ID:

rno-mir-1306

 Coordinate:

chr11:86857633-86857705 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.1 -30.0 -29.9

Sense Strand Reads

AGCAATGATGGAGAACCGAGCTTGCCCCTTCCAAGTGCTGCCCCATGAACAGTCTCCACCACCTCCCCTGCAAACGTCCAGTGATGCAGAGGTAATGGACGTTGGCTCTGGTGGTGATGGACAGTCCGAACCTCCTGCCGACGACCCATTCAACTTCTACGGAGCTTCTCTTC
*******************************************..((.((.((((.(((((((......((.((((((((...((......))..)))))))).))...)))))))..)))).)).))......*************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes
..........................................................CCACCTCCCCTGCAAACGTCCA............................................................................................. 22 0 1 53.00 53 50 3
..........................................................CCACCTCCCCTGCAAACGTCCAT............................................................................................ 23 1 1 11.00 11 11 0
.................................................................................................GACGTTGGCTCTGGTGGTGATG...................................................... 22 0 1 7.00 7 7 0
..........................................................CCACCTCCCCTGCAAACGTCCAA............................................................................................ 23 1 1 7.00 7 7 0
..........................................................CCACCTCCCCTGCAAACGTCC.............................................................................................. 21 0 1 7.00 7 6 1
........................................................AACCACCTCCCCTGCAAACGTCCAT............................................................................................ 25 2 1 5.00 5 5 0
..........................................................CCACCTCCCCTGCAAACGTCCAAT........................................................................................... 24 1 1 4.00 4 4 0
..................................................................................................ACGTTGGCTCTGGTGGTGATGT..................................................... 22 1 1 3.00 3 3 0
...................................................................................................CGTTGGCTCTGGTGGTGATGT..................................................... 21 1 1 3.00 3 3 0
.................................................................................................GACGTTGGCTCTGGTGGTGATAT..................................................... 23 2 1 3.00 3 3 0
..................................................................................................ACGTTGGCTCTGGTGGTGATGAA.................................................... 23 1 1 3.00 3 3 0
.................................................................................................GACGTTGGCTCTGGTGGTGATGT..................................................... 23 1 1 3.00 3 3 0
..................................................................................................ACGTTGGCTCTGGTGGTGATGTAT................................................... 24 2 1 3.00 3 3 0
..........................................................CCACCTCCCCTGCAAACGTCCAAAT.......................................................................................... 25 3 1 2.00 2 2 0
..........................................................CCACCTCCCCTGCAAACGTC............................................................................................... 20 0 1 2.00 2 0 2
...........................................................CACCTCCCCTGCAAACGTCC.............................................................................................. 20 0 1 2.00 2 2 0
..........................................................CCACCTCCCCTGCAAACGTCCAGA........................................................................................... 24 1 1 2.00 2 2 0
...........................................................CACCTCCCCTGCAAACGTCCA............................................................................................. 21 0 1 2.00 2 2 0
.................................................................................................GACGTTGGCTCTGGTGGTGATA...................................................... 22 1 1 2.00 2 2 0
.................................................................................................GACGTTGGCTCTGGTGGTGA........................................................ 20 0 1 2.00 2 2 0
..................................................................................................ACGTTGGCTCTGGTGGTGATGTAAA.................................................. 25 2 1 2.00 2 2 0
.................................................................................................GACGTTGGCTCTGGTGGTGATGA..................................................... 23 1 1 1.00 1 1 0
..................................................................................................ACGTTGGCTCTGGTGGTGATGTAA................................................... 24 2 1 1.00 1 1 0
..........................................................CCACCTCCCCTGCAAACGTCCAAC........................................................................................... 24 2 1 1.00 1 1 0
..................................................................................................ACGTTGGCTCTGGTGGTGATGAAA................................................... 24 2 1 1.00 1 1 0
.................................................................................................GACGTTGGCTCTGGTGGTGAT....................................................... 21 0 1 1.00 1 1 0
