ID:

rno-mir-129-2

 Coordinate:

chr3:83137297-83137393 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-50.3
mature
star
  1. chr3:83137355-83137375 -
  2. chr4:56301731-56301751 +

Sense Strand Reads

TGCTGGGCTAAAGGCGGCGGCGGCGGTGGCGGCGGACCGAAGAAGCGGGTAGACTGCCCTTCGCGAATCTTTTTGCGGTCTGGGCTTGCTGTACATAACTCAATAGCCGGAAGCCCTTACCCCAAAAAGCATTCGCGGAGGGCGCGCTCGGCGACGTGACTGCAGCTACCAGCGACCGCCGAAGCCAGCACCTTCCC
*****************************************************.(((((((((((((((((((((.(((..(((((((((((..........)))))...))))))..))).))))))).))))))))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
..............................................................................................................AAGCCCTTACCCCAAAAAGCAT................................................................. 22 0 1 308.00 308 260 48 0
..............................................................................................................AAGCCCTTACCCCAAAAAGCA.................................................................. 21 0 1 81.00 81 51 30 0
..............................................................................................................AAGCCCTTACCCCAAAAAGCAA................................................................. 22 1 1 19.00 19 16 3 0
..............................................................................................................AAGCCCTTACCCCAAAAAGC................................................................... 20 0 1 18.00 18 7 11 0
..............................................................................................................AAGCCCTTACCCCAAAAAGCATT................................................................ 23 0 1 17.00 17 16 1 0
....................................................................CTTTTTGCGGTCTGGGCTTGC............................................................................................................ 21 0 2 13.50 27 14 13 0
..............................................................................................................AAGCCCTTACCCCAAAAAG.................................................................... 19 0 2 11.50 23 3 20 0
...............................................................................................................AGCCCTTACCCCAAAAAGCAT................................................................. 21 0 1 10.00 10 9 1 0
.............................................................................................................AAAGCCCTTACCCCAAAAAGCATA................................................................ 24 2 1 8.00 8 8 0 0
..............................................................................................................AAGCCCTTACCCCAAAAAGCATA................................................................ 23 1 1 7.00 7 7 0 0
.............................................................................................................AAAGCCCTTACCCCAAAAAGCAT................................................................. 23 1 1 6.00 6 5 1 0
.............................................................................................................AAAGCCCTTACCCCAAAAAGC................................................................... 21 1 1 4.00 4 0 4 0
..............................................................................................................AAGCCCTTACCCCCAAAAGCAT................................................................. 22 1 1 4.00 4 4 0 0
....................................................................CTTTTTGCGGTCTGGGCTTG............................................................................................................. 20 0 2 3.50 7 2 5 0
............................................................................................................GGAAGCCCTTACCCCAAAAAGCA.................................................................. 23 0 1 3.00 3 3 0 0
..............................................................................................................AAGCCCTTACCCCACAAAGCAT................................................................. 22 1 1 3.00 3 3 0 0
.............................................................................................................GAAGCCCTTACCCCAAAAAGCA.................................................................. 22 0 1 3.00 3 3 0 0
...................................................................................................................CTTACCCCAAAAAGCAT................................................................. 17 0 1 3.00 3 1 2 0
.............................................................................................................AAAGCCCTTACCCCAAAAAG.................................................................... 20 1 2 2.50 5 0 5 0
..............................................................................................................AAGCCCTTACCCCCAAAAGCATT................................................................ 23 1 1 2.00 2 2 0 0
..............................................................................................................AAGCCCTTCCCCCAAAAAGCAT................................................................. 22 1 1 2.00 2 1 1 0
..............................................................................................................AAGCCCTTACCCCCAAAAGCA.................................................................. 21 1 1 2.00 2 2 0 0
...............................................................................................................AGCCCTTACCCCAAAAAGC................................................................... 19 0 1 2.00 2 0 2 0
..............................................................................................................AAGCCCTTACACCAAAAAGCAT................................................................. 22 1 1 2.00 2 2 0 0
..............................................................................................................AAGCCCTTACCCCAAAAAGCATTT............................................................... 24 1 1 2.00 2 1 0 1
....................................................................CTTTTTGCGGTCTGGGCTTGT............................................................................................................ 21 1 2 2.00 4 4 0 0
.............................................................................................................AAAGCCCTTACCCCAAAAAGCA.................................................................. 22 1 1 2.00 2 1 1 0
