ID:

rno-mir-144

 Coordinate:

chr10:65291365-65291447 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.9 -37.6 -37.4

Sense Strand Reads

CTGACCCAATCCCCCTGGCTCTCTCCCGGCCTGCTGCTCCTCCTCCTCCAGGGCCTTGGCTGGGATATCATCATATACTGTAAGTTTGTGATGAGACACTACAGTATAGATGATGTACTAGTCTGGGTACCCCAAGACTAGAGCCTGCCTGGTTTGAAGCAGAGGTGCTGAAGTGCATGGGGC
***********************************************...((((((.((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).)))..)))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
..............................................................GGATATCATCATATACTGTAAGT.................................................................................................. 23 0 1 209.00 209 209 0 0
...................................................................................................TACAGTATAGATGATGTACTA............................................................... 21 0 1 97.00 97 95 1 1
...................................................................................................TACAGTATAGATGATGTACT................................................................ 20 0 1 97.00 97 96 1 0
...................................................................................................TACAGTATAGATGATGTACTT............................................................... 21 1 1 33.00 33 33 0 0
...................................................................................................TACAGTATAGATGATGTACTAT.............................................................. 22 1 1 31.00 31 31 0 0
..............................................................GGATATCATCATATACTGTAAGTT................................................................................................. 24 0 1 20.00 20 20 0 0
...................................................................................................TACAGTATAGATGATGTACTATT............................................................. 23 1 1 19.00 19 19 0 0
...................................................................................................TACAGTATAGATGATGTACTAA.............................................................. 22 1 1 13.00 13 13 0 0
...............................................................GATATCATCATATACTGTAAGTT................................................................................................. 23 0 1 12.00 12 12 0 0
..................................................................................................CTACAGTATAGATGATGTACTAT.............................................................. 23 1 1 8.00 8 8 0 0
..................................................................................................CTACAGTATAGATGATGTACT................................................................ 21 0 1 7.00 7 7 0 0
..................................................................................................CTACAGTATAGATGATGTACTT............................................................... 22 1 1 7.00 7 7 0 0
...............................................................GATATCATCATATACTGTAAGT.................................................................................................. 22 0 1 6.00 6 6 0 0
...................................................................................................TACAGTATAGATGATGTA.................................................................. 18 0 1 5.00 5 4 1 0
....................................................................................................ACAGTATAGATGATGTACTA............................................................... 20 0 1 5.00 5 5 0 0
...................................................................................................TACAGTATAGATGATGTAC................................................................. 19 0 1 5.00 5 4 1 0
...................................................................................................TACAGTATAGATGATGTACTATTTTT.......................................................... 26 3 1 4.00 4 4 0 0
..............................................................GGATATCATCATATACTGTAAG................................................................................................... 22 0 1 4.00 4 4 0 0
...................................................................................................TACAGTATAGATGATGTACTAAT............................................................. 23 1 1 3.00 3 3 0 0
...................................................................................................TACAGTATAGATGATGTACTAGA............................................................. 23 1 1 3.00 3 3 0 0
..................................................................................................CTACAGTATAGATGATGTACTA............................................................... 22 0 1 3.00 3 3 0 0
...................................................................................................TACAGTATAGATGATGTACTATTTT........................................................... 25 2 1 3.00 3 3 0 0
...................................................................................................TACAGTATAGATGATGTACTAGT............................................................. 23 0 1 2.00 2 2 0 0
.................................................................................................AATACAGTATAGATGATGTACT................................................................ 22 1 1 2.00 2 2 0 0
............................................................TGGGATATCATCATATACTGTAA.................................................................................................... 23 0 1 2.00 2 2 0 0
..................................................................................................CTACAGTATAGATGATGTACTAA.............................................................. 23 1 1 2.00 2 2 0 0
....................................................................................................ACAGTATAGATGATGTACT................................................................ 19 0 1 2.00 2 2 0 0
...................................................................................................TACCGTATAGATGATGTACT................................................................ 20 1 1 2.00 2 2 0 0
...................................................................................................TACCGTATCGATGATGTACT................................................................ 20 2 1 2.00 2 2 0 0
..............................................................GGATATCATCATATACTGTAACT.................................................................................................. 23 1 1 2.00 2 2 0 0
