ID:

rno-mir-128-1

 Coordinate:

chr13:44916534-44916615 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.9
mature
  1. chr13:44916583-44916603 +
  2. chr8:120378957-120378977 -
star

Sense Strand Reads

TTGCAGCTTCTCCTTATGTGATTATATCTTACAATAATGGGCCTTGTTCCTGAGCTGTTGGATTCGGGGCCGTAGCACTGTCTGAGAGGTTTACATTTCTCACAGTGAACCGGTCTCTTTTTCAGCTGCTTCCTGACTTCTTTTTACTCAGGGTATTAATATTTATTTATATTTTCCATTAC
*************************************************..((((.((((((...(((((((...((((((..(((((((....)))))))))))))...)))))))...)))))).))))....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528819
10dpp_testes		 GSM1528817
Adult_testes		 GSM1528818
Adult_testes_Mili_IP
...................................................................................................TCACAGTGAACCGGTCTCTTT.............................................................. 21 0 2 186.00 372 292 78 2
...................................................................................................TCACAGTGAACCGGTCTCTTTAA............................................................ 23 2 2 168.50 337 337 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTAT............................................................ 23 1 1 114.00 114 114 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTT............................................................. 22 0 1 89.00 89 85 4 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTA............................................................ 23 1 1 76.00 76 76 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTT............................................................ 23 0 1 67.00 67 65 2 0
...................................................................................................TCACAGTGAACCGGTCTCTTTA............................................................. 22 1 2 61.50 123 123 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTAT........................................................... 24 2 1 37.00 37 37 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTAA........................................................... 24 2 1 18.00 18 18 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTTT........................................................... 24 1 1 14.00 14 14 0 0
...................................................................................................TCACAGTGAACCGGTCTCTT............................................................... 20 0 2 12.50 25 19 6 0
...................................................................................................TCACAGTGAACCGGTCTCTTTAG............................................................ 23 2 2 11.00 22 22 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTA.............................................................. 21 1 2 9.50 19 19 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTGT............................................................ 23 1 1 9.00 9 9 0 0
....................................................................................................CACAGTGAACCGGTCTCTTT.............................................................. 20 0 2 7.00 14 8 6 0
...................................................................................................TCACAGTGAACCGGTCTCTTAA............................................................. 22 2 2 7.00 14 14 0 0
...................................................................................................TCACAGTGAACCGGTCTCT................................................................ 19 0 2 6.50 13 8 5 0
...................................................................................................TCACAGTGAACCGGTCTCTTTAAT........................................................... 24 3 3 6.00 18 18 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTAAA........................................................... 24 3 5 5.80 29 29 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTGA............................................................ 23 2 2 5.50 11 11 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTAT............................................................. 22 1 1 5.00 5 5 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTCT............................................................ 23 1 2 5.00 10 10 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTAAT............................................................ 23 2 1 5.00 5 5 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTAAA............................................................ 23 3 4 4.50 18 18 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTTAA.......................................................... 25 1 1 4.00 4 4 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTTA........................................................... 24 1 1 4.00 4 4 0 0
................................................................CGGGGCCGTAGCACTGTCTGAGA............................................................................................... 23 0 1 4.00 4 4 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTGA........................................................... 24 2 1 4.00 4 4 0 0
....................................................................................................CACAGTGAACCGGTCTCTTTAT............................................................ 22 1 1 4.00 4 4 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTTAT.......................................................... 25 2 1 4.00 4 4 0 0
..................................................................................................ATCACAGTGAACCGGTCTCTTTTT............................................................ 24 1 1 4.00 4 4 0 0
.......................................................................................................AGTGAACCGGTCTCTTT.............................................................. 17 0 2 3.50 7 2 5 0
..................................................................................................ATCACAGTGAACCGGTCTCTTTAA............................................................ 24 3 3 3.33 10 10 0 0
....................................................................................................CACAGTGAACCGGTCTCTTTAA............................................................ 22 2 2 3.00 6 6 0 0
..................................................................................................ATCACAGTGAACCGGTCTCTTTT............................................................. 23 1 1 3.00 3 2 1 0
....................................................................................................CACAGTGAACCGGTCTCTTTTA............................................................ 22 1 1 3.00 3 3 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTAAAA.......................................................... 25 3 1 3.00 3 3 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTAAA.......................................................... 25 2 1 3.00 3 3 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTTTT.......................................................... 25 2 1 3.00 3 3 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTAGA........................................................... 24 3 2 2.50 5 5 0 0
..................................................................................................ATCACAGTGAACCGGTCTCTTT.............................................................. 22 1 2 2.50 5 5 0 0
