0
.........................................................................CTGACCTATGAATTGACAGCCAAAT................................................................................................................ 25 3 1 1.00 1 1 0 0
..........................................................................TGACCTATGAATTGACAGC..................................................................................................................... 19 0 1 1.00 1 1 0 0
........................................................................ACTGACCTATGAATTGACAGCCAT.................................................................................................................. 24 2 1 1.00 1 1 0 0
........................................................................ACTGACCTATGAATTGACAGCCA................................................................................................................... 23 1 1 1.00 1 1 0 0
..........................................................................TGACCTATGAATTGACAGCCAGTTTTT............................................................................................................. 27 3 1 1.00 1 0 1 0
.........................................................................CTGACCTATGAATTGACAGCCTTT................................................................................................................. 24 2 1 1.00 1 1 0 0
.........................................................................CTGACCTATGAATTGACAGCCAGTACT.............................................................................................................. 27 0 1 1.00 1 1 0 0
...........................................................................GACCTATGAATTGACAGCCAG.................................................................................................................. 21 0 1 1.00 1 1 0 0
....................................................................................................................CTGCCAGTTCCATAGGTCACAGA....................................................................... 23 1 1 1.00 1 1 0 0
..............................................................................CTATGAATTGACAGCCAGT................................................................................................................. 19 0 1 1.00 1 0 1 0
.........................................................................CTGACCTATGAATTAACAGCCAGT................................................................................................................. 24 1 1 1.00 1 0 1 0
.........................................................................CTGCCCTATGAATTGACAGCC.................................................................................................................... 21 1 1 1.00 1 0 0 1
.........................................................................CTGACCTATGAATTGACAGCCATTT................................................................................................................ 25 2 1 1.00 1 1 0 0
.........................................................................CTGACCTATGAATTGACAGTCAAAA................................................................................................................ 25 3 1 1.00 1 1 0 0
.........................................................................CTGACCTATGAATTGACAG...................................................................................................................... 19 0 1 1.00 1 1 0 0
.........................................................................CTGACCTATGAATTGACAGCCTGAA................................................................................................................ 25 2 1 1.00 1 1 0 0
.........................................................................CTGACCTATGAATTGACAGCCT................................................................................................................... 22 1 1 1.00 1 0 1 0
.........................................................................CTGACCTATGAATTGACAGCCAATAA............................................................................................................... 26 2 1 1.00 1 1 0 0
..........................................................................TGACCTATGAATTGACAGCCAGTTATT............................................................................................................. 27 3 1 1.00 1 0 1 0
..........................................................................TGACCTATGAATTGACAGCCAGTTT............................................................................................................... 25 2 1 1.00 1 0 1 0
.........................................................................CTGACCTATGCATTGACAGCCAGT................................................................................................................. 24 1 1 1.00 1 1 0 0
..........................................................................TGACCTATGAATTGACCGCCAGA................................................................................................................. 23 2 1 1.00 1 1 0 0
........................................................................ACTGACCTATGAATTGACAGCCAGA................................................................................................................. 25 2 1 1.00 1 1 0 0
.........................................................................CAGACCTATGAATTGACAGCCA................................................................................................................... 22 1 1 1.00 1 1 0 0
..........................................................................TGACCTATGAAATGACAGCCATT................................................................................................................. 23 2 1 1.00 1 1 0 0
..........................................................................TGACCTATGAATTGACAGCCAGAA................................................................................................................ 24 1 1 1.00 1 1 0 0
.........................................................................CTGACCTATGAATTGACAGCCAAGA................................................................................................................ 25 2 1 1.00 1 1 0 0
..........................................................................TGACCTATGAATTGACAGCCAT.................................................................................................................. 22 1 1 1.00 1 1 0 0
.........................................................................CTGACCTATGAATTGACAGCCATGA................................................................................................................ 25 2 1 1.00 1 0 1 0
.........................................................................CTGACCTATGAATTGACAGCCAAC................................................................................................................. 24 2 1 1.00 1 1 0 0
..........................................................................TGACCTATGAATTGACAGCA.................................................................................................................... 20 1 1 1.00 1 1 0 0
.........................................................................CTGACCTATGAATTGACAGCT.................................................................................................................... 21 1 1 1.00 1 1 0 0
.........................................................................CTGACCTATGAATTGACATCCA................................................................................................................... 22 1 1 1.00 1 0 1 0
..............................................................................CTATGAATTGACAGC..................................................................................................................... 15 0 5 0.60 3 0 3 0
.......................................................................AACTGACCTATGAATTGACAGCCATT................................................................................................................. 26 3 2 0.50 1 1 0 0
..............................................................................CTATGAATTGACAGCCA................................................................................................................... 17 0 3 0.33 1 0 1 0
.........................................................................ATGCCCTATGAATTGACAGCCA................................................................................................................... 22 2 6 0.17 1 1 0 0
..............................................................................CTATGAATTGACAGCCAA.................................................................................................................. 18 1 8 0.13 1 1 0 0

Anti-sense strand reads

ACCGTCAGGAGTCCGACCCTTCTGTTTCTCACCACCCGACAGTCGTCCGACAGTTCTACCTCACGTGTCCCGAGACTGGATACTTAACTGTCGGTCATGAGACTAGAGCGGAGACCGACGGTCAAGGTATCCAGTGTCCATACAAGCGGAGTTACGGTCGGTATTACTGTGCTTCCTCGCCCCGTCCTCACTCCCCTGTAGTTTCCGTTC
***********************************...(((((...(((((.((...(((.(((.(((...((.((((((((((((((.(((((((................))))))).))))).))))))))).))...))).))).))).)).)))))....))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:31 PM