....................................................................CTTTTTGCGGTCTGGGCTTGTAA.......................................................................................................... 23 3 3 1.67 5 5 0 0
..............................................................................................................AAGCCCTTACCCCAAAAA..................................................................... 18 0 2 1.50 3 0 3 0
....................................................................CTTTTTGCGGTCTGGGCTTGCAT.......................................................................................................... 23 2 2 1.50 3 3 0 0
....................................................................CTTTTTGCGGTCTGGGCTTGA............................................................................................................ 21 1 2 1.50 3 3 0 0
....................................................................CTTTTTGCGGTCTGGGCTT.............................................................................................................. 19 0 2 1.50 3 1 2 0
..............................................................................................................AAGCCCTTACCCCAAAAAGCATG................................................................ 23 1 1 1.00 1 0 1 0
..............................................................................................................AAGCCCTTACCCCAAAAAGCCTTT............................................................... 24 2 1 1.00 1 1 0 0
...............................................................................................................AGCCCTTACCCCAAAAAGCATA................................................................ 22 1 1 1.00 1 1 0 0
..............................................................................................................AAGCCCTTACCCCAAAAATCAT................................................................. 22 1 1 1.00 1 1 0 0
.............................................................................................................GAAGCCCTTACCCCAAAAAGC................................................................... 21 0 1 1.00 1 0 1 0
...................................................................................................................CTTACCCCAAAAAGCA.................................................................. 16 0 1 1.00 1 0 1 0
..............................................................................................................AAGCCCTTACCCCAAAAAACAT................................................................. 22 1 1 1.00 1 1 0 0
..............................................................................................................AAGTCCTTACCCCAAAAAGCA.................................................................. 21 1 1 1.00 1 1 0 0
................................................GTAGACTGCCCTTCGCGAAT................................................................................................................................. 20 0 1 1.00 1 0 1 0
..............................................................................................................AAGCCCTTACCCCTAAAAGCAT................................................................. 22 1 1 1.00 1 1 0 0
..............................................................................................................AAGCCCTTACCACAAACAGCATT................................................................ 23 2 1 1.00 1 1 0 0
..............................................................................................................AAGCCCTTACTCCAAAAAGCA.................................................................. 21 1 1 1.00 1 1 0 0
..............................................................................................................AAGCCCTTACCCCAAACAGCATT................................................................ 23 1 1 1.00 1 1 0 0
..............................................................................................................AAGCCCTTACCCCAAAAAGCAG................................................................. 22 1 1 1.00 1 0 1 0
..............................................................................................................AAGCCCTTACCTCAAAAAGCAT................................................................. 22 1 1 1.00 1 1 0 0
.................................................................................................................CCCTTACCCCAAAAAGCAT................................................................. 19 0 1 1.00 1 0 1 0
....................................................................CTTTTTGCGGTCTGGGCTTGCTGT......................................................................................................... 24 0 2 1.00 2 2 0 0
..............................................................................................................AAGCCCTTACCCCAAAAAGCT.................................................................. 21 1 1 1.00 1 0 1 0
..............................................................................................................AAGCCCTTACCGCAAAAAGCATT................................................................ 23 1 1 1.00 1 1 0 0
....................................................................CTTTTTGCGGTCTGGGCTTGAAA.......................................................................................................... 23 3 3 1.00 3 2 1 0
..............................................................................................................AAGCCCTTACCCCAAACAGCAT................................................................. 22 1 1 1.00 1 1 0 0
.....................................................................TTTTTGCGGTCTGGGCTTGCTGT......................................................................................................... 23 0 2 1.00 2 2 0 0
.................................................AAGACTGCCCTTCGCGAAT................................................................................................................................. 19 1 1 1.00 1 0 1 0
..............................................................................................................AAGCCCTTACCCCAAAAAGCATCCGGGA........................................................... 28 3 1 1.00 1 1 0 0
............................................................................................................GGAAGCCCTTACCCCAAAAAGCAGT................................................................ 25 1 1 1.00 1 1 0 0
..............................................................................................................AAGCCCTTACCACAAAAAGCAT................................................................. 22 1 1 1.00 1 1 0 0
