ID:

rno-mir-124-2

 Coordinate:

chr2:102311603-102311711 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-47.5 -47.1 -46.9
mature
  1. chr15:47964350-47964370 +
  2. chr2:102311664-102311684 +
  3. chr3:176406257-176406277 +
star

Sense Strand Reads

GAAGGGCAGAGAGAAAAGTATAGTAGTTGCAGTGAGTCAGTTGCTTCTAGATCAAGATCAGAGACTCTGCTCTCCGTGTTCACAGCGGACCTTGATTTAATGTCATACAATTAAGGCACGCGGTGAATGCCAAGAGCGGAGCCTACGGCTGCACTTGAAGGACATCAGAGAGATGTCAGAAAGGGTGGGGAGAAACAATTGCAGACTTC
***********************************.((...((.((((...(((((..(((((.(((((((((..((((((((.(((..((((((((...........))))))))..))).))))))))..))))))))).))....)))..)))))))))))...)).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528817
Adult_testes		 GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP
...............................................................................................................TAAGGCACGCGGTGAATGCCA............................................................................. 21 0 3 43.00 129 124 5 0
...............................................................................................................TAAGGCACGCGGTGAATGCCAA............................................................................ 22 0 3 17.33 52 47 5 0
...............................................................................................................TAAGGCACGCGGTGAATGCCAAT........................................................................... 23 1 3 13.00 39 18 21 0
...............................................................................................................TAAGGCACGCGGTGAATGCCAAAA.......................................................................... 24 1 3 11.33 34 30 4 0
...............................................................................................................TAAGGCACGCGGTGAATGC............................................................................... 19 0 3 10.33 31 31 0 0
...............................................................................................................TAAGGCACGCGGTGAATGCCAT............................................................................ 22 1 3 7.33 22 20 0 2
...............................................................................................................TAAGGCACGCGGTGAATGCCAAA........................................................................... 23 1 3 5.00 15 12 3 0
..............................................................................................................TTAAGGCACGCGGTGAATGCCATT........................................................................... 24 2 3 5.00 15 8 7 0
..............................................................................................................TTAAGGCACGCGGTGAATGCCAAT........................................................................... 24 1 3 4.33 13 5 8 0
...............................................................................................................TAAGGCACGCGGTGAATG................................................................................ 18 0 3 3.67 11 11 0 0
...............................................................................................................TAAGGCACGCGGTGAATGCC.............................................................................. 20 0 3 3.67 11 10 1 0
...............................................................................................................TAAGGCACGCGGTGAATGCCAATA.......................................................................... 24 1 3 2.67 8 3 5 0
..............................................................................................................TTAAGGCACGCGGTGAATGCCAA............................................................................ 23 0 3 2.67 8 3 5 0
..............................................................................................................TTAAGGCACGCGGTGAATGCCAT............................................................................ 23 1 3 2.33 7 3 4 0
..............................................................................................................ATAAGGCACGCGGTGAATGCCA............................................................................. 22 1 3 1.67 5 5 0 0
...............................................................................................................TAAGGCACGCGGTGAATGCCATT........................................................................... 23 2 3 1.33 4 2 2 0
..............................................................................................................TTAAGGCACGCGGTGAATGCCATTT.......................................................................... 25 3 3 1.33 4 1 3 0
...............................................................................................................TAAGGCACGCGGTGAATGCCAATT.......................................................................... 24 2 3 1.00 3 2 1 0
................................................................................................................AAGGCACGCGGTGAATGCCA............................................................................. 20 0 3 1.00 3 3 0 0
..............................................................................................................TTAAGGCACGCGGTGAATGCCA............................................................................. 22 0 3 1.00 3 3 0 0
.............................................................................................................................AATGCCAAGAGCGGA..................................................................... 15 0 1 1.00 1 1 0 0
................................................................................................................AAGGCACGCGGTGAATGC............................................................................... 18 0 3 1.00 3 3 0 0
................................................................................................................AAGGCACGCGGTGAATGCCAAT........................................................................... 22 1 3 1.00 3 3 0 0
..............................................................................................................TTAAGGCACGCGGTGAATGCCAAA........................................................................... 24 1 3 0.67 2 2 0 0
...............................................................................................................TAAGGCACGCGGTGAATGCCAAG........................................................................... 23 0 3 0.67 2 2 0 0
...............................................................................................................TAAGGCACGCGGTGAATGCCAAAT.......................................................................... 24 2 3 0.67 2 0 2 0
................................................................................................................AAGGCACGCGGTGAATGCCAAGA.......................................................................... 23 0 3 0.67 2 0 2 0
..............................................................................................................ATAAGGCACGCGGTGAATGCCAA............................................................................ 23 1 3 0.67 2 2 0 0
...............................................................................................................TAAGGCACGCGGTGAATGCAAT............................................................................ 22 2 3 0.67 2 0 2 0
...............................................................................................................TTAGGCACGCGGTGAATGC............................................................................... 19 1 3 0.67 2 2 0 0
..............................................................................................................ATAAGGCACGCGGTGAATGCCAT............................................................................ 23 2 3 0.67 2 1 1 0
..............................................................................................................TTAAGGCACGCGGTGAATGCCATA........................................................................... 24 2 3 0.67 2 0 2 0
................................................................................................................AAGGCACGCGGTGAATGCCAAAA.......................................................................... 23 1 3 0.67 2 2 0 0
...............................................................................................................TAAGGCACGCGGTAAATGCCAA............................................................................ 22 1 3 0.33 1 1 0 0
..............................................................................................................ATAAGGCACGCGGTGAATGCCAAT........................................................................... 24 2 3 0.33 1 0 1 0
..............................................................................................................TTAAGGCACGCGGTAAATGCCAAT........................................................................... 24 2 3 0.33 1 1 0 0
