ID:

rno-mir-135a

 Coordinate:

chr7:32894877-32894976 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.2 -33.2 -33.2
mature
  1. chr7:32894932-32894954 -
  2. chr8:114847396-114847418 +
star

Sense Strand Reads

TGGAAATGGTTTTGAAGTCGTGTGAAGAAAATAAGTTTTACATCCGGCCAAGATAAATTCACTCTAGTGCTTTATGGCTTTTTATTCCTATGTGATCGTAATAAAGTCTCATGTAGGGATGGAAGCCATGAAATACATTGTGAAAATTCATCAACTAAGAAGGGGCCATCAGAATAGAGAACTAGAGCCTCTGGAACGTG
*********************************************************(((((....(((.((((((((((((.((((((((((((.............)))))))))))))))))))))))).)))...))))).....*************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
........................................................................TATGGCTTTTTATTCCTATGTGA......................................................................................................... 23 0 2 655.00 1310 1286 21 3
........................................................................TATGGCTTTTTATTCCTATGTGAA........................................................................................................ 24 1 2 46.00 92 88 1 3
........................................................................TATGGCTTTTTATTCCTATGTGT......................................................................................................... 23 1 2 27.50 55 55 0 0
........................................................................TATGGCTTTTTATTCCTATGTG.......................................................................................................... 22 0 2 27.00 54 53 0 1
........................................................................TATGGCTTTTTATTCCTATGT........................................................................................................... 21 0 2 25.00 50 49 0 1
.........................................................................ATGGCTTTTTATTCCTATGTGA......................................................................................................... 22 0 2 24.50 49 49 0 0
........................................................................TATGGCTTTTAATTCCTATGTGA......................................................................................................... 23 1 3 12.33 37 37 0 0
........................................................................TATGGCTTTTTATTCCTATGTGAT........................................................................................................ 24 0 2 11.50 23 23 0 0
.......................................................................ATATGGCTTTTTATTCCTATGTGA......................................................................................................... 24 1 2 10.00 20 13 0 7
..........................................................................TGGCTTTTTATTCCTATGTGA......................................................................................................... 21 0 2 7.50 15 15 0 0
.............................................................................CTTTTTATTCCTATGTGA......................................................................................................... 18 0 2 6.00 12 2 10 0
........................................................................TATGGCTTTTGATTCCTATGTGA......................................................................................................... 23 1 3 5.67 17 17 0 0
....AATGGTTTTGAAGTCG.................................................................................................................................................................................... 16 0 1 5.00 5 0 5 0
........................................................................TATGGCTTTTTATTCCTATGTAA......................................................................................................... 23 1 2 4.50 9 9 0 0
...............................................................................................................TGTAGGGATGGAAGCCATGAAT................................................................... 22 1 1 4.00 4 4 0 0
.........................................................................ATGGCTTTTTATTCCTATGTGAT........................................................................................................ 23 0 2 4.00 8 8 0 0
........................................................................TATGGCTTTTTCTTCCTATGTGA......................................................................................................... 23 1 2 4.00 8 7 1 0
........................................................................TATGGCTTTTTATTCCTATGTTA......................................................................................................... 23 1 2 3.50 7 7 0 0
........................................................................TATCGCTTTTTATTCCTATGTGA......................................................................................................... 23 1 2 2.50 5 5 0 0
.........................................................................ATGGCTTTTTATTCCTATGTGT......................................................................................................... 22 1 2 2.00 4 4 0 0
.........................................................................ATGGCTTTTTATTCCTATGTG.......................................................................................................... 21 0 2 2.00 4 4 0 0
...............................................................................................................TGTAGGGATGGAAGCCATGAAAT.................................................................. 23 0 1 2.00 2 2 0 0
...............................................................................................................TGTAGGGATGGAAGCCATGAA.................................................................... 21 0 1 2.00 2 1 0 1
........................................................................TATGGCTTTTTATTCCTATGTCA......................................................................................................... 23 1 2 2.00 4 4 0 0
........................................................................TATGGCTTTTAATTCCTATGT........................................................................................................... 21 1 3 2.00 6 6 0 0
........................................................................TATGGCTTTTCATTCCTATGTGATCG...................................................................................................... 26 1 2 2.00 4 0 4 0
........................................................................TATGGCTTTTTATTACTATGTGA......................................................................................................... 23 1 2 2.00 4 4 0 0
.........................................................................ATGGCTTTTTATTCCTATGT........................................................................................................... 20 0 2 2.00 4 4 0 0
...............................................................................................................TGTAGGGATGGAAGCCATGAAA................................................................... 22 0 1 2.00 2 2 0 0
........................................................................TATGGCTTTTTATTCCTAAGTGA......................................................................................................... 23 1 2 1.50 3 3 0 0
......................................................................AATATGGCTTTTTATTCCTATGTGA......................................................................................................... 25 2 2 1.50 3 3 0 0
........................................................................TATGGCTTTTTTTTCCTATGTGA......................................................................................................... 23 1 2 1.50 3 3 0 0
........................................................................TATGGCTTTTTATTCCTATGGGA......................................................................................................... 23 1 2 1.50 3 3 0 0
