ID:

rno-mir-1839

Coordinate:

chr1:143360224-143360287 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-21.2 -20.5 -20.5

Sense Strand Reads

GACAATAGAGTCCTTGAAGTCAAGCTGACTCTGCCTTTAGCCTCCTACATGAAAAGGTAGATAGAACAGGTCTTGTTTGCAAAATAAATTCAAGACCTACTTATCTACCAACAGCTATTACCTACTTCCCACAGCCTTCCTACAGGAAGTGGGTGGAGTAGACT
**************************************.................(((((((((...((((((((...............))))))))..)))))))))...................************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes
GSM1528817
Adult_testes
GSM1528818
Adult_testes_Mili_IP
.....................................................AAGGTAGATAGAACAGGTCTTGA........................................................................................ 23 1 1 3211.00 3211 3156 21 34
.....................................................AAGGTAGATAGAACAGGTCTTGT........................................................................................ 23 0 1 1819.00 1819 1794 24 1
.....................................................AAGGTAGATAGAACAGGTCTTG......................................................................................... 22 0 1 1767.00 1767 1726 24 17
......................................................AGGTAGATAGAACAGGTCTTGTT....................................................................................... 23 0 1 431.00 431 429 2 0
......................................................AGGTAGATAGAACAGGTCTTGA........................................................................................ 22 1 1 323.00 323 322 1 0
.....................................................AAGGTAGATAGAACAGGTCTTGAA....................................................................................... 24 2 1 312.00 312 311 1 0
......................................................AGGTAGATAGAACAGGTCTTGT........................................................................................ 22 0 1 263.00 263 255 8 0
......................................................AGGTAGATAGAACAGGTCTTG......................................................................................... 21 0 1 129.00 129 126 3 0
.....................................................AAGGTAGATAGAACAGGTCTTGAT....................................................................................... 24 1 1 126.00 126 117 0 9
......................................................AGGTAGATAGAACAGGTCTTGTTA...................................................................................... 24 1 1 111.00 111 110 1 0
......................................................AGGTAGATAGAACAGGTCTTGTTT...................................................................................... 24 0 1 94.00 94 92 2 0
......................................................AGGTAGATAGAACAGGTCTTGAA....................................................................................... 23 2 1 86.00 86 86 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGTA....................................................................................... 24 1 1 84.00 84 84 0 0
.....................................................AAGGTAGATAGAACAGGTCTTA......................................................................................... 22 1 1 76.00 76 76 0 0
.....................................................AAGGTAGATAGAACAGGTCTTAA........................................................................................ 23 2 1 73.00 73 73 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGTT....................................................................................... 24 0 1 69.00 69 69 0 0
.....................................................AAGGTAGATAGAACAGGTCTT.......................................................................................... 21 0 1 66.00 66 54 12 0
....................................................AAAGGTAGATAGAACAGGTCTTGA........................................................................................ 24 1 1 58.00 58 57 1 0
......................................................AGGTAGATAGAACAGGTCTTGTAA...................................................................................... 24 2 1 53.00 53 53 0 0
....................................................AAAGGTAGATAGAACAGGTCTTG......................................................................................... 23 0 1 51.00 51 51 0 0
......................................................AGGTAGATAGAACAGGTCTTGTA....................................................................................... 23 1 1 50.00 50 50 0 0
............................................................................................AGACCTACTTATCTACCAACA................................................... 21 0 1 50.00 50 50 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGTAA...................................................................................... 25 2 1 47.00 47 47 0 0
.....................................................AAGGTAGATAGAACAGGTCTTAT........................................................................................ 23 1 1 36.00 36 36 0 0
.......................................................GGTAGATAGAACAGGTCTTGA........................................................................................ 21 1 1 30.00 30 30 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGAG....................................................................................... 24 2 1 29.00 29 29 0 0
.....................................................AAGGAAGATAGAACAGGTCTTG......................................................................................... 22 1 1 29.00 29 28 0 1
.....................................................AAGGGAGATAGAACAGGTCTTGA........................................................................................ 23 2 1 28.00 28 25 1 2
.....................................................AAGGTAGATAGAACAGGTCTTT......................................................................................... 22 1 1 28.00 28 25 3 0
.....................................................AAGGTAGATAGAACAGGTCTTGTAT...................................................................................... 25 1 1 27.00 27 27 0 0
......................................................AGGTAGATAGAACAGGTCTTGTAT...................................................................................... 24 1 1 25.00 25 25 0 0
.....................................................AAGGTAGATAGAACAGGTCT........................................................................................... 20 0 1 25.00 25 12 13 0
.....................................................AAGGTAGATAGAACAGGTCTTGAAA...................................................................................... 25 3 2 24.00 48 48 0 0
....................................................AAAGGTAGATAGAACAGGTCTTGT........................................................................................ 24 0 1 22.00 22 21 1 0
