ID:

rno-mir-154

 Coordinate:

chr6:133888586-133888669 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.1 -34.8 -34.6

Sense Strand Reads

GGACTTCCTGGAGGAAGCCAGCTTCAGAGAAGAGATGCTGGTGCCCATGTGCGGTGCTTGAAGATAGGTTATCCGTGTTGCCTTCGCTTTATTCGTGACGAATCATACACGGTTGACCTATTTTTCAGTACCAAATCCCGCCTTGGAGGAATTTCTGGGGTGGGACTGTGGTGTTAGCGCCTCT
*************************************************...((((((.((((((((((((.((((((....((((.((.......))))))....)))))).)))))))))))).)))))).....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
....................................................................................................AATCATACACGGTTGACCTATT.............................................................. 22 0 1 238.00 238 234 2 2
................................................................TAGGTTATCCGTGTTGCCTTCG.................................................................................................. 22 0 1 100.00 100 88 11 1
................................................................TAGGTTATCCGTGTTGCCTTCGA................................................................................................. 23 1 1 74.00 74 63 10 1
................................................................TAGGTTATCCGTGTTGCCTTCGT................................................................................................. 23 1 1 19.00 19 18 0 1
....................................................................................................AATCATACACGGTTGACCTATTT............................................................. 23 0 1 14.00 14 14 0 0
....................................................................................................AATCATACACGGTTGACCTAT............................................................... 21 0 1 9.00 9 9 0 0
.................................................................AGGTTATCCGTGTTGCCTTCG.................................................................................................. 21 0 1 8.00 8 8 0 0
................................................................TAGGTTATCCGTGTTGCCTTCGAA................................................................................................ 24 2 1 6.00 6 6 0 0
....................................................................................................AATCATACACGGTTGACCTATA.............................................................. 22 1 1 6.00 6 6 0 0
.....................................................................................................ATCATACACGGTTGACCTATT.............................................................. 21 0 1 5.00 5 3 2 0
....................................................................................................AATCATACACGGTTGACCTATTTT............................................................ 24 0 1 4.00 4 4 0 0
...................................................................................................AAATCATACACGGTTGACCTATT.............................................................. 23 1 1 4.00 4 4 0 0
....................................................................................................AATCATACACGGTTGACCTATTA............................................................. 23 1 1 3.00 3 3 0 0
................................................................TAGGTTATCCGTGTTGCCTTCAA................................................................................................. 23 2 1 3.00 3 3 0 0
....................................................................................................AATCATACACGGTTGACCTATTTAT........................................................... 25 1 1 3.00 3 3 0 0
....................................................................................................AATCATACACGGTTGACCTATTTA............................................................ 24 1 1 2.00 2 2 0 0
................................................................TAGGTTATCCGTGTTGCCTTCGC................................................................................................. 23 0 1 2.00 2 2 0 0
....................................................................................................AATCATACACGGTCGACCTATT.............................................................. 22 1 1 2.00 2 2 0 0
................................................................TAGGTTATCCGTGTTGCCTTCA.................................................................................................. 22 1 1 2.00 2 2 0 0
...................................................................GTTATCCGTGTTGCCTTCGCTT............................................................................................... 22 0 1 2.00 2 2 0 0
................................................................TAGGTTATCCGTGTTGCCTTCGTT................................................................................................ 24 1 1 2.00 2 2 0 0
................................................................TAGGTTATCCGTGTTGCCTTCGAAA............................................................................................... 25 3 1 2.00 2 2 0 0
................................................................TAGGTTATCCGTGTTGCCTTC................................................................................................... 21 0 1 2.00 2 2 0 0
................................................................TAGGTTATCCGTGTTGCCTTCGAATA.............................................................................................. 26 3 1 1.00 1 1 0 0
....................................................................................................AATAATACCCGGTTGACCTATT.............................................................. 22 2 1 1.00 1 1 0 0
................................................................TAGGTTATCCGTGTTGCCTTCAAT................................................................................................ 24 2 1 1.00 1 1 0 0
....................................................................................................AATCATACCCGGTTGACCTATT.............................................................. 22 1 1 1.00 1 1 0 0
....................................................................................................AATCATACACGGTTGGCCTATT.............................................................. 22 1 1 1.00 1 1 0 0
....................................................................................................AATCATACACGGTTGACCTATC.............................................................. 22 1 1 1.00 1 1 0 0
.......................................................................................................CATACACGGTTGACCTATT.............................................................. 19 0 1 1.00 1 1 0 0
................................................................TAGGTTATCCGTGTTGCCTTCGACA............................................................................................... 25 3 1 1.00 1 1 0 0
.................................................................AGGTTATCCGTGTTGCATTC................................................................................................... 20 1 1 1.00 1 1 0 0
................................................................TAGGTTATCCGTGTTGCCT..................................................................................................... 19 0 1 1.00 1 1 0 0
....................................................................................................AATCATACACGGTTGAACTATT.............................................................. 22 1 1 1.00 1 1 0 0
........................................................................................................ATACACGGTTGACCTATT.............................................................. 18 0 1 1.00 1 0 0 1
....................................................................................................GATCATACCCGGTTGACCTATT.............................................................. 22 2 1 1.00 1 1 0 0
