ID:

rno-mir-124-3

 Coordinate:

chr3:176406205-176406291 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-44.1 -43.9 -43.9
mature
  1. chr15:47964350-47964370 +
  2. chr2:102311664-102311684 +
  3. chr3:176406257-176406277 +
star

Sense Strand Reads

CCGCAGCCCGGCCCCGACCCGGTCCAGCCGCTCGCCGCCCGCCGCAGCCCTGAGGGCCCCTCTGCGTGTTCACAGCGGACCTTGATTTAATGTCTATACAATTAAGGCACGCGGTGAATGCCAAGAGAGGCGCCTCCGCCGCTCCTTTCTCATGGAAATGGCCCGGGAGCCCGGCCGTCGCGGCGCC
***********************************........((.((...(((((((.((((..((((((((.(((..((((((((............))))))))..))).))))))))..)))).))).)))).)).))..........*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528817
Adult_testes		 GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP
......................................................................................................TAAGGCACGCGGTGAATGCCA................................................................ 21 0 3 43.00 129 124 5 0
....................................................................................................................AATGCCAAGAGAGGC........................................................ 15 0 7 34.43 241 241 0 0
......................................................................................................TAAGGCACGCGGTGAATGCCAA............................................................... 22 0 3 17.33 52 47 5 0
......................................................................................................TAAGGCACGCGGTGAATGCCAAT.............................................................. 23 1 3 13.00 39 18 21 0
......................................................................................................TAAGGCACGCGGTGAATGCCAAAA............................................................. 24 1 3 11.33 34 30 4 0
......................................................................................................TAAGGCACGCGGTGAATGC.................................................................. 19 0 3 10.33 31 31 0 0
......................................................................................................TAAGGCACGCGGTGAATGCCAT............................................................... 22 1 3 7.33 22 20 0 2
......................................................................................................TAAGGCACGCGGTGAATGCCAAA.............................................................. 23 1 3 5.00 15 12 3 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCATT.............................................................. 24 2 3 5.00 15 8 7 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAAT.............................................................. 24 1 3 4.33 13 5 8 0
......................................................................................................TAAGGCACGCGGTGAATGCC................................................................. 20 0 3 3.67 11 10 1 0
......................................................................................................TAAGGCACGCGGTGAATG................................................................... 18 0 3 3.67 11 11 0 0
......................................................................................................TAAGGCACGCGGTGAATGCCAATA............................................................. 24 1 3 2.67 8 3 5 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAA............................................................... 23 0 3 2.67 8 3 5 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAT............................................................... 23 1 3 2.33 7 3 4 0
.....................................................................................................ATAAGGCACGCGGTGAATGCCA................................................................ 22 1 3 1.67 5 5 0 0
......................................................................................................TAAGGCACGCGGTGAATGCCATT.............................................................. 23 2 3 1.33 4 2 2 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCATTT............................................................. 25 3 3 1.33 4 1 3 0
.......................................................................................................AAGGCACGCGGTGAATGCCAAT.............................................................. 22 1 3 1.00 3 3 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCA................................................................ 22 0 3 1.00 3 3 0 0
......................................................................................................TAAGGCACGCGGTGAATGCCAATT............................................................. 24 2 3 1.00 3 2 1 0
.......................................................................................................AAGGCACGCGGTGAATGCCA................................................................ 20 0 3 1.00 3 3 0 0
.......................................................................................................AAGGCACGCGGTGAATGC.................................................................. 18 0 3 1.00 3 3 0 0
.......................................................................................................AAGGCACGCGGTGAATGCCAAGA............................................................. 23 0 3 0.67 2 0 2 0
......................................................................................................TAAGGCACGCGGTGAATGCAAT............................................................... 22 2 3 0.67 2 0 2 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCATA.............................................................. 24 2 3 0.67 2 0 2 0
.....................................................................................................ATAAGGCACGCGGTGAATGCCAT............................................................... 23 2 3 0.67 2 1 1 0
......................................................................................................TTAGGCACGCGGTGAATGC.................................................................. 19 1 3 0.67 2 2 0 0
.....................................................................................................ATAAGGCACGCGGTGAATGCCAA............................................................... 23 1 3 0.67 2 2 0 0
......................................................................................................TAAGGCACGCGGTGAATGCCAAAT............................................................. 24 2 3 0.67 2 0 2 0
.......................................................................................................AAGGCACGCGGTGAATGCCAAAA............................................................. 23 1 3 0.67 2 2 0 0
......................................................................................................TAAGGCACGCGGTGAATGCCAAG.............................................................. 23 0 3 0.67 2 2 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAAA.............................................................. 24 1 3 0.67 2 2 0 0
......................................................................................................TAAGGCACGCGGTGAATGCCAAAAAA........................................................... 26 2 2 0.50 1 1 0 0
......................................................................................................TAAGGCACGCGGTAAATGCCAAT.............................................................. 23 2 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGGGGAATGCC................................................................. 20 1 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGGTGAATCCCA................................................................ 21 1 3 0.33 1 1 0 0
......................................................................................................AAAGGCACGCGGTGAATGCCA................................................................ 21 1 3 0.33 1 1 0 0
