ID:

rno-mir-124-1

 Coordinate:

chr15:47964298-47964382 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.5 -41.1 -41.1
mature
  1. chr15:47964350-47964370 +
  2. chr2:102311664-102311684 +
  3. chr3:176406257-176406277 +
star

Sense Strand Reads

CCTTCTTCCGATCTTTCTTTCCTTCCTTCCTTCTTCCTTCCTCAGGAGAAAGGCCTCTCTCTCCGTGTTCACAGCGGACCTTGATTTAAATGTCCATACAATTAAGGCACGCGGTGAATGCCAAGAATGGGGCTGTCTGAGCACCTTGGGTCCACGAGGGCCCGCCACGGAAGGATCGACTCAGC
***********************************....(((.((((((..((((((..(((..((((((((.(((..((((((((.............))))))))..))).))))))))..)))..)))))).))).....))).)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528817
Adult_testes		 GSM1528819
10dpp_testes		 GSM1528818
Adult_testes_Mili_IP
......................................................................................................TAAGGCACGCGGTGAATGCCA.............................................................. 21 0 3 43.00 129 124 5 0
......................................................................................................TAAGGCACGCGGTGAATGCCAA............................................................. 22 0 3 17.33 52 47 5 0
......................................................................................................TAAGGCACGCGGTGAATGCCAAT............................................................ 23 1 3 13.00 39 18 21 0
......................................................................................................TAAGGCACGCGGTGAATGCCAAAA........................................................... 24 1 3 11.33 34 30 4 0
......................................................................................................TAAGGCACGCGGTGAATGC................................................................ 19 0 3 10.33 31 31 0 0
......................................................................................................TAAGGCACGCGGTGAATGCCAAAAA.......................................................... 25 1 1 8.00 8 8 0 0
......................................................................................................TAAGGCACGCGGTGAATGCCAT............................................................. 22 1 3 7.33 22 20 0 2
......................................................................................................TAAGGCACGCGGTGAATGCCAAA............................................................ 23 1 3 5.00 15 12 3 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCATT............................................................ 24 2 3 5.00 15 8 7 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAAT............................................................ 24 1 3 4.33 13 5 8 0
......................................................................................................TAAGGCACGCGGTGAATG................................................................. 18 0 3 3.67 11 11 0 0
......................................................................................................TAAGGCACGCGGTGAATGCC............................................................... 20 0 3 3.67 11 10 1 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAA............................................................. 23 0 3 2.67 8 3 5 0
......................................................................................................TAAGGCACGCGGTGAATGCCAATA........................................................... 24 1 3 2.67 8 3 5 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAT............................................................. 23 1 3 2.33 7 3 4 0
.....................................................................................................ATAAGGCACGCGGTGAATGCCA.............................................................. 22 1 3 1.67 5 5 0 0
......................................................................................................TAAGGCACGCGGTGAATGCCATT............................................................ 23 2 3 1.33 4 2 2 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCATTT........................................................... 25 3 3 1.33 4 1 3 0
......................................................................................................TAAGGCACGCGGTGAATGCTTTGAA.......................................................... 25 3 1 1.00 1 1 0 0
.......................................................................................................AAGGCACGCGGTGAATGCCA.............................................................. 20 0 3 1.00 3 3 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCA.............................................................. 22 0 3 1.00 3 3 0 0
......................................................................................................TAAGGCACGCGGTGAATGCCAATT........................................................... 24 2 3 1.00 3 2 1 0
.......................................................................................................AAGGCACGCGGTGAATGC................................................................ 18 0 3 1.00 3 3 0 0
.......................................................................................................AAGGCACGCGGTGAATGCCAAT............................................................ 22 1 3 1.00 3 3 0 0
.....................................................................................................ATAAGGCACGCGGTGAATGCCAAAAA.......................................................... 26 2 1 1.00 1 1 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAATTTT......................................................... 27 3 1 1.00 1 1 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCATAGA.......................................................... 26 3 1 1.00 1 1 0 0
......................................................................................................TAAGGCACGCGGTGAATGCCAAG............................................................ 23 0 3 0.67 2 2 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAAA............................................................ 24 1 3 0.67 2 2 0 0
......................................................................................................TAAGGCACGCGGTGAATGCCAAAT........................................................... 24 2 3 0.67 2 0 2 0
.....................................................................................................ATAAGGCACGCGGTGAATGCCAT............................................................. 23 2 3 0.67 2 1 1 0
.....................................................................................................ATAAGGCACGCGGTGAATGCCAA............................................................. 23 1 3 0.67 2 2 0 0
......................................................................................................TAAGGCACGCGGTGAATGCAAT............................................................. 22 2 3 0.67 2 0 2 0
......................................................................................................TTAGGCACGCGGTGAATGC................................................................ 19 1 3 0.67 2 2 0 0
.......................................................................................................AAGGCACGCGGTGAATGCCAAGA........................................................... 23 0 3 0.67 2 0 2 0
.......................................................................................................AAGGCACGCGGTGAATGCCAAAA........................................................... 23 1 3 0.67 2 2 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCATA............................................................ 24 2 3 0.67 2 0 2 0