.....................................................AAGGTAGATAGAAAAGGTCTTG......................................................................................... 22 1 1 21.00 21 21 0 0
......................................................AGGTAGATAGAACAGGTCTTGAT....................................................................................... 23 1 1 20.00 20 20 0 0
.....................................................AAGGTAGATAGAAAAGGTCTTGT........................................................................................ 23 1 1 19.00 19 19 0 0
.....................................................AAGGTAGATAGCACAGGTCTTGA........................................................................................ 23 2 1 19.00 19 18 0 1
.....................................................AAGGTAGATAGAACCGGTCTTG......................................................................................... 22 1 1 17.00 17 17 0 0
.....................................................AAGGTAGATAGCACAGGTCTTGT........................................................................................ 23 1 1 16.00 16 16 0 0
.....................................................AAGGTAGATAGAACCGGTCTTGT........................................................................................ 23 1 1 15.00 15 15 0 0
.....................................................AAGGTAGATAGCACAGGTCTTG......................................................................................... 22 1 1 15.00 15 15 0 0
..........................................................................................CAAGACCTACTTATCTACCAAC.................................................... 22 0 1 15.00 15 15 0 0
.....................................................AAGGTAGATAGAAAAGGTCTTGA........................................................................................ 23 2 2 14.50 29 28 0 1
.....................................................AAGGTAGATAGAACCGGTCTTGA........................................................................................ 23 2 2 13.50 27 26 0 1
............................................................................................AGACCTACTTATCTACCAACT................................................... 21 1 1 13.00 13 13 0 0
.......................................................GGTAGATAGAACAGGTCTTG......................................................................................... 20 0 1 13.00 13 13 0 0
.....................................................AAGGAAGATAGAACAGGTCTTGA........................................................................................ 23 2 2 12.50 25 25 0 0
.....................................................AAGGCAGATAGAACAGGTCTTGA........................................................................................ 23 2 1 12.00 12 12 0 0
.....................................................AAGGGAGATAGAACAGGTCTTG......................................................................................... 22 1 1 12.00 12 12 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGAGA...................................................................................... 25 3 1 12.00 12 12 0 0
.......................................................GGTAGATAGAACAGGTCTTGTT....................................................................................... 22 0 1 12.00 12 12 0 0
.....................................................AAGGTAGATAGAACAGGTCTTAAA....................................................................................... 24 3 2 11.00 22 22 0 0
..........................................................................................CAAGACCTACTTATCTACCAA..................................................... 21 0 1 11.00 11 9 2 0
......................................................AGGTAGATAGAACAGGTCTTGTTAA..................................................................................... 25 2 1 10.00 10 10 0 0
.....................................................AAGGTAGATAGAACAGGTCTTTA........................................................................................ 23 2 1 10.00 10 10 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGG........................................................................................ 23 1 1 10.00 10 10 0 0
.....................................................AAGGTAGATAGAACAGGTCTTCT........................................................................................ 23 1 1 10.00 10 10 0 0
............................................................................................AGACCTACTTATCTACCAACAGCT................................................ 24 0 1 10.00 10 10 0 0
.....................................................AAGGTAGATAGAACAGGTCTTAG........................................................................................ 23 2 1 10.00 10 10 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGTTA...................................................................................... 25 1 1 9.00 9 9 0 0
.....................................................AAGGTAGATAGAACAGGTCTTAGA....................................................................................... 24 3 1 9.00 9 9 0 0
.....................................................AAGGAAGATAGAACAGGTCTTGT........................................................................................ 23 1 1 9.00 9 9 0 0
......................................................AGGTAGATAGAACAGGTCTTGTAG...................................................................................... 24 2 1 9.00 9 9 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGC........................................................................................ 23 1 1 9.00 9 8 1 0
.....................................................AAGGTAGATAGAACAGGTCTTCA........................................................................................ 23 2 1 8.00 8 8 0 0
.....................................................AAGGCAGATAGAACAGGTCTTGT........................................................................................ 23 1 1 8.00 8 7 1 0
......................................................AGGTAGATAGAACAGGTCTTGAAT...................................................................................... 24 2 1 8.00 8 8 0 0
.....................................................AAGGTAGATAGAACAGGTCTTC......................................................................................... 22 1 1 8.00 8 7 0 1
.....................................................AAGGTAGATAGAACAGGTC............................................................................................ 19 0 1 7.00 7 5 2 0
.....................................................CAGGTAGATAGAACAGGTCTTGA........................................................................................ 23 2 1 7.00 7 7 0 0
.....................................................AAGGCAGATAGAACAGGTCTTG......................................................................................... 22 1 1 7.00 7 7 0 0
