ID:

rno-mir-190b

 Coordinate:

chr2:189421137-189421214 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.3 -32.2 -31.6
mature
star
  1. chr2:189421183-189421204 +
  2. chr2:189422058-189422079 +

Sense Strand Reads

CCTTTCTTCACAGTGAGGGGAGGGGCAGATTACACCAAAGTTTACCTGCCTGCTTCTGTGTGATATGTTTGATATTAGGTTGTTAAATTATGAACCAACTAAATGTCAAACATTCTCACAGCAGTGAGGAGACTTGGCACCACCTCCTCTGCTCCTTCAGCTCCTGGGGCTCTGAGAC
*********************************************((.((((((.(((((.((.((((((((((((.(((((((........)).))))).)))))))))))))).))))).))).)))))..********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
............................................................TGATATGTTTGATATTAGGTTGT............................................................................................... 23 0 1 60.00 60 57 3
............................................................TGATATGTTTGATATTAGGTTG................................................................................................ 22 0 1 58.00 58 15 43
............................................................TGATATGTTTGATATTAGGTTGTT.............................................................................................. 24 0 1 26.00 26 26 0
............................................................TGATATGTTTGATATTAGGTTGA............................................................................................... 23 1 1 8.00 8 6 2
............................................................TGATATGTTTGATATTAGGTT................................................................................................. 21 0 1 6.00 6 5 1
............................................................TGATATGTTTGATATTAGGTTGTA.............................................................................................. 24 1 1 4.00 4 4 0
............................................................TGATATGTTTGATATTAGGT.................................................................................................. 20 0 1 3.00 3 3 0
............................................................TGATATGTTTGATATTAGGTTA................................................................................................ 22 1 1 3.00 3 3 0
.............................................................GATATGTTTGATATTAGGTTG................................................................................................ 21 0 1 3.00 3 0 3
............................................................TGATATGTTTGATATTCGGTTGT............................................................................................... 23 1 1 2.00 2 2 0
............................................................TGATATGTTTTATATTAGGTTG................................................................................................ 22 1 1 2.00 2 0 2
............................................................TGATATGTTTGATATTAGGTTGTTT............................................................................................. 25 1 1 2.00 2 2 0
............................................................TGATATGTTTGATATTAGGTTGAAA............................................................................................. 25 2 1 1.00 1 0 1
............................................................TGATATGTTTGATATTCGGTTG................................................................................................ 22 1 1 1.00 1 0 1
............................................................TGATATGTTTGATATTAGGTTGAAAA............................................................................................ 26 2 1 1.00 1 0 1
............................................................TGATATGTTTGATCTTAGGTTGT............................................................................................... 23 1 1 1.00 1 1 0
............................................................TGATATGTTTGATATTAGGTTGTTA............................................................................................. 25 0 1 1.00 1 1 0
............................................................TGTTATGTTTGATATTAGGTTGT............................................................................................... 23 1 1 1.00 1 1 0
............................................................TGATATGTTTGCTATTAGGTTGT............................................................................................... 23 1 1 1.00 1 1 0
................................................................................................AACTAAATGTCAAACATTCTCA............................................................ 22 0 2 0.50 1 1 0
............................................................TGTTATGTTTGATCTTAGGTTGT............................................................................................... 23 2 2 0.50 1 1 0

Anti-sense strand reads

GGAAAGAAGTGTCACTCCCCTCCCCGTCTAATGTGGTTTCAAATGGACGGACGAAGACACACTATACAAACTATAATCCAACAATTTAATACTTGGTTGATTTACAGTTTGTAAGAGTGTCGTCACTCCTCTGAACCGTGGTGGAGGAGACGAGGAAGTCGAGGACCCCGAGACTCTG
*********************************************((.((((((.(((((.((.((((((((((((.(((((((........)).))))).)))))))))))))).))))).))).)))))..********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:43 PM