ID:

rno-mir-139

 Coordinate:

chr1:166589545-166589612 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.2 -43.2 -43.2

Sense Strand Reads

CCCCCCTCAGGGAGTGGCGGTTCCCCTGGGGGGCGCCAGGACAGGCGCAGGTGTATTCTACAGTGCACGTGTCTCCAGTGTGGCTCGGAGGCTGGAGACGCGGCCCTGTTGGAGTAACAACTGAAGCCAGAGTCTTCGAAGGGTGGTGGGCTAAGGGGGAAGAGGGCA
***********************************........(((.(((.((((((((((((.((.((((((((((((...........)))))))))))))).))).)))))).))).)))..))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
........................................................TCTACAGTGCACGTGTCTCCAGT......................................................................................... 23 0 1 217.00 217 212 3 2
........................................................TCTACAGTGCACGTGTCTCCAGTAA....................................................................................... 25 2 1 34.00 34 33 1 0
........................................................TCTACAGTGCACGTGTCTCCAGA......................................................................................... 23 1 1 30.00 30 30 0 0
........................................................TCTACAGTGCACGTGTCTCCAGTA........................................................................................ 24 1 1 24.00 24 24 0 0
........................................................TCTACAGTGCACGTGTCTCCAG.......................................................................................... 22 0 1 23.00 23 23 0 0
........................................................TCTACAGTGCACGTGTCTCCAGTAT....................................................................................... 25 1 1 15.00 15 15 0 0
........................................................TCTACAGTGCACGTGTCTCCA........................................................................................... 21 0 1 13.00 13 13 0 0
........................................................TCTACAGTGCACGTGTCTCCAGTT........................................................................................ 24 1 1 9.00 9 9 0 0
........................................................TCTACAGTGCACGTGTCTCCAGTAAA...................................................................................... 26 3 1 8.00 8 8 0 0
........................................................TCTACAGTGCACGTGTCTCCAGTTA....................................................................................... 25 2 1 7.00 7 7 0 0
........................................................TCTACAGTGCACGTGTCTCC............................................................................................ 20 0 1 6.00 6 6 0 0
.........................................................CTACAGTGCACGTGTCTCCAGTAT....................................................................................... 24 1 1 6.00 6 6 0 0
........................................................TCTACAGTGCACGTGTCTCCAA.......................................................................................... 22 1 1 5.00 5 5 0 0
.........................................................CTACAGTGCACGTGTCTCCAGT......................................................................................... 22 0 1 5.00 5 5 0 0
.........................................................CTACAGTGCACGTGTCTCCAG.......................................................................................... 21 0 1 4.00 4 4 0 0
........................................................TCTCCAGTGCACGTGTCTCCAGT......................................................................................... 23 1 1 4.00 4 3 1 0
........................................................TCTACAGTGCACGTGTCTCCAT.......................................................................................... 22 1 1 4.00 4 4 0 0
........................................................TCTACAGTGCACGTGTCTCCAGTTT....................................................................................... 25 1 1 4.00 4 4 0 0
........................................................TCTACAGTGCACGTGTCTCCAGTTAT...................................................................................... 26 3 1 3.00 3 3 0 0
........................................................TCTACAGTGCACGTGTCTCCAGTGA....................................................................................... 25 1 1 3.00 3 3 0 0
........................................................TCTACAGTGCACGTGTCTCCAAA......................................................................................... 23 2 1 3.00 3 3 0 0
........................................................TCTACAGTGCACGTGTCTCCAGAAA....................................................................................... 25 3 1 2.00 2 2 0 0
........................................................TCTACAGCGCACGTGTCTCCAGT......................................................................................... 23 1 1 2.00 2 2 0 0
............................................................................................TGGAGACGCGGCCCTGTTGGAA...................................................... 22 1 1 2.00 2 2 0 0
........................................................TCTACAGTGCACGTGTCTCCAGC......................................................................................... 23 1 1 2.00 2 2 0 0
........................................................TCTACAGTGCACGTGTCTCCAGTTTA...................................................................................... 26 2 1 2.00 2 2 0 0
........................................................TCTACAGTGCAAGTGTCTCCAGT......................................................................................... 23 1 1 2.00 2 2 0 0
.........................................................CTACAGTGCACGTGTCTCCAGTATT...................................................................................... 25 2 1 2.00 2 2 0 0
.........................................................CTACAGTGCACGTGTCTCCAGTT........................................................................................ 23 1 1 2.00 2 2 0 0
........................................................TCTACAGTGCACGTGTCTCCAGAA........................................................................................ 24 2 1 2.00 2 2 0 0
........................................................TCTACAGTGCACGTGTCTCCAAT......................................................................................... 23 1 1 2.00 2 2 0 0
......................................................AATCTACAGTGCACGTGTCTCCA........................................................................................... 23 1 1 2.00 2 2 0 0
........................................................TCTACAGTGCACGTGTCTCCAGTAG....................................................................................... 25 2 1 2.00 2 2 0 0
........................................................TCTACAGTGCAAGTGTCTCCAGG......................................................................................... 23 2 1 1.00 1 1 0 0