.....................................................AAGGTAGATAGAACAGGCCTTGA........................................................................................ 23 2 1 7.00 7 7 0 0
......................................................AGGTAGATAGAACAGGTCTT.......................................................................................... 20 0 1 7.00 7 7 0 0
............................................................................................AGACCTACTTATCTACCAACAGT................................................. 23 1 1 7.00 7 7 0 0
........................................................GTAGATAGAACAGGTCTTGA........................................................................................ 20 1 1 7.00 7 7 0 0
........................................................GTAGATAGAACAGGTCTTGTT....................................................................................... 21 0 1 7.00 7 7 0 0
.....................................................AAGGTAGATAGAACAGGCCTTGT........................................................................................ 23 1 1 7.00 7 7 0 0
......................................................AGGTAGATAGAACCGGTCTTGTT....................................................................................... 23 1 1 6.00 6 6 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGAAT...................................................................................... 25 2 1 6.00 6 6 0 0
......................................................AGGTAGATAGAACAGGTCTTGC........................................................................................ 22 1 1 6.00 6 6 0 0
....................................................AAAGGTAGATAGAACAGGTCTTAA........................................................................................ 24 2 1 5.00 5 5 0 0
....................................................AAAGGTAGATAGAACAGGTCTTGAA....................................................................................... 25 2 1 5.00 5 5 0 0
............................................................................................AGACCTACTTATCTACCAACAG.................................................. 22 0 1 5.00 5 5 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGGT....................................................................................... 24 1 1 5.00 5 5 0 0
.....................................................ACGGTAGATAGAACAGGTCTTGA........................................................................................ 23 2 1 5.00 5 5 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGTAG...................................................................................... 25 2 1 5.00 5 5 0 0
.....................................................AAGGTAGATAGGACAGGTCTTGA........................................................................................ 23 2 1 5.00 5 5 0 0
.....................................................AAGGTAGATAGAACAGGTATTGT........................................................................................ 23 1 1 5.00 5 5 0 0
......................................................AGGTAGATAGACCAGGTCTTGT........................................................................................ 22 1 1 5.00 5 5 0 0
......................................................AGGTAGATAGAACAGGTCTTGTTG...................................................................................... 24 1 1 5.00 5 5 0 0
.....................................................AAGGTAGATAGAACAGGGCTTGA........................................................................................ 23 2 1 5.00 5 4 0 1
.....................................................AAGGTAGATAGAACAGGGCTTGT........................................................................................ 23 1 1 5.00 5 5 0 0
.......................................................GGTAGATAGAACAGGTCTTGTTA...................................................................................... 23 1 1 5.00 5 5 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGGA....................................................................................... 24 2 1 5.00 5 5 0 0
.....................................................AAGGTAGATAGAACAGGT............................................................................................. 18 0 1 5.00 5 0 5 0
.....................................................AAGGTAGATAGAACAGGTATTGA........................................................................................ 23 2 2 4.50 9 8 0 1
......................................................AGGTAGATAGAACAGGTCTTGAAA...................................................................................... 24 3 4 4.25 17 17 0 0
...................................................AAAAGGTAGATAGAACAGGTCTTG......................................................................................... 24 0 1 4.00 4 4 0 0
.....................................................AAGGTAGATACAACAGGTCTTGT........................................................................................ 23 1 1 4.00 4 4 0 0
.....................................................AAGGGAGATAGAACAGGTCTTGT........................................................................................ 23 1 1 4.00 4 4 0 0
......................................................AGGTAGATAGAACCGGTCTTGT........................................................................................ 22 1 1 4.00 4 4 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGTTT...................................................................................... 25 0 1 4.00 4 4 0 0
...........................................................................................AAGACCTACTTATCTACCAACA................................................... 22 0 1 4.00 4 4 0 0
.....................................................AAGGTAGATAGAATAGGTCTTGT........................................................................................ 23 1 1 4.00 4 4 0 0
.....................................................AAGGTAGATAGAACAGGCCTTG......................................................................................... 22 1 1 4.00 4 4 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGATT...................................................................................... 25 1 1 4.00 4 4 0 0
.....................................................AAGGTAGATAGAACAGGGCTTG......................................................................................... 22 1 1 4.00 4 4 0 0
......................................................AGGTAGATAGAACAGGTCTTGGA....................................................................................... 23 2 1 4.00 4 4 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGATA...................................................................................... 25 2 1 4.00 4 4 0 0
.........................................................................................TCAAGACCTACTTATCTACCAACA................................................... 24 0 1 4.00 4 4 0 0
