ID:

rno-mir-134

 Coordinate:

chr6:133884547-133884619 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.1 -34.8 -34.8

Sense Strand Reads

ACTTTGAAAAGAGGTCATCTTCCAGAAGAGATGTTGGTGCCAGCACCATTCAGGGTGTGTGACTGGTTGACCAGAGGGGCGTGCACTTTGTTCACCCTGTGGGCCACCTAGTCACCAACCCTCGGCATCAATTCCACTAAAGAAGACTTTCCAGAGATCCTGCCAAGTTTGGG
******************************************...((....(((((..((((((((.((.(((.((((....(((...)))...)))).)))..)).))))))))..))))).)).......***************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP		 GSM1528817
Adult_testes
.........................................................TGTGACTGGTTGACCAGAGGGG.............................................................................................. 22 0 1 44.00 44 41 0 3
.........................................................TGTGACTGGTTGACCAGAGGGGA............................................................................................. 23 1 1 37.00 37 37 0 0
.........................................................TGTGACTGGTTGACCAGAGGGAA............................................................................................. 23 2 1 34.00 34 34 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGT............................................................................................. 23 1 1 27.00 27 27 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGAAT........................................................................................... 25 2 1 27.00 27 27 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGAT............................................................................................ 24 2 1 20.00 20 20 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGTAT........................................................................................... 25 2 1 19.00 19 19 0 0
.........................................................TGTGACTGGTTGACCAGAGGGTAT............................................................................................ 24 3 1 17.00 17 17 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGAA............................................................................................ 24 2 1 16.00 16 16 0 0
.........................................................TGTGACTGGTTGACCAGAGGGTAA............................................................................................ 24 3 1 16.00 16 16 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGTTT........................................................................................... 25 2 1 15.00 15 15 0 0
.........................................................TGTGACTGGTTGACCAGAGGGAAA............................................................................................ 24 3 2 11.00 22 22 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGTT............................................................................................ 24 2 1 10.00 10 10 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGTAA........................................................................................... 25 3 2 10.00 20 20 0 0
.........................................................TGTGACTGGTTGACCAGAGGGAT............................................................................................. 23 2 1 9.00 9 9 0 0
.........................................................TGTGACTGGTTGACCAGAGGGA.............................................................................................. 22 1 1 9.00 9 9 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGATT........................................................................................... 25 2 1 8.00 8 1 7 0
.........................................................TGTGACTGGTTGACCAGAGGGT.............................................................................................. 22 1 1 8.00 8 8 0 0
.........................................................TGTGACTGGTTGACCAGAGGGATT............................................................................................ 24 3 1 7.00 7 7 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGAAA........................................................................................... 25 3 2 7.00 14 14 0 0
................................................................................................CTGTGGGCCACCTAGTCACCAAT...................................................... 23 1 1 6.00 6 6 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGTA............................................................................................ 24 2 1 6.00 6 6 0 0
.........................................................TGTGACTGGTTGACCAGAGGGAAT............................................................................................ 24 3 4 6.00 24 24 0 0
.........................................................TGTGACTGGTTGACCAGAGGGTA............................................................................................. 23 2 1 5.00 5 5 0 0
..........................................................GTGACTGGTTGACCAGAGGGG.............................................................................................. 21 0 1 5.00 5 5 0 0
..........................................................GTGACTGGTTGACCAGAGGGGA............................................................................................. 22 1 1 5.00 5 5 0 0
.........................................................TGTGACTGGTTGACCAGAGGGATTT........................................................................................... 25 3 1 4.00 4 4 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGTTTT.......................................................................................... 26 3 1 4.00 4 4 0 0
.........................................................TGTGACTGGTTGACCAGAGGG............................................................................................... 21 0 1 3.00 3 3 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGCGT........................................................................................... 25 0 1 3.00 3 3 0 0
.........................................................TGTGACTGGTTGACCAGAGGGTTAT........................................................................................... 25 3 1 3.00 3 3 0 0
..........................................................GTGACTGGTTGACCAGAGGGGAGA........................................................................................... 24 2 1 3.00 3 3 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGATTT.......................................................................................... 26 3 1 3.00 3 3 0 0
................................................................................................CTGTGGGCCACCTAGTCACCA........................................................ 21 0 1 2.00 2 2 0 0
......................................................GAGTGTGACTGGTTGACCAGAGGGGA............................................................................................. 26 2 1 2.00 2 2 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGAGA........................................................................................... 25 2 1 2.00 2 2 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGCGTGC......................................................................................... 27 0 1 2.00 2 2 0 0