...............................................................................................................TAAGGCACGCGGTGAATTCCAA............................................................................ 22 1 3 0.33 1 1 0 0
....................................................................................................................CACGCGGTGAATGCCAAT........................................................................... 18 1 3 0.33 1 1 0 0
...............................................................................................................TAACGCACGCGGTGAATGCCAA............................................................................ 22 1 3 0.33 1 0 1 0
..............................................................................................................TTAAGGCACGCGGTGAATGCCACA........................................................................... 24 2 3 0.33 1 0 1 0
...............................................................................................................TAAGGCACGCGTTGAATG................................................................................ 18 1 3 0.33 1 1 0 0
................................................................................................................AAGGCACGCGGTGAATGCCTC............................................................................ 21 2 3 0.33 1 1 0 0
..............................................................................................................TTCAGGCACGCGGTGAATGCCAATT.......................................................................... 25 3 3 0.33 1 1 0 0
...............................................................................................................GAAGGCACGCGGTGAATGCCA............................................................................. 21 1 3 0.33 1 1 0 0
...............................................................................................................TAAGGCACGCGGTGAATCCCA............................................................................. 21 1 3 0.33 1 1 0 0
...............................................................................................................TAAGGCACGCGGTGAATGCTCA............................................................................ 22 2 3 0.33 1 1 0 0
..............................................................................................................TTAAGGCACGCGGTGAATGCCAATT.......................................................................... 25 2 3 0.33 1 1 0 0
...............................................................................................................TAAGGCACGCGGGGAATGCC.............................................................................. 20 1 3 0.33 1 1 0 0
...............................................................................................................TAAGGCACGCGGGGAATGC............................................................................... 19 1 3 0.33 1 1 0 0
.............................................................................................................ATTAAGGCACGCGGTGAATGCCA............................................................................. 23 0 3 0.33 1 1 0 0
..............................................................................................................TTAAGGCACGCGGTGAATGA............................................................................... 20 1 3 0.33 1 1 0 0
...............................................................................................................TAAGGCACGCGTTGAATGCCAAC........................................................................... 23 2 3 0.33 1 1 0 0
................................................................................................................AAGGCACGCGGTGAATGCC.............................................................................. 19 0 3 0.33 1 1 0 0
..............................................................................................................TTAAGGCACGCGGTGAATGCCAAAA.......................................................................... 25 1 3 0.33 1 0 1 0
...............................................................................................................TAAGGCACGCGGGGAATGCCAAT........................................................................... 23 2 3 0.33 1 1 0 0
................................................................................................................AAGGCACGCGGTGAATGCCAA............................................................................ 21 0 3 0.33 1 1 0 0
...............................................................................................................TAAGGCACGCGGTGAATGCTAACC.......................................................................... 24 3 3 0.33 1 1 0 0
..............................................................................................................TTAAGGCACGCGGTGAATGCC.............................................................................. 21 0 3 0.33 1 1 0 0
..............................................................................................................TTAAGGCACGCGGTGAATGCCAAAAT......................................................................... 26 2 3 0.33 1 0 1 0
...............................................................................................................AAAGGCACGCGGTGAATGCCA............................................................................. 21 1 3 0.33 1 1 0 0
..............................................................................................................TTAAGGCACGCGGTGAATGCCATTA.......................................................................... 25 2 3 0.33 1 0 1 0
..............................................................................................................TTAAGGCACGCGGTGAATGCCAATAT......................................................................... 26 2 3 0.33 1 0 1 0
...............................................................................................................TACGGCACGCGGTGAATGCCAT............................................................................ 22 2 3 0.33 1 0 0 1
...............................................................................................................TAAGGCACGCGGTGAATGA............................................................................... 19 1 3 0.33 1 1 0 0
...............................................................................................................TAAGGCACGCGGTGAATGCCG............................................................................. 21 1 3 0.33 1 1 0 0
......................................................................................................................CGCGGTGAATGCCAA............................................................................ 15 0 3 0.33 1 1 0 0
...............................................................................................................TGAGGCACGCGGTGAATGCCAA............................................................................ 22 1 3 0.33 1 1 0 0
...............................................................................................................TATGGCACGCGGTGAATGCCAT............................................................................ 22 2 3 0.33 1 1 0 0
...............................................................................................................TAAGGCACGCGGTAAATGCCAAT........................................................................... 23 2 3 0.33 1 1 0 0
................................................................................................................AAGGCACGCGGTGAATGCCATT........................................................................... 22 2 3 0.33 1 1 0 0
..............................................................................................................ATAAGGCACGTGGTGAATGCCAAT........................................................................... 24 3 4 0.25 1 1 0 0
...............................................................................................................TATGGCACTCGGTGAATGCCA............................................................................. 21 2 4 0.25 1 1 0 0
..............................................................................................................ATAAGGCACGCGGTG.................................................................................... 15 1 20 0.05 1 1 0 0

Anti-sense strand reads

CTTCCCGTCTCTCTTTTCATATCATCAACGTCACTCAGTCAACGAAGATCTAGTTCTAGTCTCTGAGACGAGAGGCACAAGTGTCGCCTGGAACTAAATTACAGTATGTTAATTCCGTGCGCCACTTACGGTTCTCGCCTCGGATGCCGACGTGAACTTCCTGTAGTCTCTCTACAGTCTTTCCCACCCCTCTTTGTTAACGTCTGAAG
***********************************.((...((.((((...(((((..(((((.(((((((((..((((((((.(((..((((((((...........))))))))..))).))))))))..))))))))).))....)))..)))))))))))...)).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:41 PM