......................................................AGGTAGATAGAACAGGTCTTGTTAT..................................................................................... 25 2 1 4.00 4 4 0 0
..........................................................................................CAAGACCTACTTATCTACCAAT.................................................... 22 1 1 4.00 4 4 0 0
.........................................................................................TCAAGACCTACTTATCTACCA...................................................... 21 0 1 4.00 4 4 0 0
.....................................................AAGGTAGATAGAACAGCTCTTG......................................................................................... 22 1 1 4.00 4 3 1 0
.....................................................AAGGTAGCTAGAACAGGTCTTGA........................................................................................ 23 2 1 3.00 3 3 0 0
......................................................CGGTAGATCGAACAGGTCTTGTT....................................................................................... 23 2 1 3.00 3 3 0 0
.....................................................AAGGTAGATAGGACAGGTCTTGT........................................................................................ 23 1 1 3.00 3 3 0 0
....................................................AAAGGTAGATAGAACAGGTCTTGAT....................................................................................... 25 1 1 3.00 3 3 0 0
.....................................................AAGGTAGATAGAACAGGACTTG......................................................................................... 22 1 1 3.00 3 3 0 0
.....................................................AAGGTAGATACAACAGGTCTTG......................................................................................... 22 1 1 3.00 3 3 0 0
.......................................................GGTAGATAGAACAGGTCTTGTTT...................................................................................... 23 0 1 3.00 3 3 0 0
......................................................AGGTAGATAGAACAGGTCTTGTTTT..................................................................................... 25 1 1 3.00 3 3 0 0
.....................................................AAGGTAGATAAAACAGGTCTTGT........................................................................................ 23 1 1 3.00 3 3 0 0
.....................................................AAGGTAGATAGAACAGATCTTGT........................................................................................ 23 1 1 3.00 3 3 0 0
......................................................AGGTAGATAGAACAGGTCTTGTGA...................................................................................... 24 2 1 3.00 3 3 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGTCA...................................................................................... 25 2 1 3.00 3 3 0 0
.........................................................TAGATAGAACAGGTCTTGT........................................................................................ 19 0 1 3.00 3 3 0 0
.....................................................AAGGTAGATAGAACAGCTCTTGT........................................................................................ 23 1 1 3.00 3 3 0 0
......................................................AGGTAGATAGAACAGGTCTTT......................................................................................... 21 1 1 3.00 3 3 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGTAAA..................................................................................... 26 3 1 3.00 3 3 0 0
.....................................................AAGGTAGATAGAACAGGTCTTTAT....................................................................................... 24 2 1 3.00 3 3 0 0
.....................................................AAGGTAGACAGAACAGGTCTTGT........................................................................................ 23 1 1 3.00 3 3 0 0
......................................................AGGAAGATAGAACAGGTCTTG......................................................................................... 21 1 2 3.00 6 6 0 0
.....................................................CAGGTAGATAGAACAGGTCTTGT........................................................................................ 23 1 1 3.00 3 3 0 0
.......................................................GGTAGATAGAACAGGTCTTGT........................................................................................ 21 0 1 3.00 3 3 0 0
......................................................AGGTAGATAGCACAGGTCTTGTT....................................................................................... 23 1 1 3.00 3 3 0 0
......................................................AGGTAGATAGAACCGGTCTTG......................................................................................... 21 1 1 3.00 3 3 0 0
.......................................................GGTAGATAGAACAGGTCTTGTAT...................................................................................... 23 1 1 3.00 3 3 0 0
.....................................................AAGGTAGATAGAACAGGTCTAGA........................................................................................ 23 2 1 3.00 3 3 0 0
.....................................................AAGGTAGATAGAACAGGTCCTGA........................................................................................ 23 2 1 3.00 3 3 0 0
.....................................................AAGGTAGATAAAACAGGTCTTGA........................................................................................ 23 2 1 3.00 3 3 0 0
......................................................AGGTAGATAGAACAGGTCTTA......................................................................................... 21 1 1 3.00 3 3 0 0
......................................................AGGTAGATAGAACAGGTCTTGAG....................................................................................... 23 2 2 2.50 5 5 0 0
......................................................AGGTAGATAGAACAGGTCTTGCT....................................................................................... 23 1 1 2.00 2 2 0 0
.....................................................ACGGTAGATAGAACAGGTCTTGT........................................................................................ 23 1 1 2.00 2 2 0 0
....................................................AAAGGTAGATAGAACAGGTCTTGTA....................................................................................... 25 1 1 2.00 2 2 0 0
......................................................AGGTAGATAGAACCGGTCTTGA........................................................................................ 22 2 2 2.00 4 4 0 0
.....................................................AAGGTAGATAGAACAGGTCTTAAT....................................................................................... 24 2 1 2.00 2 2 0 0
