ID:

rno-mir-130b

 Coordinate:

chr11:88129773-88129854 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.1 -38.9 -38.9

Sense Strand Reads

CACCCCAGCCACCCCCTCCCCATGCCCCGCCCTACCCCTTGAGACTGACTGGCTTGCTGGACACTCTTTCCCTGTTGCACTACTGTGGGCCTCTGGGAAGCAGTGCAATGATGAAAGGGCATCCGTCAGGCCAGCTAAGGAACCTGAAGTACAAAAGGGTCAGTGCTGGCATCCGGTTCATG
***********************************************.((((((((.((((..(((((((..(((((((((.((.....((...))..)).)))))))))..)))))))..)))).))))))))...********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
....................................................................................................CAGTGCAATGATGAAAGGGCAT............................................................ 22 0 1 313.00 313 307 5 1
....................................................................................................CAGTGCAATGATGAAAGGGCATT........................................................... 23 1 1 55.00 55 55 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATAA.......................................................... 24 2 1 35.00 35 35 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCAA............................................................ 22 1 1 32.00 32 32 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATA........................................................... 23 1 1 31.00 31 31 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCAAT........................................................... 23 2 1 26.00 26 26 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATTT.......................................................... 24 2 2 21.00 42 41 1 0
....................................................................................................CAGTGCAATGATGAAAGGGCATAT.......................................................... 24 2 1 19.00 19 19 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATTA.......................................................... 24 2 1 19.00 19 19 0 0
.....................................................................................................AGTGCAATGATGAAAGGGCAT............................................................ 21 0 1 14.00 14 14 0 0
....................................................................................................CAGTGCAATGATAAAAGGGCAT............................................................ 22 1 2 12.50 25 25 0 0
..............................................................ACTCTTTCCCTGTTGCACTACT.................................................................................................. 22 0 1 9.00 9 9 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCAAA........................................................... 23 2 1 8.00 8 8 0 0
....................................................................................................CAGTGCAATGATAAAAGGGCATT........................................................... 23 2 2 6.50 13 13 0 0
.....................................................................................................AGTGCAATGATGAAAGGGCATA........................................................... 22 1 1 6.00 6 6 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATTTAT........................................................ 26 3 1 6.00 6 6 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATTAT......................................................... 25 3 2 5.50 11 11 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATTAA......................................................... 25 3 2 5.50 11 11 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCA............................................................. 21 0 1 5.00 5 5 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATAAA......................................................... 25 3 1 5.00 5 5 0 0
....................................................................................................CAGTGCAATGTTGAAAGGGCAT............................................................ 22 1 2 4.50 9 9 0 0
.....................................................................................................AGTGCAATGATGAAAGGGCATT........................................................... 22 1 1 4.00 4 4 0 0
...................................................................................................ACAGTGCAATGATGAAAGGGCAT............................................................ 23 1 1 4.00 4 4 0 0
.....................................................................................................AGTGCAATGATGAAAGGGCATTA.......................................................... 23 2 1 4.00 4 4 0 0
....................................................................................................CAGTGCAATGCTGAAAGGGCAT............................................................ 22 1 1 4.00 4 4 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATGT.......................................................... 24 2 1 4.00 4 4 0 0
....................................................................................................CAGTGCAATGATGCAAGGGCAT............................................................ 22 1 1 3.00 3 3 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATGA.......................................................... 24 2 1 3.00 3 3 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCAG............................................................ 22 1 1 3.00 3 3 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATAAT......................................................... 25 3 2 3.00 6 6 0 0
....................................................................................................CAGTGCAATGATGACAGGGCAT............................................................ 22 1 1 3.00 3 3 0 0
................................................................................................AAAACAGTGCAATGATGAAAGGGCAT............................................................ 26 2 1 3.00 3 3 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCAAAA.......................................................... 24 3 3 2.67 8 8 0 0
....................................................................................................CAGTGCAATGATAAAAGGGCATAA.......................................................... 24 3 2 2.50 5 5 0 0
....................................................................................................CAGTGCAATGTTGAAAGGGCATT........................................................... 23 2 2 2.50 5 5 0 0
....................................................................................................CAGTGCAATGATGTAAGGGCAT............................................................ 22 1 1 2.00 2 2 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATTAG......................................................... 25 2 1 2.00 2 2 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATAGA......................................................... 25 3 1 2.00 2 2 0 0
...................................................................................................ACAGTGCAATGATGAAAGGGCA............................................................. 22 1 1 2.00 2 2 0 0
....................................................................................................CATTGCAATGATGAAAGGGCAT............................................................ 22 1 1 2.00 2 2 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATTTA......................................................... 25 3 2 1.50 3 3 0 0
.....................................................................................................AGTGCAATGTTGAAAGGGCAT............................................................ 21 1 2 1.50 3 3 0 0
....................................................................................................CAGTGCAATGATAAAAGGGCATTA.......................................................... 24 3 3 1.33 4 4 0 0
.....................................................................................................AGTGCAATGATGAAAGGGCATTT.......................................................... 23 2 3 1.33 4 4 0 0