........................................................................TATGGCTTTTTATTCCTAT............................................................................................................. 19 0 2 1.50 3 2 0 1
........................................................................TATAGCTTTTTATTCCTATGTGA......................................................................................................... 23 1 2 1.50 3 3 0 0
........................................................................TATGGCTTTTTATTCCTATGTGC......................................................................................................... 23 1 2 1.50 3 3 0 0
........................................................................TATGGCTTTTTCTTCCTATGTGGT........................................................................................................ 24 2 2 1.00 2 2 0 0
........................................................................TATGGCTTTTTATTCCTATG............................................................................................................ 20 0 2 1.00 2 2 0 0
.......................................................................TTATGGCTTTTTATTCCTATGTGT......................................................................................................... 24 1 1 1.00 1 1 0 0
........................................................................TATGGCTTTTTATTCCTATGTAT......................................................................................................... 23 2 3 1.00 3 3 0 0
...............................................................................................................TGTAGGGATGGAAGCCAT....................................................................... 18 0 1 1.00 1 1 0 0
.......................................................................ATATGGCTTTTAATTCCTATGTGA......................................................................................................... 24 2 3 1.00 3 3 0 0
......................................................................ATTATGGCTTTTCATTCCTATGTGA......................................................................................................... 25 2 2 1.00 2 2 0 0
.......................................................................ATATGGCTTTTTATTCCTATGTG.......................................................................................................... 23 1 2 1.00 2 2 0 0
........................................................................TCTGGCTTTTTATTCCTATGTGA......................................................................................................... 23 1 2 1.00 2 2 0 0
.......................................................................TTATGGCTTTTCATTCCTATGTGA......................................................................................................... 24 1 2 1.00 2 2 0 0
...............................................................................................................TGTAGGGATGGAAGCCATGA..................................................................... 20 0 1 1.00 1 0 1 0
........................................................................TATGGCTTTTTATTCCTATGCGA......................................................................................................... 23 1 2 1.00 2 2 0 0
........................................................................TATGGCTTTTTATTCCTATGTCAA........................................................................................................ 24 2 2 1.00 2 2 0 0
........................................................................TACGGCTTTTTATTCCTATGTGA......................................................................................................... 23 1 2 1.00 2 2 0 0
...............................................................................................................AGTAGGGATGGAAGCCATGAA.................................................................... 21 1 1 1.00 1 1 0 0
.........................................................................ATGGCTTTTTATTCATATGTGA......................................................................................................... 22 1 3 0.67 2 2 0 0
........................................................................TATGGCTTTTGATTCCTATGT........................................................................................................... 21 1 3 0.67 2 2 0 0
........................................................................TATGGCTTTTTTTTCCTATGTGAA........................................................................................................ 24 2 3 0.67 2 2 0 0
.........................................................................ATGGCTTTTTATTCCTCTGTGA......................................................................................................... 22 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATTCGTATGTGA......................................................................................................... 23 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATTCCTATGTA.......................................................................................................... 22 1 2 0.50 1 1 0 0
........................................................................TATGGCTTATTATTCCTATGTG.......................................................................................................... 22 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATCCCTATGT........................................................................................................... 21 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATTTCTATGTGA......................................................................................................... 23 1 2 0.50 1 1 0 0
........................................................................TGTGGCTTTTTATTCCTATGTGA......................................................................................................... 23 1 2 0.50 1 1 0 0
..........................................................................TGGCTTTTTATTCCTAAGTGA......................................................................................................... 21 1 2 0.50 1 1 0 0
.........................................................................ATGGCTTTTTATTACTATGTGA......................................................................................................... 22 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATTCATATGTGA......................................................................................................... 23 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATTCCTCTGTGA......................................................................................................... 23 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATACCTATGTGAA........................................................................................................ 24 2 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATTCCAATGTGA......................................................................................................... 23 1 2 0.50 1 1 0 0
........................................................................AATGGCTTTTTATTCCTATGTGA......................................................................................................... 23 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTCTATTCCTATGTGA......................................................................................................... 23 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTCTTACTATGTGA......................................................................................................... 23 2 4 0.50 2 2 0 0
.........................................................................ATAGCTTTTTATTCCTATGTGA......................................................................................................... 22 1 2 0.50 1 1 0 0