......................................................AGGTAGATAGGACAGGTCTTGA........................................................................................ 22 2 1 2.00 2 1 1 0
...............................................................................................CCTACTTATCTACCAAC.................................................... 17 0 1 2.00 2 2 0 0
.....................................................AAGGTAGATAGAAGAGGTCTTGA........................................................................................ 23 2 1 2.00 2 2 0 0
.....................................................AAGTTAGATAGAACAGGTCTTGT........................................................................................ 23 1 1 2.00 2 2 0 0
......................................................AGGTAGATAGAACAGGTCTTGCA....................................................................................... 23 2 1 2.00 2 2 0 0
.....................................................AAGGTAGATAGAATAGGTCTTG......................................................................................... 22 1 2 2.00 4 4 0 0
......................................................AGGGAGATAGAACAGGTCTTGT........................................................................................ 22 1 1 2.00 2 2 0 0
......................................................AGGAAGATAGAACAGGTCTTGTAA...................................................................................... 24 3 1 2.00 2 2 0 0
......................................................AGGTAGATAGAACAGGCCTTGTT....................................................................................... 23 1 1 2.00 2 2 0 0
......................................................AGGTAGATAGACCAGGTCTTGTTA...................................................................................... 24 2 1 2.00 2 2 0 0
......................................................AGGAAGATAGAACAGGTCTTGTT....................................................................................... 23 1 1 2.00 2 2 0 0
...................................................GAAAGGTAGATAGAACAGGTCTTGA........................................................................................ 25 2 1 2.00 2 2 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGAC....................................................................................... 24 2 1 2.00 2 2 0 0
.....................................................AAGGTAGATAGATCAGGTCTTGT........................................................................................ 23 1 1 2.00 2 2 0 0
.....................................................AAGGTAGATAGCACGGGTCTTGT........................................................................................ 23 2 2 2.00 4 4 0 0
.....................................................AAGGTAGATAGTACAGGTCTTG......................................................................................... 22 1 1 2.00 2 2 0 0
..........................................................................................CAAGACCTACTTATCTACCAATA................................................... 23 1 1 2.00 2 2 0 0
......................................................AGGTAGATAGACCAAGTCTTGTT....................................................................................... 23 2 1 2.00 2 2 0 0
......................................................AGGTAGATAGCACAGGTCTTGT........................................................................................ 22 1 1 2.00 2 2 0 0
.....................................................AAGGTAGATAAAACAGGTCTTG......................................................................................... 22 1 1 2.00 2 2 0 0
.....................................................AAGGTAGATCGAACAGGTCTTGA........................................................................................ 23 2 1 2.00 2 2 0 0
.....................................................AAGGTAGAGAGAACAGGTCTTGT........................................................................................ 23 1 1 2.00 2 2 0 0
.........................................................................................TCAAGACCTACTTATCTACCAACT................................................... 24 1 1 2.00 2 2 0 0
.....................................................AACGTAGATAGAACAGGTCTTGA........................................................................................ 23 2 1 2.00 2 2 0 0
........................................................GTAGATAGAACAGGTCTTG......................................................................................... 19 0 1 2.00 2 2 0 0
.....................................................AAGGTAGATAGAACAGGTCTTTT........................................................................................ 23 1 1 2.00 2 2 0 0
.....................................................AAGGTAGATAGAACAGCTCTTGA........................................................................................ 23 2 1 2.00 2 2 0 0
.....................................................AAGGTAGATACAACAGGTCTTGA........................................................................................ 23 2 1 2.00 2 2 0 0
......................................................AGGTAGATGGAACAGGTCTTGTT....................................................................................... 23 1 1 2.00 2 2 0 0
.....................................................AAGGTAGATAGAACAGGTTTTGT........................................................................................ 23 1 1 2.00 2 2 0 0
.....................................................AAGGTAGACAGAACAGGTCTTGA........................................................................................ 23 2 1 2.00 2 2 0 0
.....................................................AAGGTAGATAGCACAGGTCTTGC........................................................................................ 23 2 1 2.00 2 2 0 0
.....................................................AAGATAGATAGAACCGGTCTTG......................................................................................... 22 2 1 2.00 2 2 0 0
......................................................AGGTAGATAGACCAGGTCTTGTT....................................................................................... 23 1 1 2.00 2 2 0 0
......................................................AGGTAGATAGAACAGGTCTTTTT....................................................................................... 23 1 1 2.00 2 2 0 0
.....................................................AAGGTAGATAGAACAGGTCTCGA........................................................................................ 23 2 1 2.00 2 2 0 0
......................................................AGGTAGATAGAACCGGTCTTGTTT...................................................................................... 24 1 1 2.00 2 2 0 0
...................................................AAAAGGTAGATAGAACAGGTCTTGT........................................................................................ 25 0 1 2.00 2 2 0 0