..............................................................................................................AAGCCCTTACCCCAAAA...................................................................... 17 0 2 1.00 2 1 1 0
..............................................................................................................AAGCCCTTACCCCAAAAAGCAC................................................................. 22 1 1 1.00 1 1 0 0
..............................................................................................................AAGCCCTTACCCCAAAACGC................................................................... 20 1 1 1.00 1 0 1 0
.............................................................................................................AAAGCCCTTACCCCAAAAAGCATT................................................................ 24 1 1 1.00 1 0 1 0
................................................................................................................GCCCTTACCCCAAAAAGCAT................................................................. 20 0 1 1.00 1 0 1 0
..............................................................................................................AAGCCCTTACCCCAAAAAGCG.................................................................. 21 1 1 1.00 1 0 0 1
..............................................................................................................AAGCCCTTACCCCAAAAAGCATTC............................................................... 24 0 1 1.00 1 1 0 0
.............................................................................................................GAAGCCCTTACCCCAAAAAG.................................................................... 20 0 2 1.00 2 0 2 0
....................................................................CTTTTTGCGGTCTGGGCTTGCAAAA........................................................................................................ 25 3 1 1.00 1 1 0 0
...............................................................................................................AGCCCTTACCCCAAAACGCAT................................................................. 21 1 1 1.00 1 1 0 0
..............................................................................................................AAGCCCTTACCACAAAAAGCA.................................................................. 21 1 1 1.00 1 1 0 0
....................................................................CTTTTTGCGGTCTGGGCTTGCAA.......................................................................................................... 23 2 2 1.00 2 2 0 0
..............................................................................................................AAGCCCTTACACCAAAAAGCA.................................................................. 21 1 1 1.00 1 1 0 0
..............................................................................................................AAGCCCTTACCCCAGAAAGCA.................................................................. 21 1 1 1.00 1 1 0 0
..............................................................................................................AAGACCTTACCCCAAAAAGCAT................................................................. 22 1 1 1.00 1 1 0 0
.............................................................................................................AAAGCCCTTACCCCAAAAAGCATAA............................................................... 25 3 1 1.00 1 1 0 0
..............................................................................................................AAGCCCTTACCCCAAAAAGCAAT................................................................ 23 1 1 1.00 1 1 0 0
..............................................................................................................AAGCCCTTCCCCCAAAAAGCA.................................................................. 21 1 1 1.00 1 1 0 0
....................................................................CTTTTTGCGGTCTGGGCTTGAA........................................................................................................... 22 2 3 1.00 3 3 0 0
..............................................................................................................AAACCCTTACCCCAAAAAGC................................................................... 20 1 1 1.00 1 0 1 0
..............................................................................................................AGGCCCTTACCCCAAAAAGCA.................................................................. 21 1 1 1.00 1 0 1 0
..............................................................................................................AAGCCCTTACCCCAAAAAGCAAA................................................................ 23 2 4 0.75 3 3 0 0
..............................................................................................................AAGCCCTTACCCCAAAAAGA................................................................... 20 1 3 0.67 2 0 2 0
..............................................................................................................AAGCCCATACCCCAAAAAGCA.................................................................. 21 1 2 0.50 1 1 0 0
....................................................................CTTTTTGCGGTCTGGGCTTGCT........................................................................................................... 22 0 2 0.50 1 0 1 0
....................................................................CTTTTTGCGGTCTGGGCTTGTTT.......................................................................................................... 23 2 2 0.50 1 1 0 0
....................................................................CTTTTTGCGGTCTGGGCTTGCTGTAAT...................................................................................................... 27 2 2 0.50 1 1 0 0
....................................................................CTTTTTGCGGTCTGGGCTTGCAGT......................................................................................................... 24 1 2 0.50 1 1 0 0
.............................................................................................................AAAGCCCTTACCCCAAAAAGCAGA................................................................ 24 3 4 0.50 2 2 0 0
...............................................................................................................AGCCCTTACCCCAAAAAG.................................................................... 18 0 2 0.50 1 0 1 0
