ID:

rno-mir-147

 Coordinate:

chr3:114775343-114775421 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.4 -28.8 -28.8
mature
star
  1. chr3:114775354-114775377 +
  2. chrX:152889584-152889607 +

Sense Strand Reads

GGAGAGCGACCAGATGATTACTCGCTGCTCCTTTCTTCCAAAGAACACTCTATGAATCTAGTGGAAACACTTCTGCACAAACTCGATTTTGATGCCAGTGTGCGGAAATGCTTCTGCTACATTTTTAGGGTTTGCCTGCATTCTTTGGATCCTGCATAAGCAAGCGAAGGTAGCACATA
**********************************************((((((.((((.((((((((.((.(((((((((...(((....)))......))))))))).)).)))))))).)))).))))))...********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
.................................................................................................GTGTGCGGAAATGCTTCTGCTAT........................................................... 23 1 1 13.00 13 12 0 1
.................................................................................................GTGTGCGGAAATGCTTCTGCTAAA.......................................................... 24 1 1 12.00 12 12 0 0
.................................................................................................GTGTGCGGAAATGCTTCTGCTAA........................................................... 23 1 1 8.00 8 8 0 0
.......................................................................................................................................................CTGCATAAGCAAGCGAAGGTCG...... 22 1 1 7.00 7 0 7 0
.................................................................................................GTGTGCGGAAATGCTTCTGCTATCG......................................................... 25 3 1 7.00 7 0 7 0
................................................................................................AGTGTGCGGAAATGCTTCTGCTA............................................................ 23 0 1 5.00 5 5 0 0
.............................................................TGGAAACACTTCTGCACAAACTCG.............................................................................................. 24 0 2 4.50 9 9 0 0
.................................................................................................GTGTGCGGAAATGCTTCTGCTCG........................................................... 23 2 1 4.00 4 0 4 0
................................................................................................AGTGTGCGGAAATGCTTCTGCTATTTT........................................................ 27 2 1 2.00 2 2 0 0
................................................................................................AGTGTGCGGAAATGCTTCTGCTATAAT........................................................ 27 2 1 2.00 2 2 0 0
.................................................................................................GTGTGCGGAAATGCTTCTGCTAAGT......................................................... 25 2 1 2.00 2 2 0 0
................................................................................................................................GGTTTGCCTGCATTCTTTGGATCG........................... 24 1 2 2.00 4 0 4 0
.................................................................................................GTGTGCGGAAATGCTTCTGCTAAGA......................................................... 25 3 1 2.00 2 2 0 0
.................................................................................................GTGTGCGGAAATGCTTCTGCTATAT......................................................... 25 1 1 2.00 2 2 0 0
.................................................................................................GTGTGCGGAAATGCTTCTGCTT............................................................ 22 1 1 2.00 2 0 0 2
.................................................................................................GTGTGCGGAAATGCTTCT................................................................ 18 0 1 2.00 2 1 0 1
.................................................................................................GTGTGCGGAAATGCTTCTGCTTAT.......................................................... 24 3 1 2.00 2 2 0 0
................................................................................................AGTGTGCGGAAATGCTTCTGCTAAA.......................................................... 25 1 1 1.00 1 1 0 0
.................................................................................................GTGTGCGGAAATGCTTCTGCTAG........................................................... 23 1 1 1.00 1 1 0 0
.................................................................................................GGGTGCGGAAATGCTTCTGCTAG........................................................... 23 2 1 1.00 1 1 0 0
................................................................................................AGTGTGCGGAAATGCTTCTGC.............................................................. 21 0 1 1.00 1 0 0 1
.................................................................................................GTGTGCGGAAATGCTTCTGATAT........................................................... 23 2 1 1.00 1 1 0 0
................................................................................................AGTGTGCGGAAATGCTTCTGCTT............................................................ 23 1 1 1.00 1 1 0 0
...............................................................................................................................................TTTGGATCCTGCATAAGCAAGCGAAGG......... 27 0 1 1.00 1 0 0 1
..................................................................................................TGTGCGGAAATGCTTCTGCTTAT.......................................................... 23 3 2 1.00 2 2 0 0
................................................................................................AGTGTGCGGAAATGCTTCTGCT............................................................. 22 0 1 1.00 1 1 0 0
........ACCAGATGATTACTCGCTGCTCCTTT................................................................................................................................................. 26 0 1 1.00 1 0 0 1
........................................................................................................................................TGCATTCTTTGGATCCTGCATAAGCAAGCGA............ 31 0 1 1.00 1 0 0 1
.................................................................................................GTGTGCGGAAATGCTTCTGCTCAA.......................................................... 24 2 1 1.00 1 1 0 0
................................................................................................AGTGTGCGGAAATGCTTCTGCTATAT......................................................... 26 1 1 1.00 1 0 0 1
................................................................................................AGTGTGCGGAAATGCTTCTGCTTA........................................................... 24 2 1 1.00 1 1 0 0
.................................................................................................GTGTGCGGAAATGCTTCTGCTATTT......................................................... 25 2 1 1.00 1 1 0 0
................................................................................................AGTGTGCGGAAATGCTTCTGCTAG........................................................... 24 1 1 1.00 1 1 0 0
.................................................................................................GTGTGCGGAAATGCTTCTGCTATT.......................................................... 24 2 1 1.00 1 0 0 1
.................................................................................................GTGTGCGGAAATGCTTCTGCTATGA......................................................... 25 3 1 1.00 1 1 0 0
.................................................................................................GTGTGCGGAAATGCTTCTGCT............................................................. 21 0 1 1.00 1 0 0 1
.................................................................................................GTGTTCGGAAATGCTTCTGCTAAA.......................................................... 24 2 1 1.00 1 1 0 0
............................TCCTTTCTTCCAAAGAACACTCTATGA............................................................................................................................ 27 0 2 0.50 1 0 0 1
.............................................................TGGAAACACTTCTGCACAAACTCA.............................................................................................. 24 1 2 0.50 1 1 0 0
.............................................................TGGAAACACTTCTGCACAAACT................................................................................................ 22 0 2 0.50 1 0 0 1
............................................................TTGGAAACACTTCTGCACAAAC................................................................................................. 22 1 2 0.50 1 0 0 1
................................................................................................................................GGTTTGCCTGCTTTCTTTGGATAG........................... 24 3 2 0.50 1 0 1 0
.................................................................................................GTGTGCGGAAATGCCTCTG............................................................... 19 1 2 0.50 1 0 0 1
.......................................AAAGAACACTCTATGAATCTAGTGGAAAC............................................................................................................... 29 0 2 0.50 1 0 0 1
..................................................................................................TGTGCGGAAATACTTCTGCTAAT.......................................................... 23 3 6 0.17 1 1 0 0
................................................................................................AGTGTGCGGAAATGCTTCTGAAT............................................................ 23 3 9 0.11 1 1 0 0

Anti-sense strand reads

CCTCTCGCTGGTCTACTAATGAGCGACGAGGAAAGAAGGTTTCTTGTGAGATACTTAGATCACCTTTGTGAAGACGTGTTTGAGCTAAAACTACGGTCACACGCCTTTACGAAGACGATGTAAAAATCCCAAACGGACGTAAGAAACCTAGGACGTATTCGTTCGCTTCCATCGTGTAT
*********************************************((((((.((((.((((((((.((.(((((((((...(((....)))......))))))))).)).)))))))).)))).))))))...********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:44 PM