.....................................................AAGATAGATAGAACAGGTCTTGA........................................................................................ 23 2 2 2.00 4 4 0 0
....................................................AAAGGTAGATAGACCAGGTCTTGA........................................................................................ 24 2 1 2.00 2 2 0 0
.....................................................AAGGTAGATAGAACAGGTATTG......................................................................................... 22 1 1 2.00 2 2 0 0
......................................................AGGTAGATAGAACAGGTCTTGTTC...................................................................................... 24 1 1 2.00 2 2 0 0
..........................................................AGATAGAACAGGTCTTGT........................................................................................ 18 0 1 2.00 2 2 0 0
.....................................................AAGGTAGATAGTACAGGTCTTGT........................................................................................ 23 1 1 2.00 2 2 0 0
......................................................AGGTAGATAGAACAGGTCTTGGT....................................................................................... 23 1 1 2.00 2 2 0 0
...........................................................................................AAGACCTACTTATCTACCAAC.................................................... 21 0 1 2.00 2 2 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGTC....................................................................................... 24 1 1 2.00 2 2 0 0
.....................................................AAGGTAGATAGGACAGGTCTTG......................................................................................... 22 1 1 2.00 2 2 0 0
.......................................................GGTAGATAGAACAGGTCTTGTTAA..................................................................................... 24 2 1 2.00 2 2 0 0
...........................................................................................AAGACCTACTTATCTACCAACAGC................................................. 24 0 1 2.00 2 2 0 0
.....................................................ACGGTAGATAGAACAGGTCTTG......................................................................................... 22 1 1 2.00 2 2 0 0
.....................................................AAGGTAAATAGAACAGGTCTTGT........................................................................................ 23 1 1 2.00 2 2 0 0
..........................................................................................CAAGACCTACTTATCTACCAACT................................................... 23 1 1 2.00 2 2 0 0
......................................................AGGTAGATAGAACTGGTCTTGTT....................................................................................... 23 1 1 2.00 2 2 0 0
.....................................................GAGGTAGATAGAACAGGTCTTGT........................................................................................ 23 1 1 2.00 2 2 0 0
......................................................AGGTAGATAGACCAGGTCTTGA........................................................................................ 22 2 1 2.00 2 2 0 0
.............................................................................................GACCTACTTATCTACCAACAGT................................................. 22 1 1 2.00 2 2 0 0
.....................................................AAGGTACATAGAACAGGTCTTGA........................................................................................ 23 2 1 2.00 2 2 0 0
.....................................................AATGTAGATAGAACAGGTCTTGT........................................................................................ 23 1 1 2.00 2 2 0 0
.....................................................AAGGAAGATAGAACAGGTCTTGAT....................................................................................... 24 2 1 2.00 2 2 0 0
......................................................AGGTAGATAGAACGGGTCTTGTT....................................................................................... 23 1 1 2.00 2 2 0 0
.....................................................GAGGTAGATAGAACAGGTCTTGA........................................................................................ 23 2 2 1.50 3 3 0 0
......................................................AGGTAGATAGAACAGGCCTTGA........................................................................................ 22 2 2 1.50 3 3 0 0
......................................................AGGTAGATAGAACAGGTCTTGTAAA..................................................................................... 25 3 2 1.50 3 3 0 0
.....................................................AAAGTAGATAGAACAGGTCTTGA........................................................................................ 23 2 2 1.50 3 3 0 0
......................................................AGGTAGATAGAACAGGTCTTGAGA...................................................................................... 24 3 3 1.33 4 4 0 0
.....................................................AAGGTAGATAGAATAGGTCTTGA........................................................................................ 23 2 3 1.33 4 4 0 0
............................................................................................AAACCTACTTATCTACCAACA................................................... 21 1 1 1.00 1 0 1 0
................................................................................................CTACTTATCTACCAACA................................................... 17 0 1 1.00 1 1 0 0
.....................................................CAGGTAGATAGAACAGGTCTTG......................................................................................... 22 1 1 1.00 1 1 0 0
.....................................................AAGTTAGATAGAACAGGTCTTGA........................................................................................ 23 2 1 1.00 1 1 0 0
...................................................AAAAGGTAGATAGAACAGGTCTTGAA....................................................................................... 26 2 1 1.00 1 1 0 0
......................................................AGGTAGATAGAACAGGTCCTGA........................................................................................ 22 2 1 1.00 1 1 0 0
.....................................................AAAGTAGATAGAACAGGTCTTGAT....................................................................................... 24 2 2 1.00 2 1 0 1
.....................................................AAGGTAGATAGAACAGGTCTTGATC...................................................................................... 25 2 1 1.00 1 1 0 0
......................................................AGGTAGATAGAACAGGTCTTAA........................................................................................ 22 2 2 1.00 2 2 0 0
