ID:

rno-mir-128-2

 Coordinate:

chr8:120378945-120379028 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.4 -41.2 -41.0
mature
  1. chr13:44916583-44916603 +
  2. chr8:120378957-120378977 -
star

Sense Strand Reads

CTGTCACGATGGCCACATGCCTGCCACCCACCCAGAGCCCCGGCAGCCACTGTGCAGTGGGAAGGGGGGCCGATGCACTGTAAGAGAGTGAGTAGCAGGTCTCACAGTGAACCGGTCTCTTTCCCTACTGTGTCAAACTCCTAAGGAATGCCGCTATCCAGAGAGCAGCAGGCACCCAGCAGGG
***********************************..((..((.((....(((((((((((.((((((((((...((((((..((((.((.....))..))))))))))...)))))))))).))))))))).))..))))...))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
.....................................................................................................TCACAGTGAACCGGTCTCTTT.............................................................. 21 0 2 186.00 372 292 78 2
.....................................................................................................TCACAGTGAACCGGTCTCTTTAA............................................................ 23 2 2 168.50 337 337 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTA............................................................. 22 1 2 61.50 123 123 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTT............................................................... 20 0 2 12.50 25 19 6 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTCA............................................................ 23 1 1 12.00 12 12 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTAG............................................................ 23 2 2 11.00 22 22 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTA.............................................................. 21 1 2 9.50 19 19 0 0
......................................................................................................CACAGTGAACCGGTCTCTTT.............................................................. 20 0 2 7.00 14 8 6 0
.....................................................................................................TCACAGTGAACCGGTCTCTTAA............................................................. 22 2 2 7.00 14 14 0 0
.....................................................................................................TCACAGTGAACCGGTCTCT................................................................ 19 0 2 6.50 13 8 5 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTAAT........................................................... 24 3 3 6.00 18 18 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTAAA........................................................... 24 3 5 5.80 29 29 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTGA............................................................ 23 2 2 5.50 11 11 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTCT............................................................ 23 1 2 5.00 10 10 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTAC............................................................ 23 1 1 5.00 5 5 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTAAA............................................................ 23 3 4 4.50 18 18 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTC............................................................. 22 0 1 4.00 4 4 0 0
.........................................................................................................AGTGAACCGGTCTCTTT.............................................................. 17 0 2 3.50 7 2 5 0
....................................................................................................ATCACAGTGAACCGGTCTCTTTAA............................................................ 24 3 3 3.33 10 10 0 0
......................................................................................................CACAGTGAACCGGTCTCTTTAA............................................................ 22 2 2 3.00 6 6 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTAGA........................................................... 24 3 2 2.50 5 5 0 0
....................................................................................................ATCACAGTGAACCGGTCTCTTT.............................................................. 22 1 2 2.50 5 5 0 0
......................................................................................................CACAGTGAACCGGTCTCTT............................................................... 19 0 2 2.50 5 4 1 0
.....................................................................................................TCACAGTGAACCGGTCT.................................................................. 17 0 2 2.50 5 1 4 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTCAA........................................................... 24 2 1 2.00 2 2 0 0
........................................................................................................CAGTGAACCGGTCTCTTT.............................................................. 18 0 2 2.00 4 1 3 0
.....................................................................................................TCACAGTGCACCGGTCTCTTT.............................................................. 21 1 2 2.00 4 4 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTACT........................................................... 24 2 1 2.00 2 2 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTG............................................................. 22 1 2 2.00 4 4 0 0
......................................................................................................CACAGTGAACCGGTCTCTTTA............................................................. 21 1 2 2.00 4 4 0 0
..................................................................................................GTTTCACAGTGAACCGGTCTCTTT.............................................................. 24 1 1 2.00 2 2 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTGA............................................................. 22 2 2 1.50 3 3 0 0
.....................................................................................................TCACAGTGAACCGGTCTC................................................................. 18 0 2 1.50 3 0 3 0
....................................................................................................ATCACAGTGAACCGGTCTCTT............................................................... 21 1 2 1.50 3 0 3 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTAAC........................................................... 24 2 2 1.50 3 3 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTCTT........................................................... 24 2 2 1.50 3 3 0 0
