ID:

rno-mir-1843b

 Coordinate:

chr13:77065446-77065507 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-20.8 -20.7 -20.5
mature
  1. chr13:77065449-77065470 +
  2. chr6:103567623-103567644 -
star

Sense Strand Reads

AGACAAATGAGGAACTATCTTTTGTCTGCAGAAGGCAGCGATCCTACATAAACATGGAGGTCTCTGTCTGACTTAGGATAGCTGGCTAAGTCTGATCGTTCCCCTCCATACAGTTTTTTAAATTTCCACTGCTCTCTTTATCATTTGTGCAATATCTCTGCT
***********************************..............(((((((((((.....(((.(((((((.........))))))).)))......)))))))...))))...........*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
.....................................................ATGGAGGTCTCTGTCTGACTTAA...................................................................................... 23 1 2 6.50 13 13 0 0
.....................................................ATGGAGGTCTCTGTCTGACTTA....................................................................................... 22 0 2 5.00 10 10 0 0
...................................................ACATGGAGGTCTCTGTCTGAC.......................................................................................... 21 0 1 3.00 3 3 0 0
.....................................................ATGGAGGTCTCTGTCTGACTTAT...................................................................................... 23 1 2 2.50 5 5 0 0
...................................................ACATGGAGGTCTCTGTCTGACTTAT...................................................................................... 25 1 1 2.00 2 2 0 0
....................................................CATGGAGGTCTCTGTCTGA........................................................................................... 19 0 1 2.00 2 1 1 0
...................................................ACATGGAGGTCTCTGTCTGACTTAA...................................................................................... 25 1 1 2.00 2 2 0 0
....................................................CATGGAGGTCTCTGTCTGACTTAT...................................................................................... 24 1 1 2.00 2 2 0 0
.....................................................ATGGAGGTCTCTGTCTGACTTTT...................................................................................... 23 2 2 2.00 4 3 1 0
....................................................CATGGAGGTCTCTGTCTGACTTTT...................................................................................... 24 2 1 2.00 2 2 0 0
...................................................ACATGGAGGTCTCTGTCTGACTT........................................................................................ 23 0 1 2.00 2 2 0 0
.....................................................ATGGAGGTCTCTGTCTGACTTT....................................................................................... 22 1 2 1.50 3 3 0 0
.....................................................ATGGAGGTCTCTGTCTGACTTTA...................................................................................... 23 2 2 1.50 3 3 0 0
.....................................................ATGGAGGTCTCTGTCTGACTT........................................................................................ 21 0 2 1.50 3 2 1 0
.........................................................................................GACTGATCGTTCCCCTCCATA.................................................... 21 1 1 1.00 1 1 0 0
..........................................................................................TCTGATCGTTCCCCTCCATACAG................................................. 23 0 1 1.00 1 1 0 0
.....................................................ATGGAGGTCTCAGTCTGACTTA....................................................................................... 22 1 2 1.00 2 2 0 0
........................................................................................TGTCTGATAGTTCCCCTCCATAC................................................... 23 2 1 1.00 1 1 0 0
........................................................................................AGTCTGATCGTTCCCCTCCATATA.................................................. 24 1 1 1.00 1 1 0 0
...................................................ACATGGAGGTCTCTGTCTGACTAT....................................................................................... 24 2 1 1.00 1 1 0 0
..................................................AACATGGAGGTCTCTGTCTGACTT........................................................................................ 24 0 1 1.00 1 1 0 0
..................................................AACATGGAGGTCTTTGTCTGACTT........................................................................................ 24 1 1 1.00 1 1 0 0
.....................................................ATGGAGGTCTCTGTCTGACTTCG...................................................................................... 23 1 2 1.00 2 1 0 1
....................................................AATGGAGGTCTCTGTCTGACTTAG...................................................................................... 24 1 2 0.50 1 1 0 0
....................................................CATGGAGGTCTCTGTCTGACTTTAAA.................................................................................... 26 3 2 0.50 1 1 0 0
.....................................................ATGGAGGTCTCTGTCTGA........................................................................................... 18 0 2 0.50 1 1 0 0
.....................................................ATGGAGGTCTCTGACTGACTTAA...................................................................................... 23 2 2 0.50 1 1 0 0
.....................................................ATGGAGGTCTCTGTCTGACTTGA...................................................................................... 23 2 2 0.50 1 1 0 0
.....................................................ATGGAGGTCTCTGTCTGACTTATTTT................................................................................... 26 3 2 0.50 1 1 0 0
.....................................................GTGGAGGTCTCTGTCTGACTT........................................................................................ 21 1 2 0.50 1 0 1 0
.....................................................ATGTAGGTCTCTGTCTGACTTA....................................................................................... 22 1 2 0.50 1 1 0 0
.....................................................ATGGAGGTATCTGTCTGACTTC....................................................................................... 22 2 2 0.50 1 1 0 0
......................................................TGGAGGTCTCTGTCTGACTTAA...................................................................................... 22 1 2 0.50 1 1 0 0
......................................................TGGAGGTCTCTGTCTGAC.......................................................................................... 18 0 2 0.50 1 0 1 0
.....................................................ATGGAGGTCTCTGTCTGACTTTAT..................................................................................... 24 3 3 0.33 1 1 0 0
.....................................................ATGGACGTCTCTGTCTGACTTAA...................................................................................... 23 2 3 0.33 1 1 0 0
...................................................................................................................TTTTAACTTTCGACTGCTCTC.......................... 21 2 4 0.25 1 0 1 0

Anti-sense strand reads

TCTGTTTACTCCTTGATAGAAAACAGACGTCTTCCGTCGCTAGGATGTATTTGTACCTCCAGAGACAGACTGAATCCTATCGACCGATTCAGACTAGCAAGGGGAGGTATGTCAAAAAATTTAAAGGTGACGAGAGAAATAGTAAACACGTTATAGAGACGA
***********************************..............(((((((((((.....(((.(((((((.........))))))).)))......)))))))...))))...........*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:35 PM