......................................................AGGTAGATCGAACAGGTCTTGTTT...................................................................................... 24 1 1 1.00 1 1 0 0
............................................................................................AGACCTACTTATCTACCACCAGCT................................................ 24 1 1 1.00 1 1 0 0
......................................................AGGTAGATAGAACAGGTCT........................................................................................... 19 0 1 1.00 1 1 0 0
......................................................AGGTAGATAGAACAGGTCTTGTGT...................................................................................... 24 1 1 1.00 1 1 0 0
......................................................AGGTAGATAGAACAGGTCTTGATA...................................................................................... 24 2 1 1.00 1 1 0 0
.....................................................AAGTTAGATAGAACAGGTCTTAT........................................................................................ 23 2 1 1.00 1 1 0 0
.....................................................AAGGTAGATGGAACAGGTCTTGA........................................................................................ 23 2 1 1.00 1 1 0 0
.....................................................AAGGTAGCTAGAACAGGTCTTG......................................................................................... 22 1 1 1.00 1 1 0 0
.....................................................AAGGTAGATACAACAGGTCTTGAA....................................................................................... 24 3 2 1.00 2 2 0 0
...................................................TGAAGGTAGATAGAACAGGTCT........................................................................................... 22 2 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAACAGGACTTGT........................................................................................ 23 1 1 1.00 1 1 0 0
......................................................AGGTAGATAGCACAGGTCTTGTTA...................................................................................... 24 2 1 1.00 1 1 0 0
......................................................AGGTAGATAGATCAGGTCTTGT........................................................................................ 22 1 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAACAGGTCTTATAT...................................................................................... 25 2 1 1.00 1 1 0 0
.....................................................AAGGTCGATAGAACAGGTCTTGA........................................................................................ 23 2 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAAGAGGTCTTG......................................................................................... 22 1 1 1.00 1 1 0 0
......................................................AGGTAGATAGAACAGGTCTTGTTAG..................................................................................... 25 1 1 1.00 1 1 0 0
.....................................................AAGGCAGATAGAACAGGTCTTGTA....................................................................................... 24 2 1 1.00 1 1 0 0
.....................................................AAAGTAGATAGAACAGGTCTTGT........................................................................................ 23 1 1 1.00 1 1 0 0
......................................................AGGCAGATAGAACAGGTCTTGTA....................................................................................... 23 2 1 1.00 1 1 0 0
......................................................AGGTAGATAGAACCGGTCTTGAT....................................................................................... 23 2 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAACCGGTCTTAT........................................................................................ 23 2 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAACAGGTCTTCAA....................................................................................... 24 3 1 1.00 1 1 0 0
.....................................................TAGGTCGATAGAACAGGTCTTG......................................................................................... 22 2 1 1.00 1 1 0 0
.....................................................AAGGAAGATAGAACAGGTCTT.......................................................................................... 21 1 1 1.00 1 0 1 0
.....................................................AAGGTAGATAGAACAGGTCTAG......................................................................................... 22 1 1 1.00 1 1 0 0
.....................................................AAGGTACATAGAACAGGTCTTG......................................................................................... 22 1 1 1.00 1 1 0 0
.....................................................AAGGAAGATAGAACCGGTCTTGT........................................................................................ 23 2 1 1.00 1 1 0 0
....................................................AAAGGTAGCTAGAACAGGTCTTT......................................................................................... 23 2 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAACAGGACTTGA........................................................................................ 23 2 1 1.00 1 1 0 0
......................................................AGGTAGATAGCACAGGTCTTGTTT...................................................................................... 24 1 1 1.00 1 1 0 0
......................................................AGGGAGATAGAACCGGTCTTGTT....................................................................................... 23 2 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGATCAGGTCTTG......................................................................................... 22 1 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGCA....................................................................................... 24 2 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAACAGGTCTTAGT....................................................................................... 24 2 1 1.00 1 1 0 0
.....................................................CAGGTAGATAGAACAGGTCTTGTAA...................................................................................... 25 3 1 1.00 1 1 0 0
......................................................TGGTAGATAGACCAGGTCTTG......................................................................................... 21 2 1 1.00 1 1 0 0
............................................................................................AGACCTACTTATCAACCAACA................................................... 21 1 1 1.00 1 1 0 0
...........................................................................................AAGACCTACTTATCTACCAACAG.................................................. 23 0 1 1.00 1 0 1 0