................................................................TAGGTTATCCGTGTTGACCTCG.................................................................................................. 22 2 1 1.00 1 1 0 0
................................................................TAGGTTATCCGTGTTGACTTCGCTA............................................................................................... 25 2 1 1.00 1 1 0 0
....................................................................................................AATCATACACGGTTGACCTATTAT............................................................ 24 1 1 1.00 1 1 0 0
................................................................AAGGTTATCCGTGTTGCCTTCGA................................................................................................. 23 2 1 1.00 1 1 0 0
.................................................................................................ACGAATCATACACGGTTGACCTATT.............................................................. 25 0 1 1.00 1 1 0 0
................................................................TAGGTTATCCGTGTTGCCTTCGCTT............................................................................................... 25 0 1 1.00 1 1 0 0
.............................................................CGGTAGGTTATCCGTGTTGCCTTCG.................................................................................................. 25 2 1 1.00 1 1 0 0
....................................................................................................AATAATACACGGTTGACCTATT.............................................................. 22 1 1 1.00 1 1 0 0
................................................................TAGGTTATCCGTGTTGCCTTCGTAA............................................................................................... 25 3 1 1.00 1 1 0 0
.................................................................AGGTTATCCGTGTTGCCTTCGA................................................................................................. 22 1 1 1.00 1 1 0 0
....................................................................................................CATCATACCCGGTTGACCTATT.............................................................. 22 2 1 1.00 1 1 0 0
....................................................................................................AATTATACCCGGTTGACCTATT.............................................................. 22 2 1 1.00 1 1 0 0
...................................................................................................AAATCATACACGGTTGACCTAT............................................................... 22 1 1 1.00 1 1 0 0
....................................................................................................AATCATACACGGTTGACCTATTAG............................................................ 24 2 1 1.00 1 1 0 0
................................................................TAGGTTATCCGTGTTGACTTCGA................................................................................................. 23 2 1 1.00 1 1 0 0
.....................................................................................................ATCATACACGGTTGACCTATTT............................................................. 22 0 1 1.00 1 1 0 0
....................................................................................................AATCATACACGGTTGACC.................................................................. 18 0 1 1.00 1 1 0 0
................................................................TAGGTTATCCGTGTTGTCTTCGA................................................................................................. 23 2 1 1.00 1 1 0 0
....................................................................................................AATCATACACGGTTAACCTATT.............................................................. 22 1 1 1.00 1 1 0 0
................................................................TAGGTTATCCGTGTTGCCTTCGTA................................................................................................ 24 2 1 1.00 1 1 0 0
................................................................TAGGTTATCCGTGTCGCCTTCG.................................................................................................. 22 1 1 1.00 1 1 0 0
................................................................TAGGTTATCCGTGTTCCCTTCGT................................................................................................. 23 2 1 1.00 1 1 0 0
...........................................................TTCGATAGGTTATCCGTGTTGCC...................................................................................................... 23 3 1 1.00 1 1 0 0
....................................................................................................AATCATACAAGGTTGACCTATT.............................................................. 22 1 1 1.00 1 1 0 0
..........................................................TCAAAATAGGTTATCCGTGTTGCCTTCGA................................................................................................. 29 3 1 1.00 1 1 0 0
....................................................................................................AATCATACACGGTAGACCTATT.............................................................. 22 1 1 1.00 1 1 0 0
...............................................................ATAGGTTATCCGTGTTGCCTTCG.................................................................................................. 23 0 1 1.00 1 0 0 1
................................................................TAGGTTATCCGTGTTGCCTTCGCT................................................................................................ 24 0 1 1.00 1 1 0 0
................................................................TAGGTTATCCGTGTTGCCTTCGCTA............................................................................................... 25 1 1 1.00 1 1 0 0
....................................................................................................AATAATACACGGTTGACCTAT............................................................... 21 1 1 1.00 1 1 0 0
................................................................TAGGTTATCCGTGTTGCCTTCAT................................................................................................. 23 2 1 1.00 1 1 0 0
....................................................................................................AATCACACACGGTTGACCTATT.............................................................. 22 1 1 1.00 1 1 0 0
....................................................................................................AATCATACCCGGTTGACCTATA.............................................................. 22 2 2 0.50 1 1 0 0
................................................................TAGGTTATCCGAGTTGCCTTCCT................................................................................................. 23 3 2 0.50 1 1 0 0
....................................................................................................AATCATACGCGGTTGACCTATTAA............................................................ 24 3 2 0.50 1 1 0 0
................................................................TAGGTTATCCGTGCTGCCTTCAT................................................................................................. 23 3 4 0.25 1 1 0 0
....................................................................................................AACAATACACGGTAGACCTATT.............................................................. 22 3 10 0.10 1 0 1 0

Anti-sense strand reads

CCTGAAGGACCTCCTTCGGTCGAAGTCTCTTCTCTACGACCACGGGTACACGCCACGAACTTCTATCCAATAGGCACAACGGAAGCGAAATAAGCACTGCTTAGTATGTGCCAACTGGATAAAAAGTCATGGTTTAGGGCGGAACCTCCTTAAAGACCCCACCCTGACACCACAATCGCGGAGA
***********************************************...((((((.((((((((((((.((((((....((((.((.......))))))....)))))).)))))))))))).)))))).....************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:48 PM