.........................................................TGTGACTGGTTGACCAGAGGA............................................................................................... 21 1 1 2.00 2 2 0 0
.........................................................TGTGACTGGTTGACCAGAGGGTATT........................................................................................... 25 3 1 2.00 2 2 0 0
.........................................................TGTGACTGGTTGACCAGAGGGAAGA........................................................................................... 25 3 1 2.00 2 2 0 0
................................................................................................CTGTGGGCCACCTAGTCACCAATT..................................................... 24 2 1 2.00 2 2 0 0
.................................................................................................TGTGGGCCACCTAGTCACCAAA...................................................... 22 1 1 2.00 2 2 0 0
..........................................................GTGACTGGTTGACCAGAGGGGTAT........................................................................................... 24 2 1 2.00 2 2 0 0
.........................................................TGTGACTGGTTGACCAGAGGTAA............................................................................................. 23 3 6 1.67 10 10 0 0
.........................................................TGTGACTGGTTGACCAGAGGGAAAT........................................................................................... 25 3 2 1.50 3 3 0 0
.........................................................TGTGACTGGTTGACCAGAGGGTTT............................................................................................ 24 3 4 1.50 6 6 0 0
.........................................................TGTGACTGGTTGACCAGAGGAA.............................................................................................. 22 2 4 1.25 5 5 0 0
.........................................................TGTGACTGGTTGACCAAAGGGGATT........................................................................................... 25 3 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGAAC........................................................................................... 25 3 1 1.00 1 1 0 0
........................................................GTGTGACTGGTTGACCAGAGGGTAA............................................................................................ 25 3 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGG................................................................................................ 20 0 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGTT.............................................................................................. 22 2 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGAACAGAGGGGA............................................................................................. 23 2 1 1.00 1 1 0 0
..........................................................GTGACTGGTTGACCAGAGGGAT............................................................................................. 22 2 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGAAAG.......................................................................................... 26 3 1 1.00 1 1 0 0
........................................................GTGTGACTGGTTGACCAGAGGTAA............................................................................................. 24 3 2 1.00 2 2 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGATTA.......................................................................................... 26 3 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGTG............................................................................................. 23 2 1 1.00 1 1 0 0
..........................................................GTGAATGGTTGACCAGAGGGG.............................................................................................. 21 1 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGTGAAT........................................................................................... 25 3 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGCGTAT......................................................................................... 27 2 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGAGA............................................................................................. 23 2 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGAC............................................................................................. 23 1 1 1.00 1 1 0 0
.................................................................................................TGTGGGCCACCTAGTCACCAACT..................................................... 23 1 1 1.00 1 1 0 0
..........................................................GTGACTGGTTGACCAGAGGGGTAA........................................................................................... 24 3 2 1.00 2 2 0 0
........................................................GTGTGACTGGTTGACCAGAGGGATT............................................................................................ 25 3 1 1.00 1 1 0 0
........................................................ATGTGACTGGTTGACCAGAGGGGA............................................................................................. 24 2 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTAACCAGAGGGGTAT........................................................................................... 25 3 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCCGAGGGGT............................................................................................. 23 2 1 1.00 1 0 0 1
..........................................................GTGACTGGTTGACCAGAGGGGT............................................................................................. 22 1 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGAAG............................................................................................ 24 2 1 1.00 1 1 0 0
..........................................................GTGACTGGTTGACCAGAGGGTA............................................................................................. 22 2 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGCAA............................................................................................ 24 3 2 1.00 2 2 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGATA........................................................................................... 25 3 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGTATT.......................................................................................... 26 3 1 1.00 1 1 0 0
................................................................................................CTGTGGGCCACCTAGTCACCAAAAAT................................................... 26 3 1 1.00 1 1 0 0