......................................................AGGTAGATAGAACAGGTCTTGTG....................................................................................... 23 1 1 1.00 1 1 0 0
....................................................CAAGGTAGCTAGCACAGGTCTTGTT....................................................................................... 25 3 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAATAGGTCTTGTA....................................................................................... 24 2 1 1.00 1 1 0 0
......................................................AGGTAGATAGGACAGGTCTTG......................................................................................... 21 1 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAACAGGTCTTGAAG...................................................................................... 25 3 2 1.00 2 2 0 0
.......................................................GGTAGATAGAACAGGTCTTGAC....................................................................................... 22 2 1 1.00 1 1 0 0
.....................................................AAGGTAAATAGAACAGGTCTTG......................................................................................... 22 1 1 1.00 1 1 0 0
.....................................................AAGGTCGATAGAACAGGTCTTGT........................................................................................ 23 1 1 1.00 1 1 0 0
.........................................................................................TCAAGACCTACTTATCTACCATT.................................................... 23 2 1 1.00 1 1 0 0
.....................................................AAGGTAGCTAGAACAGGTCTTGT........................................................................................ 23 1 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAACCGGTCTTGTAT...................................................................................... 25 2 1 1.00 1 1 0 0
.....................................................TAGGTAGATAGCACAGGTCTTGT........................................................................................ 23 2 1 1.00 1 1 0 0
.....................................................AAGGTAGGTAGAACAGGTCTTGA........................................................................................ 23 2 1 1.00 1 1 0 0
......................................................AGGTAGATAGAACAGGTCTTGAGT...................................................................................... 24 2 1 1.00 1 1 0 0
................................................CAAAAAAGGTAGATAGAACAGGTCTTG......................................................................................... 27 3 1 1.00 1 1 0 0
.....................................................AAGGTAGAAAGAACAGGTCTTAT........................................................................................ 23 2 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAACAGGTA............................................................................................ 19 1 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAAGAGGTCTTGTT....................................................................................... 24 1 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAACGGGTCTTGTAA...................................................................................... 25 3 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAAAAGGTCTT.......................................................................................... 21 1 1 1.00 1 1 0 0
.....................................................CAGGTAGATAGAACAGGTCTTGAA....................................................................................... 24 3 1 1.00 1 1 0 0
......................................................AGGTAGATAGAACAGGTCTTGAC....................................................................................... 23 2 1 1.00 1 1 0 0
......................................................AGGTAGATAGAACAGGCCTTGTTA...................................................................................... 24 2 1 1.00 1 1 0 0
.....................................................AAGGTAGTTAGAACAGGTCTTG......................................................................................... 22 1 1 1.00 1 1 0 0
..........................................................................................CAAGACCCACTTATCTACCAA..................................................... 21 1 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAACAGGTCTTAAG....................................................................................... 24 3 3 1.00 3 3 0 0
.....................................................AAGGTGGATAGAACAGGTCTTGA........................................................................................ 23 2 1 1.00 1 1 0 0
......................................................AGGTAGATAGAACAGGT............................................................................................. 17 0 1 1.00 1 0 1 0
......................................................AGGGAGATAGAACGGGTCTTGTTT...................................................................................... 24 2 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAGCAGGTCTTGA........................................................................................ 23 2 1 1.00 1 1 0 0
......................................................AGGTCGATAGAACAGGTCTTGT........................................................................................ 22 1 1 1.00 1 0 1 0
......................................................AGGTAGATAGAACAGGTCTTGG........................................................................................ 22 1 1 1.00 1 1 0 0
......................................................AGGTAGATAGAACAGGCCTTGTA....................................................................................... 23 2 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAACAGGTCTCGT........................................................................................ 23 1 1 1.00 1 1 0 0
......................................................CGGTAGATCGAACAGGTCTTGTTA...................................................................................... 24 3 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGAACAGGTCTAGAT....................................................................................... 24 2 1 1.00 1 1 0 0
.....................................................AAGGTAGATAGCACGGGTCTTGTT....................................................................................... 24 2 1 1.00 1 1 0 0

Anti-sense strand reads

CTGTTATCTCAGGAACTTCAGTTCGACTGAGACGGAAATCGGAGGATGTACTTTTCCATCTATCTTGTCCAGAACAAACGTTTTATTTAAGTTCTGGATGAATAGATGGTTGTCGATAATGGATGAAGGGTGTCGGAAGGATGTCCTTCACCCACCTCATCTGA
************************************.................(((((((((...((((((((...............))))))))..)))))))))...................**************************************
Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:31 PM