....................................................................................................CACAGTGAACCGGTCTCTT............................................................... 19 0 2 2.50 5 4 1 0
...................................................................................................TCACAGTGAACCGGTCT.................................................................. 17 0 2 2.50 5 1 4 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTAG........................................................... 24 2 1 2.00 2 2 0 0
......................................................................................................CAGTGAACCGGTCTCTTT.............................................................. 18 0 2 2.00 4 1 3 0
...................................................................................................TCACAGTGAACCGGTCTCTTTG............................................................. 22 1 2 2.00 4 4 0 0
...................................................................................................TCACAGTGCACCGGTCTCTTT.............................................................. 21 1 2 2.00 4 4 0 0
....................................................................................................CACAGTGAACCGGTCTCTTTA............................................................. 21 1 2 2.00 4 4 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTATT........................................................... 24 2 1 2.00 2 2 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTGTT........................................................... 24 2 1 2.00 2 2 0 0
....................................................................................................CACAGTGAACCGGTCTCTTTTT............................................................ 22 0 1 2.00 2 2 0 0
..................................................................................................ATCACAGTGAACCGGTCTCTT............................................................... 21 1 2 1.50 3 0 3 0
...................................................................................................TCACAGTGAACCGGTCTCTTTAAC........................................................... 24 2 2 1.50 3 3 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTGA............................................................. 22 2 2 1.50 3 3 0 0
...................................................................................................TCACAGTGAACCGGTCTC................................................................. 18 0 2 1.50 3 0 3 0
..................................................................................................ATCACAGTGAACCGGTCTCTTTA............................................................. 23 2 2 1.50 3 3 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTCTT........................................................... 24 2 2 1.50 3 3 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTAAG........................................................... 24 3 3 1.33 4 4 0 0
...................................................................................................TCACAGCGAACCGGTCTCTTTTT............................................................ 23 1 1 1.00 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTGT........................................................... 24 2 1 1.00 1 1 0 0
...................................................................................................TCGCAGTGAACCGGTCTCTTTTA............................................................ 23 2 1 1.00 1 1 0 0
...................................................................................................TCACAGTGCACCGGTCTCTTTTT............................................................ 23 1 1 1.00 1 1 0 0
...................................................................................................TCACAGTGAAACGGTCTCTTTT............................................................. 22 1 1 1.00 1 1 0 0
....................................................................................................CACAGTGAACCGGTCTCTTAT............................................................. 21 1 1 1.00 1 1 0 0
..................................................................................................ATCACAGTGAACCGGTCTCTTTTAA........................................................... 25 3 1 1.00 1 1 0 0
..................................................................................................ATCACAGTGAACCGGTCTCTTAT............................................................. 23 2 1 1.00 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTAAG.......................................................... 25 3 1 1.00 1 1 0 0
................................................................CGGGGCCGTAGCACTGTCTGTT................................................................................................ 22 2 1 1.00 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCTCTATT............................................................. 22 1 1 1.00 1 1 0 0
.......................................................................................................AGTGAACCGGTCTCTTTTT............................................................ 19 0 1 1.00 1 0 1 0
...................................................................................................TCACAGTGAACCGGTCCCTTTAT............................................................ 23 2 1 1.00 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTTTTT......................................................... 26 3 1 1.00 1 0 1 0
...................................................................................................TCACAGTGAACCGGTCTCTTTATA........................................................... 24 2 1 1.00 1 1 0 0
....................................................................................................CACAGTGAACAGGTCTCTTTTTT........................................................... 23 2 1 1.00 1 0 1 0
................................................................CGGGGCCGTAGCACTGTCTGA................................................................................................. 21 0 1 1.00 1 1 0 0
....................................................................................................CACAGTGAACCGGTCTCTTTT............................................................. 21 0 1 1.00 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTAATA........................................................... 24 3 1 1.00 1 1 0 0
..................................................................................................ATCACAGTGAACCGGTCTCTTTAT............................................................ 24 2 1 1.00 1 1 0 0
....................................................................................................CACAGTGAACCGGTCTCTTTTTA........................................................... 23 1 1 1.00 1 1 0 0
...................................................................................................TCAAAGTGAACCGGTCTCTTTAT............................................................ 23 2 1 1.00 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTTGA.......................................................... 25 1 1 1.00 1 1 0 0