......................................................................................................TAAGGCACGCGGTGAATGCCAAAAAA......................................................... 26 2 2 0.50 1 1 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCATTA........................................................... 25 2 3 0.33 1 0 1 0
......................................................................................................TAAGGCACGCGGGGAATGCC............................................................... 20 1 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGGGGAATGC................................................................ 19 1 3 0.33 1 1 0 0
.....................................................................................................TTAAGGCACGCGGTAAATGCCAAT............................................................ 24 2 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGGTAAATGCCAA............................................................. 22 1 3 0.33 1 1 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAATAT.......................................................... 26 2 3 0.33 1 0 1 0
.....................................................................................................TTAAGGCACGCGGTGAATGCC............................................................... 21 0 3 0.33 1 1 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAATT........................................................... 25 2 3 0.33 1 1 0 0
.......................................................................................................AAGGCACGCGGTGAATGCCAA............................................................. 21 0 3 0.33 1 1 0 0
......................................................................................................GAAGGCACGCGGTGAATGCCA.............................................................. 21 1 3 0.33 1 1 0 0
......................................................................................................TGAGGCACGCGGTGAATGCCAA............................................................. 22 1 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGTTGAATG................................................................. 18 1 3 0.33 1 1 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAAAAT.......................................................... 26 2 3 0.33 1 0 1 0
......................................................................................................AAAGGCACGCGGTGAATGCCA.............................................................. 21 1 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGGTGAATGCTCA............................................................. 22 2 3 0.33 1 1 0 0
.......................................................................................................AAGGCACGCGGTGAATGCCATT............................................................ 22 2 3 0.33 1 1 0 0
......................................................................................................TACGGCACGCGGTGAATGCCAT............................................................. 22 2 3 0.33 1 0 0 1
......................................................................................................TAAGGCACGCGGTGAATGCTAACC........................................................... 24 3 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGTTGAATGCCAAC............................................................ 23 2 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGGTGAATCCCA.............................................................. 21 1 3 0.33 1 1 0 0
.....................................................................................................ATAAGGCACGCGGTGAATGCCAAT............................................................ 24 2 3 0.33 1 0 1 0
......................................................................................................TAAGGCACGCGGGGAATGCCAAT............................................................ 23 2 3 0.33 1 1 0 0
...........................................................................................................CACGCGGTGAATGCCAAT............................................................ 18 1 3 0.33 1 1 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGA................................................................ 20 1 3 0.33 1 1 0 0
.......................................................................................................AAGGCACGCGGTGAATGCCTC............................................................. 21 2 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGGTGAATGCCG.............................................................. 21 1 3 0.33 1 1 0 0
....................................................................................................ATTAAGGCACGCGGTGAATGCCA.............................................................. 23 0 3 0.33 1 1 0 0
......................................................................................................TAACGCACGCGGTGAATGCCAA............................................................. 22 1 3 0.33 1 0 1 0
......................................................................................................TAAGGCACGCGGTGAATTCCAA............................................................. 22 1 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGGTGAATGA................................................................ 19 1 3 0.33 1 1 0 0
......................................................................................................TATGGCACGCGGTGAATGCCAT............................................................. 22 2 3 0.33 1 1 0 0
......................................................................................................TAAGGCACGCGGTAAATGCCAAT............................................................ 23 2 3 0.33 1 1 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCACA............................................................ 24 2 3 0.33 1 0 1 0
.....................................................................................................TTCAGGCACGCGGTGAATGCCAATT........................................................... 25 3 3 0.33 1 1 0 0
.....................................................................................................TTAAGGCACGCGGTGAATGCCAAAA........................................................... 25 1 3 0.33 1 0 1 0
.............................................................................................................CGCGGTGAATGCCAA............................................................. 15 0 3 0.33 1 1 0 0
.......................................................................................................AAGGCACGCGGTGAATGCC............................................................... 19 0 3 0.33 1 1 0 0
......................................................................................................TATGGCACTCGGTGAATGCCA.............................................................. 21 2 4 0.25 1 1 0 0
.....................................................................................................ATAAGGCACGTGGTGAATGCCAAT............................................................ 24 3 4 0.25 1 1 0 0
.....................................................................................................ATAAGGCACGCGGTG..................................................................... 15 1 20 0.05 1 1 0 0

Anti-sense strand reads

GGAAGAAGGCTAGAAAGAAAGGAAGGAAGGAAGAAGGAAGGAGTCCTCTTTCCGGAGAGAGAGGCACAAGTGTCGCCTGGAACTAAATTTACAGGTATGTTAATTCCGTGCGCCACTTACGGTTCTTACCCCGACAGACTCGTGGAACCCAGGTGCTCCCGGGCGGTGCCTTCCTAGCTGAGTCG
***********************************....(((.((((((..((((((..(((..((((((((.(((..((((((((.............))))))))..))).))))))))..)))..)))))).))).....))).)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 04/30/2015 at 05:36 PM