....................................................................................................CAGTGCAATGATGACAGGGCATA........................................................... 23 2 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATTAAT........................................................ 26 3 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGTAA............................................................ 22 2 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCAATA.......................................................... 24 3 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATTAC......................................................... 25 3 2 1.00 2 2 0 0
.....................................................................................................AGTGCAATGATGAAAGGTC.............................................................. 19 1 1 1.00 1 1 0 0
....................................................................................................TAGTGCAATGATGAAAGGGCAT............................................................ 22 1 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATACAAGGGCAT............................................................ 22 2 2 1.00 2 2 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATTGA......................................................... 25 3 2 1.00 2 2 0 0
.....................................................................................................AGTGCAATGATGAAAGGGCATAT.......................................................... 23 2 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGACATT........................................................... 23 2 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCACT........................................................... 23 2 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCAGA........................................................... 23 2 1 1.00 1 1 0 0
..............................................................ACTCTTTCCCTGTTGCACTAAA.................................................................................................. 22 2 1 1.00 1 1 0 0
.....................................................................................................AGTGCAATGATGAAAGGGCAA............................................................ 21 1 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAACGGCCT............................................................ 22 2 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATTAGT........................................................ 26 2 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCAC............................................................ 22 1 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGCCAT............................................................ 22 1 1 1.00 1 1 0 0
....................................................................................................AAGTGCAATGATGAAAGGGCATT........................................................... 23 2 1 1.00 1 1 0 0
....................................................................................................CAGTACAATGATGAAAGGGCAT............................................................ 22 1 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCAAGT.......................................................... 24 3 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATAATT........................................................ 26 3 1 1.00 1 1 0 0
...................................................................................................ACAGTGCAATGATAAAAGGGCATTC.......................................................... 25 3 1 1.00 1 1 0 0
................................................................................................AAAACAGTGCAATGCTGAAAGGGCAT............................................................ 26 3 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATGAT......................................................... 25 3 1 1.00 1 1 0 0
.....................................................................................................AGTGCAATGATGAAAGGGCAAT........................................................... 22 2 2 1.00 2 2 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATAAC......................................................... 25 3 1 1.00 1 1 0 0
.....................................................................................................AGTGCAATGATGAAATGGCAT............................................................ 21 1 1 1.00 1 1 0 0
....................................................................................................CACTGCAATGATGAAAGGGCAT............................................................ 22 1 1 1.00 1 1 0 0
.....................................................................................................AGTGCAATGATGAAAGGGC.............................................................. 19 0 1 1.00 1 1 0 0
...............................................................CTCTTTCCCTGTTGCACTACTG................................................................................................. 22 0 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCAAG........................................................... 23 2 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGG................................................................ 18 0 1 1.00 1 0 1 0
.....................................................................................................AGTGCAATGATGAAAGGGCATAA.......................................................... 23 2 1 1.00 1 1 0 0
....................................................................................................CAGCGCAATGATGACAGGGCAT............................................................ 22 2 1 1.00 1 1 0 0
............................................................ACACTCTTTCCCTGTTGCACT..................................................................................................... 21 0 1 1.00 1 1 0 0
...................................................................................................ACAGTGCAATGATGAAAGGGCATTA.......................................................... 25 3 2 1.00 2 2 0 0
....................................................................................................CAGTGCAATGCTGAAAGGGCATT........................................................... 23 2 2 1.00 2 2 0 0
....................................................................................................CAGTGCAATGATAAAAGGGCATA........................................................... 23 2 2 1.00 2 2 0 0
................................................................................................AATCCAGTGCAATGATGAAAGGGCAT............................................................ 26 3 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGTA............................................................. 21 1 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATTAGA........................................................ 26 3 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCTT............................................................ 22 1 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATAG.......................................................... 24 2 1 1.00 1 1 0 0
....................................................................................................CAGTGCAATGATAAAAGGGCATTT.......................................................... 24 3 4 0.75 3 3 0 0
....................................................................................................CAGTGCAATGATAAAAGGGCAA............................................................ 22 2 3 0.67 2 2 0 0
....................................................................................................CAGTGCAATGATGCAAGGGCATTT.......................................................... 24 3 3 0.67 2 2 0 0
....................................................................................................CAGTGCAATGATAAAAGGGCATAT.......................................................... 24 3 6 0.67 4 4 0 0
......................................................................................................GTGCAATGATAAAAGGGCAT............................................................ 20 1 2 0.50 1 1 0 0
...................................................................................................GCAGTGCAATGTTGAAAGGGCCT............................................................ 23 2 2 0.50 1 1 0 0
....................................................................................................CAGTGCAATGATAAAAGGGC.............................................................. 20 1 2 0.50 1 1 0 0
