ID:

rno-mir-133a

 Coordinate:

chr18:2052478-2052564 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.8
mature
  1. chr18:2052491-2052513 -
  2. chr3:175779611-175779633 +
star
  1. chr18:2052529-2052550 -
  2. chr3:175779574-175779595 +

Sense Strand Reads

TATTTCTACAAATGAGCATAGAACTTGTTTGGATCCTAAACCAGCAGCGGCAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCGCCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTATGCATTGATTGCCACAGGACAGCCAGCGCTCTGTGAATGTGAGTTACATCTCAACTGA
*************************************************.((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...))))))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
.....................................................................................................TTTGGTCCCCTTCAACCAGCTGT............................................................... 23 0 2 43.00 86 84 2 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGT............................................................... 22 0 2 28.00 56 50 4 2
......................................................................................................TTGGTCCCCTTCAACCAGCTGTAA............................................................. 24 1 2 17.00 34 34 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGTAT............................................................. 24 1 2 9.00 18 18 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGTT.............................................................. 23 1 2 8.00 16 16 0 0
.....................................................................................................TTTGGTCCCCTTCAACCAGCTGTT.............................................................. 24 1 2 7.00 14 14 0 0
.....................................................................................................TTTGGTCCCCTTCAACCAGCTGTA.............................................................. 24 0 2 5.50 11 5 0 6
......................................................................................................TTGGTCCCCTTCAACCAGCTGA............................................................... 22 1 2 5.00 10 10 0 0
.....................................................................................................TTTGGTCCCCTTCAACCAGCTGA............................................................... 23 1 2 4.00 8 8 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGTTAT............................................................ 25 3 2 4.00 8 8 0 0
.....................................................................................................TTTGGTCCCCTTCAACCAGCTGTAA............................................................. 25 1 2 4.00 8 8 0 0
.....................................................................................................TTTGGTCCCCTTCAACCAGCTG................................................................ 22 0 2 3.50 7 6 1 0
.....................................................................................................TTTGGTCCCCTTCAACCAGCTGTTT............................................................. 25 2 2 3.00 6 6 0 0
.....................................................................................................TTTGGTCCCCTTCAACCAGCTGAA.............................................................. 24 1 2 2.50 5 5 0 0
.....................................................................................................TTTGGTCCCCTTCAACCAGCTGAT.............................................................. 24 2 2 2.50 5 5 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGTTT............................................................. 24 2 2 2.50 5 5 0 0
.....................................................................................................TTTGGTCCCCTTCAACCAGCTGTAT............................................................. 25 1 2 2.50 5 5 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTG................................................................ 21 0 2 1.50 3 3 0 0
................................................................AGCTGGTAAAATGGAACCAAAT..................................................................................................... 22 0 2 1.50 3 2 1 0
.......................................................................................................TGGTCCCCTTCAACCAGCTGT............................................................... 21 0 2 1.50 3 1 2 0
.......................................................................................................TGGTCCCCTTCAACCAGCTGTAT............................................................. 23 1 2 1.50 3 3 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGTTTT............................................................ 25 3 2 1.50 3 3 0 0
.................................................................GCTGGTAAAATGGAACCAAAT..................................................................................................... 21 0 2 1.50 3 3 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGTAAT............................................................ 25 2 2 1.50 3 3 0 0
....................................................................................................ATTTGGTCCCCTTCAACCAGCTGT............................................................... 24 0 2 1.00 2 1 1 0
.................................................................................................AAAATTTGGTCCCCTTCAACCAGCTGT............................................................... 27 3 2 1.00 2 2 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGAAT............................................................. 24 2 2 1.00 2 2 0 0
.....................................................................................................TTTGGTCCCCTTCAACCAGCTGTTTT............................................................ 26 3 2 1.00 2 2 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGAAA............................................................. 24 2 2 1.00 2 2 0 0
.....................................................................................................ATTGGTCCCCTTCAACCAGCTGT............................................................... 23 1 2 1.00 2 1 1 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGTA.............................................................. 23 0 2 1.00 2 2 0 0
....................................................................................................ATTTGGTCCCCTTCAACCAGCTG................................................................ 23 0 2 1.00 2 1 1 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGTAAA............................................................ 25 2 2 1.00 2 2 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGTTAA............................................................ 25 3 2 1.00 2 2 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGTTG............................................................. 24 1 2 1.00 2 2 0 0
.....................................................................................................ATTGGTCCCCTTCAACCAGCTGTA.............................................................. 24 1 2 0.50 1 0 1 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGGAT............................................................. 24 2 2 0.50 1 1 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGAAAA............................................................ 25 3 2 0.50 1 1 0 0
.....................................................................................................TTTGGTCCCCTTCACCCAGCTGA............................................................... 23 2 2 0.50 1 1 0 0