........................................................TCTACAGTGCACGTGTCTCCAGTTTT...................................................................................... 26 2 1 1.00 1 1 0 0
.......................................................ATCTACAGTGCACGTGTCTCCAG.......................................................................................... 23 1 1 1.00 1 1 0 0
.............................................................AGTGCACGTGTCTCCAGT......................................................................................... 18 0 1 1.00 1 0 0 1
.........................................................CTACAGTGCACGTGTCTCCAGCAT....................................................................................... 24 2 1 1.00 1 1 0 0
........................................................TCTACAGTGCATGTGTCTCCAGT......................................................................................... 23 1 1 1.00 1 1 0 0
........................................................TCTACAGTGTACGTGTCTCCAGT......................................................................................... 23 1 1 1.00 1 1 0 0
........................................................TCTACAGTGCACGTGTCT.............................................................................................. 18 0 1 1.00 1 0 0 1
........................................................TCTACAGTGCAAGTGTCTCCAGA......................................................................................... 23 2 1 1.00 1 1 0 0
........................................................TCTACAGTGCACGCGTCTCC............................................................................................ 20 1 1 1.00 1 1 0 0
........................................................TCTACAGTGCACGTGTCTCCCGT......................................................................................... 23 1 1 1.00 1 1 0 0
........................................................TCTACAGTGCACGTGTCTCCAC.......................................................................................... 22 1 1 1.00 1 1 0 0
.........................................................CTACAGTGCACGTGTCTCCAGAT........................................................................................ 23 2 1 1.00 1 1 0 0
.......................................................ATCTACAGTGAACGTGTCTCCAGT......................................................................................... 24 2 1 1.00 1 1 0 0
........................................................TCTACAGTGCACGTGTCCCCAGT......................................................................................... 23 1 1 1.00 1 1 0 0
.......................................................ATCTACAGTGCACGTGTCTCCAGT......................................................................................... 24 1 1 1.00 1 1 0 0
........................................................TCTACAGTGCACGTGTCTCAAGT......................................................................................... 23 1 1 1.00 1 1 0 0
........................................................TCTACAGAGCACGTGTCTCCA........................................................................................... 21 1 1 1.00 1 1 0 0
........................................................TCAACAGTGCACGTGTCTCCAGT......................................................................................... 23 1 1 1.00 1 1 0 0
........................................................TCTACAGTGCACATGTCTCCAGTAT....................................................................................... 25 2 1 1.00 1 1 0 0
........................................................TCTACAGTACACGTGTCTCCAGA......................................................................................... 23 2 1 1.00 1 1 0 0
........................................................TCTACAGTGCACGTGTCTCCAGTTAG...................................................................................... 26 2 1 1.00 1 1 0 0
.........................................................CTACAGTGCACGTGTCTCCAAT......................................................................................... 22 1 1 1.00 1 1 0 0
........................................................TCTACAGAGCACGTGTCTCCAGTTT....................................................................................... 25 2 1 1.00 1 1 0 0
........................................................TCTACAGTGCACGTGTCTCCAGTC........................................................................................ 24 1 1 1.00 1 1 0 0
........................................................TCTACAGTGCACGCGTCTCCAGT......................................................................................... 23 1 1 1.00 1 1 0 0
.........................................................CTACAGTGCAAGTGTCTCCAGT......................................................................................... 22 1 1 1.00 1 1 0 0
......................................................GATCTACAGTGCACGTGTCTCCAGT......................................................................................... 25 2 1 1.00 1 1 0 0
....................................................AAAATCTACAGTGCACGTGTCTCCAGT......................................................................................... 27 3 1 1.00 1 1 0 0
............................................................................................TGGCGACGCGGCCCTGTTGGT....................................................... 21 2 2 0.50 1 1 0 0
.......................................................ATCTACAGCGCACGTGTCTCCAGA......................................................................................... 24 3 2 0.50 1 1 0 0
........................................................TCTACAGTGCACGTGTCTCCAAAA........................................................................................ 24 3 2 0.50 1 1 0 0
..............................................................................................TAGACGCGGCCCTGTTGGAGT..................................................... 21 1 2 0.50 1 1 0 0
........................................................TCTACAGTCCACGTGTCTCCAT.......................................................................................... 22 2 3 0.33 1 1 0 0
.........................................................CTACAGTGCATGTGTCTCCAA.......................................................................................... 21 2 4 0.25 1 1 0 0

Anti-sense strand reads

GGGGGGAGTCCCTCACCGCCAAGGGGACCCCCCGCGGTCCTGTCCGCGTCCACATAAGATGTCACGTGCACAGAGGTCACACCGAGCCTCCGACCTCTGCGCCGGGACAACCTCATTGTTGACTTCGGTCTCAGAAGCTTCCCACCACCCGATTCCCCCTTCTCCCGT
***********************************........(((.(((.((((((((((((.((.((((((((((((...........)))))))))))))).))).)))))).))).)))..))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:31 PM