....................................................................................................ATCACAGTGAACCGGTCTCTTTA............................................................. 23 2 2 1.50 3 3 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTAAG........................................................... 24 3 3 1.33 4 4 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTTC............................................................ 23 1 2 1.00 2 2 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTCTTT.......................................................... 25 2 1 1.00 1 1 0 0
.....................................................................................................TCACCGTGAACCGGTCTCTTTCA............................................................ 23 2 1 1.00 1 1 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTGCTTT......................................................... 26 3 1 1.00 1 1 0 0
.....................................................................................................TCACTGTGAACCGGTCTCTTTCA............................................................ 23 2 1 1.00 1 1 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTAA.............................................................. 21 2 3 0.67 2 2 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTAAG............................................................ 23 3 3 0.67 2 2 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTAG............................................................. 22 2 3 0.67 2 2 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTGAA........................................................... 24 3 7 0.57 4 4 0 0
..................................................................................................CCCTCACAGTGAACCGGTCTCTT............................................................... 23 2 2 0.50 1 1 0 0
.....................................................................................................TCACAGTGAAGCGGTCTCTTT.............................................................. 21 1 2 0.50 1 1 0 0
.....................................................................................................TCACAGTGAACCGGTCTCCTTA............................................................. 22 2 2 0.50 1 1 0 0
.....................................................................................................TCACAGTAAACCGGTCTCTTTA............................................................. 22 2 2 0.50 1 1 0 0
.....................................................................................................TCACAGTGAACCGGTCCCTT............................................................... 20 1 2 0.50 1 1 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTGTTT.......................................................... 25 3 2 0.50 1 1 0 0
......................................................................................................CACAGTGAACCGGCCTCTTT.............................................................. 20 1 2 0.50 1 1 0 0
.....................................................................................................TCACAGTGAACCGGACTCTTT.............................................................. 21 1 2 0.50 1 1 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTA............................................................... 20 1 2 0.50 1 0 1 0
...................................................................................................AATCACAGTGAACCGGTCTCTTTA............................................................. 24 3 2 0.50 1 1 0 0
....................................................................................................ATCACAGCGAACCGGTCTCTTT.............................................................. 22 2 2 0.50 1 0 1 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTAGT........................................................... 24 3 2 0.50 1 1 0 0
.....................................................................................................TCACAGTGAACCGATCTCTTT.............................................................. 21 1 2 0.50 1 1 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTAT.............................................................. 21 1 2 0.50 1 1 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTTAAAT.......................................................... 25 3 2 0.50 1 1 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTTC.............................................................. 21 1 2 0.50 1 1 0 0
.....................................................................................................TCACAGTGCACCGGTCTCTTTCAA........................................................... 24 3 2 0.50 1 1 0 0
.......................................................................................................ACAGTGAACCGGTCTCTTT.............................................................. 19 0 2 0.50 1 0 1 0
.....................................................................................................CCACAGTGAACCGGTCTCTTT.............................................................. 21 1 2 0.50 1 1 0 0
.....................................................................................................TCACAGCGAACCGGTCTCTTTA............................................................. 22 2 2 0.50 1 1 0 0
.....................................................................................................TCACAGTTAACCGGTCTCTTTA............................................................. 22 2 2 0.50 1 1 0 0
.....................................................................................................TCACAGTGAACGGGTCTCTTT.............................................................. 21 1 2 0.50 1 1 0 0
.....................................................................................................TCTCAGTGAACCGGTCTCTT............................................................... 20 1 2 0.50 1 0 1 0
.....................................................................................................TCACAGTGAACAGGTCTCTTT.............................................................. 21 1 2 0.50 1 0 1 0
.....................................................................................................TCACGGTGAACCGATCTCTTT.............................................................. 21 2 2 0.50 1 1 0 0
..........................................................................................................GTGAACCGGTCTCTT............................................................... 15 0 2 0.50 1 0 1 0
......................................................................................................TACAGTGAACCGGTCTCTT............................................................... 19 1 2 0.50 1 0 1 0
.......................................................................................................ACAGTGAACCGGTCTCTT............................................................... 18 0 2 0.50 1 0 1 0