..................................................................................................ACGTTGGCTCTGGTGGTGATGCAG................................................... 24 2 1 1.00 1 1 0
.........................................................ACCACCTCCCCTGCAAACGTCCAT............................................................................................ 24 1 1 1.00 1 0 1
.................................................................................................GACGTTGGCTCTGGTGGTGATTTT.................................................... 24 3 2 1.00 2 2 0
..........................................................CCACCTCCCCTGCACACGTCCA............................................................................................. 22 1 1 1.00 1 1 0
.........................................................ACCACCTCCCCTGCAAACGTCC.............................................................................................. 22 0 1 1.00 1 0 1
..........................................................CCACCTCCCCTGCAAACGTACA............................................................................................. 22 1 1 1.00 1 1 0
..........................................................CCACCTCCCCTGCAAACGT................................................................................................ 19 0 1 1.00 1 1 0
..........................................................CCACCTCCCCTCCAAACGTCCA............................................................................................. 22 1 1 1.00 1 1 0
.............................................................CCTCCCCTGCAAACGTCCA............................................................................................. 19 0 1 1.00 1 1 0
..........................................................CCACCTCCCCTGCAAACGCCCAT............................................................................................ 23 2 1 1.00 1 1 0
..................................................................................................ACGTTGGCTCTGGTGGGGATGT..................................................... 22 2 1 1.00 1 1 0
.................................................................................................GACGTTGGCTCTGGTGGTGATGTAAA.................................................. 26 2 1 1.00 1 1 0
..........................................................CCACCTCCCCTGCCAACGTCCA............................................................................................. 22 1 1 1.00 1 1 0
.........................................................ACCACCTCCCCTGCAAACGTC............................................................................................... 21 0 1 1.00 1 0 1
..................................................................................................ACGTTGGCTCTGGTGGTGATTT..................................................... 22 2 1 1.00 1 1 0
..........................................................CCACTTCCCCTGCAAACGTCCA............................................................................................. 22 1 1 1.00 1 1 0
.................................................................................................GACGTTGGCTCTGGCGGTGATGA..................................................... 23 2 1 1.00 1 1 0
..........................................................CCACCTCCCCTGCAAACGTCCTT............................................................................................ 23 2 1 1.00 1 1 0
..........................................................CCACCTCCCCTGCAAACGTCCAAA........................................................................................... 24 2 1 1.00 1 1 0
..........................................................CCACCTCCCCTGCCAACGTCCAT............................................................................................ 23 2 1 1.00 1 1 0
.................................................................................................GACGTTGGCTCCGGTGGTGATGT..................................................... 23 2 1 1.00 1 1 0
.................................................................................................GACGTTGGCTCTGGTGGTGAAAA..................................................... 23 3 6 0.50 3 3 0
..........................................................CCACCTCCCATGCAAACGTCCGT............................................................................................ 23 3 2 0.50 1 1 0
....................................................................................................GTTGGCTCTGGTGGTGATGTAAAC................................................. 24 3 2 0.50 1 1 0
..................................................................................................ACGTTGGCTCTGGTGGTGAAA...................................................... 21 2 3 0.33 1 1 0
..................................................................................................ACGTTGGCTCTGGTGGTGCTGT..................................................... 22 2 3 0.33 1 1 0
..........................................................CCCCCTCCCCTGCCAACGTCCA............................................................................................. 22 2 4 0.25 1 1 0

Anti-sense strand reads

TCGTTACTACCTCTTGGCTCGAACGGGGAAGGTTCACGACGGGGTACTTGTCAGAGGTGGTGGAGGGGACGTTTGCAGGTCACTACGTCTCCATTACCTGCAACCGAGACCACCACTACCTGTCAGGCTTGGAGGACGGCTGCTGGGTAAGTTGAAGATGCCTCGAAGAGAAG
***************************************..((.((.((((.(((((((......((.((((((((...((......))..)))))))).))...)))))))..)))).)).))......******************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:34 PM