....................................................................................................ACAGTATAGATGATGTACTATT............................................................. 22 1 1 2.00 2 2 0 0
..............................................................GGATATCATCATACACTGTAAGT.................................................................................................. 23 1 1 2.00 2 2 0 0
...................................................................................................TACCGTATCGATGATGTACTA............................................................... 21 2 1 2.00 2 2 0 0
...................................................................................................TACAGTATAGATGATGTACCA............................................................... 21 1 1 2.00 2 2 0 0
....................................................................................................ACAGTATAGATGATGTACTAT.............................................................. 21 1 1 2.00 2 2 0 0
..............................................................GGATATCATCATATACTGTAAGTTT................................................................................................ 25 0 1 2.00 2 2 0 0
..................................................................................................CTACAGTATAGATGATGTACTAAT............................................................. 24 1 1 2.00 2 2 0 0
.............................................................AGGATATCATCATATACTGTAAGT.................................................................................................. 24 1 1 2.00 2 2 0 0
.............................................................AGGATATCATCATATACTGTAAGTT................................................................................................. 25 1 1 2.00 2 2 0 0
...................................................................................................TACAGTATAGATGGTGTACT................................................................ 20 1 1 1.00 1 1 0 0
..............................................................GGGTATCATCATATACTGTAAGT.................................................................................................. 23 1 1 1.00 1 1 0 0
...................................................................................................CACAGTATAGATGATGTACTA............................................................... 21 1 1 1.00 1 1 0 0
...................................................................................................AACAGTATAGATGATGTACT................................................................ 20 1 1 1.00 1 1 0 0
...............................................................GATATAATCATATACTGTAAGT.................................................................................................. 22 1 1 1.00 1 1 0 0
..............................................................GGATATCATCATATTCTGTAAGT.................................................................................................. 23 1 1 1.00 1 1 0 0
..............................................................GGATATCATCGTATACTGTAAGT.................................................................................................. 23 1 1 1.00 1 1 0 0
...................................................................................................TCCAGTATAGATGATGTACTA............................................................... 21 1 1 1.00 1 1 0 0
..................................................................................................CTACAGTATAGATGCTGTACTATT............................................................. 24 2 1 1.00 1 1 0 0
...................................................................................................TATCGTATAGATGATGTACTA............................................................... 21 2 1 1.00 1 1 0 0
..............................................................GGATATCATTATATACTGTAAGT.................................................................................................. 23 1 1 1.00 1 1 0 0
..............................................................GGATATCATCATATACTGTAA.................................................................................................... 21 0 1 1.00 1 1 0 0
...................................................................................................TACAGTATAGATGATGTACTAAA............................................................. 23 2 1 1.00 1 1 0 0
.....................................................................................................CAGTATAGATGATGTACTA............................................................... 19 0 1 1.00 1 1 0 0
..............................................................GGATATCATCATATACTGTACGT.................................................................................................. 23 1 1 1.00 1 1 0 0
..................................................................................................CTACAGTATAGATGATGTACTTA.............................................................. 23 2 1 1.00 1 1 0 0
.....................................................................................................CAGTATAGATGATGTACT................................................................ 18 0 1 1.00 1 1 0 0
..................................................................................................CTACAGTATAGATGATGTACTATT............................................................. 24 1 1 1.00 1 1 0 0
..................................................................................................ATACAGTATAGATGATGTACTA............................................................... 22 1 1 1.00 1 1 0 0
................................................................................................ATCTACAGTATAGATGATGTACT................................................................ 23 2 1 1.00 1 1 0 0
..............................................................GGATATCATCATATACTGTAAGG.................................................................................................. 23 1 1 1.00 1 1 0 0
...................................................................................................TGCAGTATAGATGATGTACTA............................................................... 21 1 1 1.00 1 1 0 0
...............................................................GATATCATCATATACTGTAAGTTT................................................................................................ 24 0 1 1.00 1 1 0 0