....................................................................CTTTTTGCGGTCTGGGCTTGCTTT......................................................................................................... 24 1 2 0.50 1 1 0 0
..............................................................................................................AAGCCCTTACCCCAAA....................................................................... 16 0 2 0.50 1 0 1 0
.............................................................................................................AAAGCCCTTACCCCAAAACGCATA................................................................ 24 3 2 0.50 1 1 0 0
....................................................................CTTTTTGCGGTCTGGGCTTGCA........................................................................................................... 22 1 2 0.50 1 1 0 0
..............................................................................................................AAGCCCTTCCCCCACAAAGCAT................................................................. 22 2 2 0.50 1 1 0 0
..............................................................................................................AAACCCTTACCCCAAAAAGCAA................................................................. 22 2 3 0.33 1 0 1 0
..............................................................................................................AAGCCCTTACCTCACAAAGCAT................................................................. 22 2 3 0.33 1 1 0 0
..............................................................................................................AACCCCTTACCCCCAAAAGCAT................................................................. 22 2 3 0.33 1 1 0 0
..............................................................................................................AAGCCCTTACCCCAGAAAGCAA................................................................. 22 2 3 0.33 1 1 0 0
..............................................................................................................CAGCCCTTACCCCAAAAAG.................................................................... 19 1 3 0.33 1 1 0 0
..............................................................................................................GAGCCCTTCCCCCAAAAAGCAT................................................................. 22 2 3 0.33 1 1 0 0
..............................................................................................................AAGCCCTTACCCCCAAAACCAT................................................................. 22 2 4 0.25 1 1 0 0
....................................................................CTTTTTGCGGTCTGG.................................................................................................................. 15 0 4 0.25 1 0 1 0
....................................................................CTTTTTGCGGTCTGGGCTTTT............................................................................................................ 21 2 4 0.25 1 1 0 0
..............................................................................................................TAGCCCTTCCCCCAAAAAGCAT................................................................. 22 2 4 0.25 1 1 0 0
..............................................................................................................AAGCCCTTCCCCCAAAAAGCAA................................................................. 22 2 4 0.25 1 1 0 0
..............................................................................................................AAGCCCTTACCACAAAAAGCAA................................................................. 22 2 4 0.25 1 1 0 0
.............................................................................................................AAAGCCCTTACCCCAAAAA..................................................................... 19 1 5 0.20 1 0 1 0
...................................................................................................................CTTACCCCAAAAAGC................................................................... 15 0 5 0.20 1 0 1 0
..............................................................................................................CAGCCCTTCCCCCAAAAAGCAT................................................................. 22 2 5 0.20 1 1 0 0
.............................................................................................................AAAGCCCTTACCCCAAAAAGA................................................................... 21 2 8 0.13 1 0 1 0
....................................................................CTTTTTGCGGCCTGGGCTTGAG........................................................................................................... 22 3 8 0.13 1 0 1 0
.......................................................................TTAGCGGTCTGGGCTTG............................................................................................................. 17 1 9 0.11 1 0 1 0
..............................................................................................................AAGCCCTTACCCCAAACA..................................................................... 18 1 9 0.11 1 0 1 0
..............................................................................................................AAGCCCTTACCCCAAAAAAA................................................................... 20 2 20 0.10 2 0 2 0
..............................................................................................................AAGCCCTTACCCCAAAAAGCAAAA............................................................... 24 3 10 0.10 1 1 0 0
..............................................................................................................AAGCCCTTACCCCAAAAAGCCAA................................................................ 23 3 12 0.08 1 1 0 0
..............................................................................................................AAGCCCTTACCCCAAACAGCTA................................................................. 22 3 20 0.05 1 1 0 0

Anti-sense strand reads

ACGACCCGATTTCCGCCGCCGCCGCCACCGCCGCCTGGCTTCTTCGCCCATCTGACGGGAAGCGCTTAGAAAAACGCCAGACCCGAACGACATGTATTGAGTTATCGGCCTTCGGGAATGGGGTTTTTCGTAAGCGCCTCCCGCGCGAGCCGCTGCACTGACGTCGATGGTCGCTGGCGGCTTCGGTCGTGGAAGGG
**************************************************.(((((((((((((((((((((.(((..(((((((((((..........)))))...))))))..))).))))))).))))))))))))))...***************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:44 PM