........................................................ATGTGACTGGTTGACCAGAGGGA.............................................................................................. 23 2 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGAATA.......................................................................................... 26 3 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGCGTGCA........................................................................................ 28 0 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACGAGAGGGGAAT........................................................................................... 25 3 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGT............................................................................................... 21 1 1 1.00 1 1 0 0
................................................................................................CTGTGGGCCACCTAGTCACCAAA...................................................... 23 1 1 1.00 1 1 0 0
..........................................................GTGACTGGTTGACCAGAGGGGAAT........................................................................................... 24 2 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGCA............................................................................................ 24 1 1 1.00 1 1 0 0
..........................................................GTGACTGGTTGACCAGAGGGGCAT........................................................................................... 24 1 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGCA............................................................................................. 23 2 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGAAG........................................................................................... 25 3 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGTTA........................................................................................... 25 3 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGAG............................................................................................ 24 1 1 1.00 1 1 0 0
........................................................GTGTGACTGGTTGACCAGAGGG............................................................................................... 22 0 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGTTA............................................................................................ 24 3 2 1.00 2 2 0 0
.........................................................TGTGACCGGTTGACCAGAGGGGTAT........................................................................................... 25 3 1 1.00 1 1 0 0
................................................................................................CTGTGGGCCACCTAGTCACCAAGT..................................................... 24 2 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGAACAGAGGGG.............................................................................................. 22 1 1 1.00 1 1 0 0
..........................................................GTGACTGGTTGACCAGAGGGGTA............................................................................................ 23 2 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGTT............................................................................................. 23 2 1 1.00 1 1 0 0
........................................................GTGTGACTGGTTGACCAGAGGGA.............................................................................................. 23 1 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGGCGTG.......................................................................................... 26 0 1 1.00 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGAATT........................................................................................... 25 3 2 1.00 2 2 0 0
.........................................................TGTGACTGGTTGACCAGAGGGAGT............................................................................................ 24 3 5 0.80 4 4 0 0
.........................................................TGTGACTGGTTGACCAGAGGGAGA............................................................................................ 24 3 3 0.67 2 2 0 0
.........................................................TGTGACTGGTTGACCAGAGGGATA............................................................................................ 24 3 3 0.67 2 2 0 0
..........................................................GTGACTGGTTGACCAGAGGGTAA............................................................................................ 23 3 2 0.50 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGGTTTT........................................................................................... 25 3 2 0.50 1 1 0 0
..........................................................GTGCCTGGTTGACCAGAGGGGTAT........................................................................................... 24 3 2 0.50 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGTA.............................................................................................. 22 2 2 0.50 1 1 0 0
.........................................................TGTGACTGGTTGACCAGAGGTAT............................................................................................. 23 3 7 0.43 3 3 0 0
.........................................................TGTGACTGGTTGACCAGAGGTTA............................................................................................. 23 3 5 0.40 2 2 0 0
..........................................................GTGACTGGTTGACCAGAGGGAA............................................................................................. 22 2 3 0.33 1 1 0 0
................................................................GGTTGACCAGAGGGG.............................................................................................. 15 0 4 0.25 1 1 0 0
................................................................................................CTGTGGGCCACCTAGTCACCATTA..................................................... 24 3 6 0.17 1 1 0 0
.........................................................TGTGACTGGTTGACCAGATT................................................................................................ 20 2 10 0.10 1 1 0 0
........................................................ATGTGACTGGTTGCCCAGAGGGA.............................................................................................. 23 3 10 0.10 1 1 0 0
..........................................................GTGACTGGTTGACCAGAGGGAAT............................................................................................ 23 3 10 0.10 1 1 0 0
..........................................................GTGACTGGTTGACCAGAGGTTA............................................................................................. 22 3 12 0.08 1 1 0 0

Anti-sense strand reads

TGAAACTTTTCTCCAGTAGAAGGTCTTCTCTACAACCACGGTCGTGGTAAGTCCCACACACTGACCAACTGGTCTCCCCGCACGTGAAACAAGTGGGACACCCGGTGGATCAGTGGTTGGGAGCCGTAGTTAAGGTGATTTCTTCTGAAAGGTCTCTAGGACGGTTCAAACCC
*****************************************...((....(((((..((((((((.((.(((.((((....(((...)))...)))).)))..)).))))))))..))))).)).......****************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:48 PM