..................................................................................................CTACAGTATAGATGATGTACTAAAGT........................................................... 26 3 1 1.00 1 1 0 0
..................................................................................................CTACAGTATAGATGATGTACTATTT............................................................ 25 2 1 1.00 1 1 0 0
...................................................................................................TACAGTATAGATGATCTACTA............................................................... 21 1 1 1.00 1 1 0 0
...................................................................................................TACAGTATCGATGATGTACT................................................................ 20 1 1 1.00 1 1 0 0
...................................................................................................TACCGTATAGATGATGTACTATT............................................................. 23 2 1 1.00 1 1 0 0
...................................................................................................TACAGTCTAGATGATGTACTA............................................................... 21 1 1 1.00 1 1 0 0
....................................................................................................ACAGTATAGATGATGTACTAA.............................................................. 21 1 1 1.00 1 1 0 0
...................................................................................................TACAGTATAGATGATGTAAT................................................................ 20 1 1 1.00 1 1 0 0
...................................................................................................TACAGTATAGATGATGTACTTTT............................................................. 23 2 2 1.00 2 2 0 0
..............................................................GGATATCATCATCTACTGTAAGTT................................................................................................. 24 1 1 1.00 1 1 0 0
...................................................................................................TACAGTATAGATGATGTACTTT.............................................................. 22 2 3 1.00 3 3 0 0
...............................................................................................ACTCTACAGTATAGATGAT..................................................................... 19 1 3 0.67 2 2 0 0
...................................................................................................TACAGTATAGATGATGTACTTA.............................................................. 22 2 3 0.67 2 2 0 0
...................................................................................................TACAGTATAGATGTTGTACT................................................................ 20 1 2 0.50 1 1 0 0
..........................................................................................................................CTGGGTACCCCAAGA.............................................. 15 0 10 0.50 5 0 5 0
...............................................................GATATCATCATATCCTGTAAGTT................................................................................................. 23 1 2 0.50 1 1 0 0
...................................................................................................TACAGTATAGACGATGTA.................................................................. 18 1 2 0.50 1 1 0 0
...................................................................................................TACAGTATAGATGCTGTACTA............................................................... 21 1 2 0.50 1 1 0 0
...................................................................................................TACCGTATCGATGATGTACTAGA............................................................. 23 3 2 0.50 1 1 0 0
..................................................................................................ATACAGTATAGATGATGTACTT............................................................... 22 2 2 0.50 1 1 0 0
...................................................................................................TACAGTATAGATGCTGTACT................................................................ 20 1 2 0.50 1 1 0 0
..............................................................GGATATCATCATATCCTGTAAGT.................................................................................................. 23 1 2 0.50 1 1 0 0
...................................................................................................TAAAGTATAGACGATGTACTA............................................................... 21 2 3 0.33 1 1 0 0
..................................................................................................CTACAGTATAGCTGGTGTACTAT.............................................................. 23 3 4 0.25 1 1 0 0
...................................................................................................TAACGTATAGATGATGTACT................................................................ 20 2 4 0.25 1 1 0 0
...................................................................................................TACAGTATAGATGATGTACTAAAA............................................................ 24 3 5 0.20 1 1 0 0
...................................................................................................AACAGTATAGATGAGGTACT................................................................ 20 2 11 0.09 1 1 0 0
...................................................................................................AACAGTATAGATGATGTACTT............................................................... 21 2 11 0.09 1 1 0 0
...................................................................................................TACAGTATAGGTGATGTACTTT.............................................................. 22 3 20 0.05 1 1 0 0

Anti-sense strand reads

GACTGGGTTAGGGGGACCGAGAGAGGGCCGGACGACGAGGAGGAGGAGGTCCCGGAACCGACCCTATAGTAGTATATGACATTCAAACACTACTCTGTGATGTCATATCTACTACATGATCAGACCCATGGGGTTCTGATCTCGGACGGACCAAACTTCGTCTCCACGACTTCACGTACCCCG
************************************************...((((((.((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).)))..)))...*********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528817
Adult_testes
..........................................................AGACCCTATAGTAGTATA........................................................................................................... 18 1 9 0.11 1 1

Generated: 04/30/2015 at 05:32 PM