...................................................................................................TCACAGTGAAACGGTCTCTTTTA............................................................ 23 2 1 1.00 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCTCTAGT............................................................. 22 2 1 1.00 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTTC............................................................ 23 1 2 1.00 2 2 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTGTTAT......................................................... 26 3 1 1.00 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTAG............................................................. 22 2 3 0.67 2 2 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTAAG............................................................ 23 3 3 0.67 2 2 0 0
...................................................................................................TCACAGTGAACCGGTCTCTAA.............................................................. 21 2 3 0.67 2 2 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTGAA........................................................... 24 3 7 0.57 4 4 0 0
...................................................................................................TCACAGTGAACCGGTC................................................................... 16 0 2 0.50 1 0 1 0
........................................................................................................GTGAACCGGTCTCTT............................................................... 15 0 2 0.50 1 0 1 0
...................................................................................................TCACAGTGAACCGGTCTCTTTGTTT.......................................................... 25 3 2 0.50 1 1 0 0
...................................................................................................TCACAGTGAACCGGCCTCTTT.............................................................. 21 1 2 0.50 1 1 0 0
...................................................................................................TCACAGTGAACGGGTCTCTTT.............................................................. 21 1 2 0.50 1 1 0 0
...................................................................................................TCACGGTGAACCGATCTCTTT.............................................................. 21 2 2 0.50 1 1 0 0
...................................................................................................TCACAGTGAACAGGTCTCTTTTA............................................................ 23 2 2 0.50 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCTCCTTA............................................................. 22 2 2 0.50 1 1 0 0
...................................................................................................TCTCAGTGAACCGGTCTCTT............................................................... 20 1 2 0.50 1 0 1 0
.....................................................................................................ACAGTGAACCGGTCTCTT............................................................... 18 0 2 0.50 1 0 1 0
...................................................................................................TCACAGTTAACCGGTCTCTTTA............................................................. 22 2 2 0.50 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCTCTAT.............................................................. 21 1 2 0.50 1 1 0 0
...................................................................................................TCACAGCGAACCGGTCTCTTTA............................................................. 22 2 2 0.50 1 1 0 0
....................................................................................................CACAGTGAACCGGTCTCTTAAT............................................................ 22 2 2 0.50 1 1 0 0
...................................................................................................TAACAGTGAACCGGTCTCTTTA............................................................. 22 2 2 0.50 1 1 0 0
...................................................................................................TCACAGTGAAGCGGTCTCTTT.............................................................. 21 1 2 0.50 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCTCTA............................................................... 20 1 2 0.50 1 0 1 0
..................................................................................................CTCACAGTGAACCGGTCTCTTT.............................................................. 22 0 2 0.50 1 1 0 0
...................................................................................................TCACAGTGCACCGGTCTCTTTTAT........................................................... 24 3 2 0.50 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCTTTTT.............................................................. 21 1 2 0.50 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCCCTT............................................................... 20 1 2 0.50 1 1 0 0
...................................................................................................TCACAGTGAACCGGACTCTTT.............................................................. 21 1 2 0.50 1 1 0 0
.....................................................................................................ACAGTGAACCGGTCTCTTT.............................................................. 19 0 2 0.50 1 0 1 0
...................................................................................................TCACAGTGAACCGGTCTCTTC.............................................................. 21 1 2 0.50 1 1 0 0
...................................................................................................TCGCAGTGAACCGGTCTCT................................................................ 19 1 2 0.50 1 0 1 0
...................................................................................................TCACAGTGAACCGATCTCTTT.............................................................. 21 1 2 0.50 1 1 0 0
....................................................................................................TACAGTGAACCGGTCTCTT............................................................... 19 1 2 0.50 1 0 1 0
.................................................................................................AATCACAGTGAACCGGTCTCTTTA............................................................. 24 3 2 0.50 1 1 0 0
...................................................................................................TCATAGTGAACAGGTCTCTTTTT............................................................ 23 2 2 0.50 1 1 0 0
...................................................................................................TCAAAGTGCACCGGTCTCTTTTT............................................................ 23 2 2 0.50 1 1 0 0
...................................................................................................TCACAGTAAACCGGTCTCTTTA............................................................. 22 2 2 0.50 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCTCTTTAGT........................................................... 24 3 2 0.50 1 1 0 0
....................................................................................................CACAGTGAACCGGCCTCTTT.............................................................. 20 1 2 0.50 1 1 0 0