......................................................................................................TTGGTCCACTTCAACCAGCTG................................................................ 21 1 2 0.50 1 1 0 0
......................................................................................................TTGGTCCCCTTCACCCAGCTGA............................................................... 22 2 2 0.50 1 1 0 0
.....................................................................................................TTTGGTCTCCTTCAACCAGCTGT............................................................... 23 1 2 0.50 1 1 0 0
......................................................................................................TTGGTCCCCTTCATCCAGCTGT............................................................... 22 1 2 0.50 1 1 0 0
......................................................................................................TTGGTCCCATTCAACCAGCTGT............................................................... 22 1 2 0.50 1 1 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCCGTAT............................................................. 24 2 2 0.50 1 1 0 0
.....................................................................................................TTTGGTCCCCTTCACCCAGCTGTAA............................................................. 25 2 2 0.50 1 1 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGTTGT............................................................ 25 2 2 0.50 1 1 0 0
.....................................................................................................TTTGCTCCCCTTCAACCAGCTGAA.............................................................. 24 2 2 0.50 1 1 0 0
......................................................................................................TTGGTCACCTTCAACTAGCTGT............................................................... 22 2 2 0.50 1 1 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGAT.............................................................. 23 2 2 0.50 1 1 0 0
......................................................................................................CTGGTCCCCTTCAACCAGCTGTAA............................................................. 24 2 2 0.50 1 1 0 0
....................................................................................................ACTTGGTCCCCTTCAACCAGCTG................................................................ 23 1 2 0.50 1 0 1 0
.....................................................................................................CTTGGTCCCCTTCAACCAGCTGA............................................................... 23 2 2 0.50 1 1 0 0
.....................................................................................................TTTGGTCCACTTCAACCAGCTGTA.............................................................. 24 1 2 0.50 1 0 0 1
.....................................................................................................TTCGGTCCCCTTCCACCAGCTGT............................................................... 23 2 2 0.50 1 1 0 0
......................................................................................................ATGGTCCCCTTCAACCAGCTGTAT............................................................. 24 2 2 0.50 1 1 0 0
.....................................................................................................TTTGGTCCCCTTCCACCAGCTGTA.............................................................. 24 1 2 0.50 1 1 0 0
.....................................................................................................TTTGGTCCCCTTCAACCAGCTGTTAT............................................................ 26 3 2 0.50 1 1 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGGT.............................................................. 23 2 2 0.50 1 0 1 0
......................................................................................................TTGGTCCCCTTCAAACAGCTGTAA............................................................. 24 2 2 0.50 1 1 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGTAC............................................................. 24 1 2 0.50 1 1 0 0
.....................................................................................................TTTGGTCCCCCTCAACCAGCTGTTT............................................................. 25 3 2 0.50 1 1 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGTGA............................................................. 24 2 2 0.50 1 1 0 0
......................................................................................................TTGGTCCCCCTCAACCAGCTGTA.............................................................. 23 1 2 0.50 1 1 0 0
.....................................................................................................TTTGGGCCCCTTCAACCAGCTGT............................................................... 23 1 2 0.50 1 1 0 0
.................................................................................................GGGGGTTGGTCCCCTTCAACCAGCTGT............................................................... 27 3 2 0.50 1 1 0 0
......................................................................................................TTGGTCCCCTTCAACCAGCTGTTA............................................................. 24 2 2 0.50 1 1 0 0
.......................................................................................................TGGTCCCCTTCAACCAGCTGTT.............................................................. 22 1 2 0.50 1 1 0 0
.......................................................................................................TGGTCCCCTTCAACCAGCTGTTA............................................................. 23 2 2 0.50 1 1 0 0
.....................................................................................................TTTGGACCCCTTCAACCAGCTGTTT............................................................. 25 3 3 0.33 1 1 0 0
.......................................................................................................TGGTCCCCTTCAACCAGCTGTTAA............................................................ 24 3 3 0.33 1 1 0 0
.....................................................................................................TTTGGTCCCCTTCAACCAGC.................................................................. 20 0 3 0.33 1 1 0 0
.....................................................................................................TTTGGTCCCCTTCAACCAGCT................................................................. 21 0 3 0.33 1 1 0 0
.....................................................................................................TTTGGTCCCCTTCAACCAGCTAT............................................................... 23 1 3 0.33 1 1 0 0
.....................................................................................................TTTAGTCCCCTTCAACCAGCTGAAA............................................................. 25 3 4 0.25 1 1 0 0

Anti-sense strand reads

ATAAAGATGTTTACTCGTATCTTGAACAAACCTAGGATTTGGTCGTCGCCGTTACGAAACGATTTCGACCATTTTACCTTGGTTTAGCGGAGAAGTTACCTAAACCAGGGGAAGTTGGTCGACATCGATACGTAACTAACGGTGTCCTGTCGGTCGCGAGACACTTACACTCAATGTAGAGTTGACT
************************************************.((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...))))))...************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:39 PM