ID:

rno-mir-129-1

 Coordinate:

chr4:56301726-56301797 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.0 -41.7 -41.4
mature
  1. chr3:83137355-83137375 -
  2. chr4:56301731-56301751 +
star
  1. chr3:83137315-83137333 -
  2. chr4:56301774-56301792 +

Sense Strand Reads

CAGTCCGGCAGGGGCTGCACCCGCCGCGACCTTTCCACAGCTGTCTCCTTTGGGTCTTTTTGCGGTCTGGGCTTGCTGTTCTCTCCACAGTAGTCAGGAAGCCCTTACCCCAAAAAGTATCTGCGGGAGGCTTGGTCTACAGGAGAGACCCCCAAGGGCTCCGGGTGAGCAC
****************************************..(((((((.((((((((((((.(((..((((((.(((..((((....)).)).))).))))))..))).))))))).))))).))))))).**************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528817
Adult_testes		 GSM1528819
10dpp_testes
.......................................................CTTTTTGCGGTCTGGGCTTGC................................................................................................ 21 0 2 13.50 27 13 14
..................................................................................................AAGCCCTTACCCCAAAAAG....................................................... 19 0 2 11.50 23 20 3
.......................................................CTTTTTGCGGTCTGGGCTTG................................................................................................. 20 0 2 3.50 7 5 2
.................................................................................................AAAGCCCTTACCCCAAAAAG....................................................... 20 1 2 2.50 5 5 0
.......................................................CTTTTTGCGGTCTGGGCTTGT................................................................................................ 21 1 2 2.00 4 0 4
.......................................................CTTTTTGCGGTCTGGGCTTGTAA.............................................................................................. 23 3 3 1.67 5 0 5
.......................................................CTTTTTGCGGTCTGGGCTT.................................................................................................. 19 0 2 1.50 3 2 1
..................................................................................................AAGCCCTTACCCCAAAAA........................................................ 18 0 2 1.50 3 3 0
.......................................................CTTTTTGCGGTCTGGGCTTGA................................................................................................ 21 1 2 1.50 3 0 3
.......................................................CTTTTTGCGGTCTGGGCTTGCAT.............................................................................................. 23 2 2 1.50 3 0 3
..................................................................................................AAGCCCTTACCCCAAAAAGTATAT.................................................. 24 1 1 1.00 1 0 1
..................................................................................................AAGCCCTTACCCCAAAA......................................................... 17 0 2 1.00 2 1 1
.......................................................CTTTTTGCGGTCTGGGCTTGCTGT............................................................................................. 24 0 2 1.00 2 0 2
........................................................TTTTTGCGGTCTGGGCTTGCTGT............................................................................................. 23 0 2 1.00 2 0 2
.................................................................................................GAAGCCCTTACCCCAAAAAG....................................................... 20 0 2 1.00 2 2 0
.......................................................CTTTTTGCGGTCTGGGCTTGCAA.............................................................................................. 23 2 2 1.00 2 0 2
..................................................................................................AAGCCCTTACCCCAAAAAGTAT.................................................... 22 0 1 1.00 1 0 1
...................................................................................................AGCCCTTACCCCAAAAAGTAT.................................................... 21 0 1 1.00 1 0 1
..................................................................................................AAGCCCTTACCCCAAAAAGT...................................................... 20 0 1 1.00 1 1 0
.......................................................CTTTTTGCGGTCTGGGCTTGAA............................................................................................... 22 2 3 1.00 3 0 3
.......................................................CTTTTTGCGGTCTGGGCTTGAAA.............................................................................................. 23 3 3 1.00 3 1 2
..................................................................................................AAGCCCTTACCCCAAAAAGA...................................................... 20 1 3 0.67 2 2 0
..................................................................................................AAGCCCTTACCCCAAA.......................................................... 16 0 2 0.50 1 1 0
.......................................................CTTTTTGCGGTCTGGGCTTGCAGT............................................................................................. 24 1 2 0.50 1 0 1
.......................................................CTTTTTGCGGTCTGGGCTTGCTGTAAT.......................................................................................... 27 2 2 0.50 1 0 1
...................................................................................................AGCCCTTACCCCAAAAAG....................................................... 18 0 2 0.50 1 1 0
.......................................................CTTTTTGCGGTCTGGGCTTGTTT.............................................................................................. 23 2 2 0.50 1 0 1
.......................................................CTTTTTGCGGTCTGGGCTTGCA............................................................................................... 22 1 2 0.50 1 0 1
.......................................................CTTTTTGCGGTCTGGGCTTGCT............................................................................................... 22 0 2 0.50 1 1 0
.......................................................CTTTTTGCGGTCTGGGCTTGCTTT............................................................................................. 24 1 2 0.50 1 0 1
..................................................................................................CAGCCCTTACCCCAAAAAG....................................................... 19 1 3 0.33 1 0 1
.......................................................CTTTTTGCGGTCTGG...................................................................................................... 15 0 4 0.25 1 1 0
.......................................................CTTTTTGCGGTCTGGGCTTTT................................................................................................ 21 2 4 0.25 1 0 1
.................................................................................................AAAGCCCTTACCCCAAAAA........................................................ 19 1 5 0.20 1 1 0
.......................................................CTTTTTGCGGCCTGGGCTTGAG............................................................................................... 22 3 8 0.13 1 1 0
.................................................................................................AAAGCCCTTACCCCAAAAAGA...................................................... 21 2 8 0.13 1 1 0
..................................................................................................AAGCCCTTACCCCAAACA........................................................ 18 1 9 0.11 1 1 0
..........................................................TTAGCGGTCTGGGCTTG................................................................................................. 17 1 9 0.11 1 1 0
..................................................................................................AAGCCCTTACCCCAAAAAAA...................................................... 20 2 20 0.10 2 2 0
.....................................................................................................ACCTTACCCCAAAAAG....................................................... 16 1 20 0.05 1 1 0

Anti-sense strand reads

GTCAGGCCGTCCCCGACGTGGGCGGCGCTGGAAAGGTGTCGACAGAGGAAACCCAGAAAAACGCCAGACCCGAACGACAAGAGAGGTGTCATCAGTCCTTCGGGAATGGGGTTTTTCATAGACGCCCTCCGAACCAGATGTCCTCTCTGGGGGTTCCCGAGGCCCACTCGTG
****************************************..(((((((.((((((((((((.(((..((((((.(((..((((....)).)).))).))))))..))).))))))).))))).))))))).**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:45 PM