.....................................................................................................TCACAGTGAACCGGTC................................................................... 16 0 2 0.50 1 0 1 0
....................................................................................................CTCACAGTGAACCGGTCTCTTT.............................................................. 22 0 2 0.50 1 1 0 0
.....................................................................................................TAACAGTGAACCGGTCTCTTTA............................................................. 22 2 2 0.50 1 1 0 0
.....................................................................................................TCGCAGTGAACCGGTCTCT................................................................ 19 1 2 0.50 1 0 1 0
.....................................................................................................TCACAGTGAACCGGTCTTTTT.............................................................. 21 1 2 0.50 1 1 0 0
.....................................................................................................TCACAGTGAACCGGCCTCTTT.............................................................. 21 1 2 0.50 1 1 0 0
.....................................................................................................TCACCGTGAACCGGTCTCTTTAA............................................................ 23 3 3 0.33 1 1 0 0
.....................................................................................................TCACAGTGAACCGGTCTTT................................................................ 19 1 3 0.33 1 1 0 0
......................................................................................................CACAGTGAACCGGACTCTT............................................................... 19 1 3 0.33 1 1 0 0
....................................................................................................ATCACAGTGAACCGGTCTCTTAA............................................................. 23 3 3 0.33 1 1 0 0
.....................................................................................................TCACAGTGAACCGGCCTCTTTAA............................................................ 23 3 3 0.33 1 1 0 0
.....................................................................................................TCACATTGAACCGGTCTCTTTAA............................................................ 23 3 3 0.33 1 1 0 0
......................................................................................................CACAGTGAACCGGTC................................................................... 15 0 3 0.33 1 0 1 0
.....................................................................................................TCACAGCGAACCGGTCTCTTTAA............................................................ 23 3 3 0.33 1 1 0 0
.....................................................................................................TCTCAGTGAACCGGTCTCTTTAGC........................................................... 24 3 3 0.33 1 1 0 0
.....................................................................................................TCACAGTGAACCGATCTCTTTA............................................................. 22 2 3 0.33 1 1 0 0
.....................................................................................................TCACAGTGAACCAGTCTCTTTAA............................................................ 23 3 9 0.33 3 3 0 0
.....................................................................................................TCATAGTGAACCGGTCTCTTTAA............................................................ 23 3 3 0.33 1 1 0 0
.....................................................................................................TCACAGTGCACCGGTCTCTTTGA............................................................ 23 3 4 0.25 1 1 0 0
.....................................................................................................TCGCAGTGAACCGGTCTCTTTAA............................................................ 23 3 4 0.25 1 1 0 0
.....................................................................................................TCACAGTGAACAGGTCTCTTTA............................................................. 22 2 4 0.25 1 1 0 0
......................................................................................................CACAGTGAACCGGTCTCTTTAAA........................................................... 23 3 8 0.25 2 2 0 0
.........................................................................................................ATTGAACCGGTCTCTTT.............................................................. 17 1 4 0.25 1 0 1 0
.....................................................................................................TCACAGTAAACCGGTCTCTTTAA............................................................ 23 3 5 0.20 1 1 0 0
.....................................................................................................TCAGAGTGAACCGGTCTCTTTAA............................................................ 23 3 5 0.20 1 1 0 0
.....................................................................................................TCACAGTGAACCGGTCTCTAAA............................................................. 22 3 16 0.19 3 3 0 0
.......................................................................................................TCAGTGAACCGGTCTCTT............................................................... 18 1 6 0.17 1 0 1 0
.....................................................................................................TCACAGTGAACCGGTCTCTTGAA............................................................ 23 3 7 0.14 1 1 0 0
.........................................................................................................AGTGAACCGGTCTCTTTAA............................................................ 19 2 16 0.06 1 1 0 0
......................................................................................................AACAGTGAACCGGTCTCTTTAA............................................................ 22 3 17 0.06 1 1 0 0
......................................................................................................CACAGTGAACCGGTCTCTTAAA............................................................ 22 3 20 0.05 1 1 0 0

Anti-sense strand reads

GACAGTGCTACCGGTGTACGGACGGTGGGTGGGTCTCGGGGCCGTCGGTGACACGTCACCCTTCCCCCCGGCTACGTGACATTCTCTCACTCATCGTCCAGAGTGTCACTTGGCCAGAGAAAGGGATGACACAGTTTGAGGATTCCTTACGGCGATAGGTCTCTCGTCGTCCGTGGGTCGTCCC
***********************************..((..((.((....(((((((((((.((((((((((...((((((..((((.((.....))..))))))))))...)))))))))).))))))))).))..))))...))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:51 PM