...................................................................................................CCACAGTGAACCGGTCTCTTT.............................................................. 21 1 2 0.50 1 1 0 0
..................................................................................................ATCACAGCGAACCGGTCTCTTT.............................................................. 22 2 2 0.50 1 0 1 0
...................................................................................................TCACAGTGAACAGGTCTCTTT.............................................................. 21 1 2 0.50 1 0 1 0
...................................................................................................TTACAGTGAACCGGTCTCTTTAT............................................................ 23 2 2 0.50 1 1 0 0
...................................................................................................TCACAGGGAAACGGTCTCTTTTT............................................................ 23 2 2 0.50 1 1 0 0
................................................................................................CCCTCACAGTGAACCGGTCTCTT............................................................... 23 2 2 0.50 1 1 0 0
...................................................................................................TCATAGTGAACCGGTCTCTTTAA............................................................ 23 3 3 0.33 1 1 0 0
....................................................................................................CACAGTGAACCGGTC................................................................... 15 0 3 0.33 1 0 1 0
....................................................................................................GACCGTGAACCGGTCTCTTTAT............................................................ 22 3 3 0.33 1 1 0 0
...................................................................................................TCTCAGTGAACCGGTCTCTTTAGC........................................................... 24 3 3 0.33 1 1 0 0
...................................................................................................TCACAGTGAACCGATCTCTTTA............................................................. 22 2 3 0.33 1 1 0 0
...................................................................................................TCACAGTGAACCGGCCTCTTTAA............................................................ 23 3 3 0.33 1 1 0 0
...................................................................................................TCACAGTGAACCAGTCTCTTTAA............................................................ 23 3 9 0.33 3 3 0 0
....................................................................................................CACAGTGAACCGGACTCTT............................................................... 19 1 3 0.33 1 1 0 0
...................................................................................................TCACCGTGAACCGGTCTCTTTAA............................................................ 23 3 3 0.33 1 1 0 0
...................................................................................................TCACATTGAACCGGTCTCTTTAA............................................................ 23 3 3 0.33 1 1 0 0
..................................................................................................ATCACAGTGAACCGGTCTCTTAA............................................................. 23 3 3 0.33 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCTTT................................................................ 19 1 3 0.33 1 1 0 0
...................................................................................................TCACAGCGAACCGGTCTCTTTAA............................................................ 23 3 3 0.33 1 1 0 0
.......................................................................................................ATTGAACCGGTCTCTTT.............................................................. 17 1 4 0.25 1 0 1 0
...................................................................................................TCGCAGTGAACCGGTCTCTTTAA............................................................ 23 3 4 0.25 1 1 0 0
....................................................................................................CACAGTGAACCGGTCTCTTTAAA........................................................... 23 3 8 0.25 2 2 0 0
...................................................................................................TCACAGTGAACAGGTCTCTTTA............................................................. 22 2 4 0.25 1 1 0 0
...................................................................................................TCACAGTGCACCGGTCTCTTTGA............................................................ 23 3 4 0.25 1 1 0 0
...................................................................................................TCACAGTAAACCGGTCTCTTTAA............................................................ 23 3 5 0.20 1 1 0 0
...................................................................................................TCAGAGTGAACCGGTCTCTTTAA............................................................ 23 3 5 0.20 1 1 0 0
...................................................................................................TCAGAGTGCACCGGTCTCTTTAT............................................................ 23 3 5 0.20 1 1 0 0
...................................................................................................TCACAGTGAACCGGTCTCTAAA............................................................. 22 3 16 0.19 3 3 0 0
.....................................................................................................TCAGTGAACCGGTCTCTT............................................................... 18 1 6 0.17 1 0 1 0
...................................................................................................TCACAGTGAACCGGTCTCTTGAA............................................................ 23 3 7 0.14 1 1 0 0
...................................................GTGCTGTTGCATTCGGGACCG.............................................................................................................. 21 3 14 0.07 1 0 0 1
.......................................................................................................AGTGAACCGGTCTCTTTAA............................................................ 19 2 16 0.06 1 1 0 0
....................................................................................................AACAGTGAACCGGTCTCTTTAA............................................................ 22 3 17 0.06 1 1 0 0
....................................................................................................CACAGTGAACCGGTCTCTTAAA............................................................ 22 3 20 0.05 1 1 0 0
.........................................................................................................GGAACCGGTCTCTTT.............................................................. 15 1 20 0.05 1 0 1 0

Anti-sense strand reads

AACGTCGAAGAGGAATACACTAATATAGAATGTTATTACCCGGAACAAGGACTCGACAACCTAAGCCCCGGCATCGTGACAGACTCTCCAAATGTAAAGAGTGTCACTTGGCCAGAGAAAAAGTCGACGAAGGACTGAAGAAAAATGAGTCCCATAATTATAAATAAATATAAAAGGTAATG
***********************************************..((((.((((((...(((((((...((((((..(((((((....)))))))))))))...)))))))...)))))).))))....************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:35 PM