......................................................................................................GTGCAATGATGAAAGGGCATAA.......................................................... 22 2 2 0.50 1 1 0 0
....................................................................................................CAGTGCAATGATAAAAGGGCAAT........................................................... 23 3 8 0.50 4 4 0 0
...................................................................................................ACAGTGCAATGTTGAAAGGGCAT............................................................ 23 2 2 0.50 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCAAAG.......................................................... 24 3 4 0.50 2 2 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCAATT.......................................................... 24 3 2 0.50 1 1 0 0
...................................................................................................ACAGTGCAAAGATGAAAGGGCAT............................................................ 23 2 2 0.50 1 1 0 0
....................................................................................................TAGTGCAATGATGAAAGGGCATTA.......................................................... 24 3 2 0.50 1 1 0 0
....................................................................................................CAGTGCAATGATAAAAGGGCA............................................................. 21 1 2 0.50 1 1 0 0
....................................................................................................CAGTGCAATGTTGAAAGGGCA............................................................. 21 1 2 0.50 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATATT......................................................... 25 3 3 0.33 1 1 0 0
....................................................................................................CAGTTCAATGATGAAAGGGCAA............................................................ 22 2 3 0.33 1 1 0 0
....................................................................................................CACTGCAATGATGCAAGGGCATTC.......................................................... 24 3 3 0.33 1 1 0 0
.....................................................................................................AGTGCAATGATAAAAGGGCATT........................................................... 22 2 3 0.33 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCATTTTT........................................................ 26 3 3 0.33 1 1 0 0
.....................................................................................................AGTGCAATGTTGAAAGGGCATT........................................................... 22 2 3 0.33 1 1 0 0
....................................................................................................CAGTGCAATGTTGAAAGGGCATTA.......................................................... 24 3 6 0.33 2 2 0 0
....................................................................................................CAGTGCAATGATAAAAGGTCAT............................................................ 22 2 3 0.33 1 1 0 0
....................................................................................................CAGTGCAATGATAAAAGGGCACT........................................................... 23 3 3 0.33 1 1 0 0
....................................................................................................CAGTGCAATGTTGAAAGGGCATA........................................................... 23 2 3 0.33 1 1 0 0
....................................................................................................CAGTGCACTGATGAAAGGGCATTA.......................................................... 24 3 3 0.33 1 1 0 0
....................................................................................................CAGTGCAATGTTGAAAGGGCAA............................................................ 22 2 3 0.33 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCAAAT.......................................................... 24 3 3 0.33 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCACTT.......................................................... 24 3 3 0.33 1 1 0 0
................................................................................................AAAACAGTGCAATGATGAAAGTGCAT............................................................ 26 3 3 0.33 1 1 0 0
....................................................................................................CAGTGCAATGATGCAAGGGCAAT........................................................... 23 3 4 0.25 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGCGCATTA.......................................................... 24 3 4 0.25 1 1 0 0
.....................................................................................................AGTGCAATGATGAAAGGGCATTAT......................................................... 24 3 4 0.25 1 1 0 0
....................................................................................................CAGTGGAATGATAAAAGGGCAT............................................................ 22 2 4 0.25 1 1 0 0
...........................................................................................................ATGATGAAAGGGCAT............................................................ 15 0 9 0.22 2 2 0 0
....................................................................................................CAGTGCAGTGATGAAAGGGCATGT.......................................................... 24 3 5 0.20 1 1 0 0
......................................................................................................GTGCAATGATGAACGGGCATAA.......................................................... 22 3 5 0.20 1 1 0 0
....................................................................................................CAGTGCAATGAAGAAAGGGCATTT.......................................................... 24 3 5 0.20 1 1 0 0
....................................................................................................AAGTGCAATGATGAAAGGGCATTT.......................................................... 24 3 6 0.17 1 1 0 0
....................................................................................................CAGTGCAATGTTGAGAGGGCATT........................................................... 23 3 6 0.17 1 1 0 0
......................................................................................................GTGCAATGTTGAAAGGGCATA........................................................... 21 2 7 0.14 1 1 0 0
....................................................................................................CAGTGCAATGTTGAAAGGGCACA........................................................... 23 3 7 0.14 1 1 0 0
....................................................................................................CAGTGCAATGATAAAAGGGCAAA........................................................... 23 3 9 0.11 1 1 0 0
....................................................................................................CAGTGCAAAGATGAAAGGGCATAT.......................................................... 24 3 10 0.10 1 1 0 0
....................................................................................................CAGTGCAATGTTGTAAGGGCATT........................................................... 23 3 10 0.10 1 1 0 0
....................................................................................................CAGTGCAATGATGAAAGGGCAAGA.......................................................... 24 3 13 0.08 1 1 0 0

Anti-sense strand reads

GTGGGGTCGGTGGGGGAGGGGTACGGGGCGGGATGGGGAACTCTGACTGACCGAACGACCTGTGAGAAAGGGACAACGTGATGACACCCGGAGACCCTTCGTCACGTTACTACTTTCCCGTAGGCAGTCCGGTCGATTCCTTGGACTTCATGTTTTCCCAGTCACGACCGTAGGCCAAGTAC
*********************************************.((((((((.((((..(((((((..(((((((((.((.....((...))..)).)))))))))..)))))))..)))).))))))))...*********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528818
Adult_testes_Mili_IP
...........................GCGGGATGGGGAGCGCT.......................................................................................................................................... 17 2 20 0.05 1 1

Generated: 04/30/2015 at 05:34 PM