.............................................................................................................CGCGGTGAATGCCAA............................................................... 15 0 3 0.33 1 1 0 0
.......................................................................................................AAGGCACGCGGTGAATGCCTC............................................................... 21 2 3 0.33 1 1 0 0
.....................................................................................................TTAAGGCACGCGGTAAATGCCAAT.............................................................. 24 2 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGTTGAATG................................................................... 18 1 3 0.33 1 1 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCACA.............................................................. 24 2 3 0.33 1 0 1 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAATT............................................................. 25 2 3 0.33 1 1 0 0
......................................................................................................TAACGCACGCGGTGAATGCCAA............................................................... 22 1 3 0.33 1 0 1 0
.....................................................................................................TTAAGGCACGCGGTGAATGA.................................................................. 20 1 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGGTGAATTCCAA............................................................... 22 1 3 0.33 1 1 0 0
.....................................................................................................TTCAGGCACGCGGTGAATGCCAATT............................................................. 25 3 3 0.33 1 1 0 0
.......................................................................................................AAGGCACGCGGTGAATGCC................................................................. 19 0 3 0.33 1 1 0 0
.......................................................................................................AAGGCACGCGGTGAATGCCAA............................................................... 21 0 3 0.33 1 1 0 0
....................................................................................................ATTAAGGCACGCGGTGAATGCCA................................................................ 23 0 3 0.33 1 1 0 0
...........................................................................................................CACGCGGTGAATGCCAAT.............................................................. 18 1 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGGGGAATGC.................................................................. 19 1 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGTTGAATGCCAAC.............................................................. 23 2 3 0.33 1 1 0 0
......................................................................................................TACGGCACGCGGTGAATGCCAT............................................................... 22 2 3 0.33 1 0 0 1
.....................................................................................................TTAAGGCACGCGGTGAATGCCATTA............................................................. 25 2 3 0.33 1 0 1 0
......................................................................................................TAAGGCACGCGGTGAATGCTCA............................................................... 22 2 3 0.33 1 1 0 0
......................................................................................................GAAGGCACGCGGTGAATGCCA................................................................ 21 1 3 0.33 1 1 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAAAAT............................................................ 26 2 3 0.33 1 0 1 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAAAA............................................................. 25 1 3 0.33 1 0 1 0
......................................................................................................TAAGGCACGCGGTGAATGCTAACC............................................................. 24 3 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGGGGAATGCCAAT.............................................................. 23 2 3 0.33 1 1 0 0
.....................................................................................................ATAAGGCACGCGGTGAATGCCAAT.............................................................. 24 2 3 0.33 1 0 1 0
......................................................................................................TAAGGCACGCGGTAAATGCCAA............................................................... 22 1 3 0.33 1 1 0 0
.......................................................................................................AAGGCACGCGGTGAATGCCATT.............................................................. 22 2 3 0.33 1 1 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCC................................................................. 21 0 3 0.33 1 1 0 0
......................................................................................................TATGGCACGCGGTGAATGCCAT............................................................... 22 2 3 0.33 1 1 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAATAT............................................................ 26 2 3 0.33 1 0 1 0
......................................................................................................TAAGGCACGCGGTGAATGCCG................................................................ 21 1 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGGTGAATGA.................................................................. 19 1 3 0.33 1 1 0 0
......................................................................................................TGAGGCACGCGGTGAATGCCAA............................................................... 22 1 3 0.33 1 1 0 0
......................................................................................................TATGGCACTCGGTGAATGCCA................................................................ 21 2 4 0.25 1 1 0 0
.....................................................................................................ATAAGGCACGTGGTGAATGCCAAT.............................................................. 24 3 4 0.25 1 1 0 0
....................................................................................................................AATGCCAAGAGAGGCGTC..................................................... 18 1 5 0.20 1 1 0 0
..................................................................................................................TGAATGCCAAGAGAGG......................................................... 16 0 5 0.20 1 1 0 0
....................................................................................................................AATGCCAAGAGAGGCGT...................................................... 17 1 11 0.18 2 2 0 0
....................................................................................................................AATGCCAAGAGAGGCGA...................................................... 17 1 15 0.07 1 1 0 0
.....................................................................................................ATAAGGCACGCGGTG....................................................................... 15 1 20 0.05 1 1 0 0
..................................................................................................................TAAATGCCAAGAGAGGC........................................................ 17 1 20 0.05 1 1 0 0

Anti-sense strand reads

GGCGTCGGGCCGGGGCTGGGCCAGGTCGGCGAGCGGCGGGCGGCGTCGGGACTCCCGGGGAGACGCACAAGTGTCGCCTGGAACTAAATTACAGATATGTTAATTCCGTGCGCCACTTACGGTTCTCTCCGCGGAGGCGGCGAGGAAAGAGTACCTTTACCGGGCCCTCGGGCCGGCAGCGCCGCGG
***********************************........((.((...(((((((.((((..((((((((.(((..((((((((............))))))))..))).))))))))..)))).))).)))).)).))..........*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:44 PM