........................................................................TATGGCTATTTATTCCTATGTGA......................................................................................................... 23 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATTCCTATGTGG......................................................................................................... 23 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATTCCTATATGA......................................................................................................... 23 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATTACTATGTGAA........................................................................................................ 24 2 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATTCCTATTT........................................................................................................... 21 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATGCCTATGTGA......................................................................................................... 23 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATTCCTATGTGAAGT...................................................................................................... 26 3 2 0.50 1 1 0 0
........................................................................TATGGCTTTTCATTCCTATGTGATGGAA.................................................................................................... 28 3 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATTCCTATGGGT......................................................................................................... 23 2 2 0.50 1 1 0 0
........................................................................TAAGGCTTTTTATTCCTATGTGA......................................................................................................... 23 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATACCTATGTGA......................................................................................................... 23 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATTCCTATGTGAG........................................................................................................ 24 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATTCCTACGTGA......................................................................................................... 23 1 2 0.50 1 1 0 0
.........................................................................ATGGCTTTTTATTCCTATGTGAA........................................................................................................ 23 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATACCTATGT........................................................................................................... 21 1 2 0.50 1 1 0 0
........................................................................TATGGCTTTTTATCCCTATGTGA......................................................................................................... 23 1 2 0.50 1 1 0 0
.........................................................................ATGGCTTTTTATTCGTATGTGA......................................................................................................... 22 1 2 0.50 1 1 0 0
.......................................................................TTATGGCTTTTCATTCCTATG............................................................................................................ 21 1 2 0.50 1 1 0 0
.......................................................................ATATGGCTTTTAATTCCTATGTG.......................................................................................................... 23 2 3 0.33 1 1 0 0
..........................................................................TGGCTTTTTATTCCTATGTGTA........................................................................................................ 22 2 6 0.33 2 2 0 0
........................................................................TATGGCTTTTTACTCCTATGTGAA........................................................................................................ 24 2 3 0.33 1 1 0 0
......................................................................GATATGGCTTTTTATTCCTATGT........................................................................................................... 23 2 3 0.33 1 1 0 0
........................................................................TATGGCTTTTGATTCCTATGTG.......................................................................................................... 22 1 3 0.33 1 1 0 0
........................................................................TATGGCTTTTTATCCCTATGTGT......................................................................................................... 23 2 3 0.33 1 1 0 0
........................................................................CATGGCTTTTTATTCCTATGT........................................................................................................... 21 1 3 0.33 1 1 0 0
........................................................................TATAGCTTTTTCTTCCTATGTGA......................................................................................................... 23 2 3 0.33 1 1 0 0
.........................................................................ATGGCTTTTAATTCCTATGTG.......................................................................................................... 21 1 3 0.33 1 1 0 0
.........................................................................ATGGCTTTTAATTCCTATGT........................................................................................................... 20 1 3 0.33 1 1 0 0
........................................................................TATGGCTTTTAATTCCTATGTGAA........................................................................................................ 24 2 3 0.33 1 1 0 0
........................................................................TATGGCTTTTAATTCCTATGTG.......................................................................................................... 22 1 3 0.33 1 1 0 0
........................................................................TATGGCTTTTTATTCCTATGTGATT....................................................................................................... 25 1 3 0.33 1 1 0 0
........................................................................TGTGGCTTTTAATTCCTATGTGA......................................................................................................... 23 2 4 0.25 1 1 0 0
.............................................................................CTTTTTATTCCTATGTGAA........................................................................................................ 19 1 5 0.20 1 1 0 0
........................................................................TATGGCTTTTTCTTCCTATGTGAA........................................................................................................ 24 2 5 0.20 1 1 0 0
........................................................................TATGGCTTTTGATTCCTATGTAA......................................................................................................... 23 2 6 0.17 1 1 0 0
........................................................................TATGGCTTTTTATTTCTATGTGT......................................................................................................... 23 2 8 0.13 1 1 0 0
.............................................................................CTTTTTATTCCTATGTGAAT....................................................................................................... 20 2 20 0.05 1 1 0 0

Anti-sense strand reads

ACCTTTACCAAAACTTCAGCACACTTCTTTTATTCAAAATGTAGGCCGGTTCTATTTAAGTGAGATCACGAAATACCGAAAAATAAGGATACACTAGCATTATTTCAGAGTACATCCCTACCTTCGGTACTTTATGTAACACTTTTAAGTAGTTGATTCTTCCCCGGTAGTCTTATCTCTTGATCTCGGAGACCTTGCAC
***************************************************(((((....(((.((((((((((((.((((((((((((.............)))))))))))))))))))))))).)))...))))).....********************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:49 PM