ID:

mml-mir-99a

Coordinate:

chr3:30457833-30457913 -

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.3 -45.1 -45.0

Sense Strand Reads

AGATATTTACAACAAATTTTATATTAATAGGGAGCCCATGCAAGATGTTGCCCATTGGCATAAACCCGTAGATCCGATCTTGTGGTGAAGTGGACCGCACAAGCTCGCTTCTATGGGTCTGTGTCAGTGTGGTAATCTGACAAAATGCTATACACAGTGCCGTTCAATAATAGTTCAGTAA

***********************************************(((((((((((((((.(((((((((..(((.((((((.((........)))))))).)))..))))))))).)))))))))).)))))..********************************************
Read size # Mismatch Hit Count Total Norm Total SRR116841

prostate
SRR116843

cortex
SRR116840

epididymis
SRR116842

seminal vesicle
SRR116844

epididymis
SRR116845

epididymis
SRR116839

testes
..............................................................AACCCGTAGATCCGATCTTGT.................................................................................................. 21 0 1 29208.00 29208 9962 7577 7261 4027 2 0 379
..............................................................AACCCGTAGATCCGATCTTGTG................................................................................................. 22 0 1 22216.00 22216 7645 6116 4672 3541 0 0 242
..............................................................AACCCGTAGATCCGATCTTGTATC............................................................................................... 24 3 1 10560.00 10560 0 0 0 0 5866 4694 0
..............................................................AACCCGTAGATCCGATCTTGTGA................................................................................................ 23 1 1 8024.00 8024 3143 1807 1625 1343 17 7 82
..............................................................AACCCGTAGATCCGATCTTGTGT................................................................................................ 23 1 1 3873.00 3873 1516 738 1043 505 0 0 71
..............................................................AACCCGTAGATCCGATCTTTT.................................................................................................. 21 1 1 2251.00 2251 1079 514 600 30 0 0 28
..............................................................AACCCGTAGATCCGATCTTG................................................................................................... 20 0 1 1867.00 1867 528 340 732 253 0 0 14
..............................................................AACCCGTAGATCCGATCTTGTGATC.............................................................................................. 25 2 1 1718.00 1718 0 0 0 0 803 915 0
..............................................................AACCCGTAGATCCGATCTTGTT................................................................................................. 22 1 1 1325.00 1325 515 463 304 23 0 0 20
..............................................................AACCCGTAGATCCGATCTTTTG................................................................................................. 22 1 1 1152.00 1152 578 313 233 11 0 0 17
.............................................................AAACCCGTAGATCCGATCTTGT.................................................................................................. 22 0 1 1150.00 1150 401 372 227 141 0 0 9
..............................................................AACCCGTAGATCCGATCTTGATC................................................................................................ 23 3 1 1042.00 1042 0 0 0 0 494 548 0
..............................................................AACCCGTAGATCCGATCTT.................................................................................................... 19 0 1 967.00 967 413 146 244 155 0 0 9
..............................................................GACCCGTAGATCCGATCTTGTG................................................................................................. 22 1 1 694.00 694 59 591 27 16 0 0 1
..............................................................GACCCGTAGATCCGATCTTGT.................................................................................................. 21 1 1 524.00 524 64 423 22 14 0 0 1
..............................................................AACCCGTAGATCCGATC...................................................................................................... 17 0 1 443.00 443 171 54 83 70 51 11 3
..............................................................AACCCGTAGATCCGATCT..................................................................................................... 18 0 1 394.00 394 194 42 90 64 1 0 3
..............................................................AACCCGTAGATCCGATCTTTTT................................................................................................. 22 2 1 369.00 369 192 71 101 2 0 0 3
..............................................................AACCCGTAGATCCGATCTTTTGA................................................................................................ 23 2 1 358.00 358 187 91 69 7 0 0 4
..............................................................AACCCGTAGATCCGATCTTGTA................................................................................................. 22 1 1 341.00 341 135 48 91 54 12 1 0
..............................................................AACCCGTAGATCCGATCTTGTGAA............................................................................................... 24 2 1 316.00 316 115 82 69 44 2 1 3
.............................................................AAACCCGTAGATCCGATCTTGTATC............................................................................................... 25 3 1 273.00 273 0 0 0 0 136 137 0
..............................................................AACCCGTAGATCCGATCTTTTGT................................................................................................ 23 2 1 193.00 193 110 29 49 2 0 0 3
..............................................................AACCCGTAGATCCGATCTTT................................................................................................... 20 1 1 186.00 186 70 24 84 5 0 0 3
..............................................................AACCCGTAGATCCGATCTTGTAA................................................................................................ 23 2 1 185.00 185 70 53 30 32 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTTT................................................................................................ 23 2 1 182.00 182 88 37 48 4 0 0 5
..............................................................AACCCGTAGCTCCGATCTTGT.................................................................................................. 21 1 1 157.00 157 89 38 26 4 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTTA................................................................................................ 23 2 1 125.00 125 61 36 26 2 0 0 0
..............................................................AACCCGTAGATCCGATCTTGA.................................................................................................. 21 1 1 123.00 123 41 16 41 16 7 2 0
..............................................................AACCCGTAGATCCGA........................................................................................................ 15 0 2 105.50 211 96 30 22 54 7 1 1
..............................................................AACCCGTAGATCCGAT....................................................................................................... 16 0 1 99.00 99 57 2 22 18 0 0 0
..............................................................GACCCGTAGATCCGATCTTGTGA................................................................................................ 23 2 1 93.00 93 6 78 5 3 0 0 1
...................................................................................................CAAGCTCGCTTCTATGGGTCTGT........................................................... 23 0 1 93.00 93 27 49 4 13 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTGAAA.............................................................................................. 25 3 2 78.50 157 56 39 35 26 1 0 0
.............................................................AAACCCGTAGATCCGATCTTG................................................................................................... 21 0 1 75.00 75 22 13 25 11 0 0 4
...................................................................................................CAAGCTCGCTTCTATGGGTCTGA........................................................... 23 1 1 72.00 72 23 27 13 9 0 0 0
.............................................................AAACCCGTAGATCCGATCTTTT.................................................................................................. 22 1 1 61.00 61 21 20 18 1 0 0 1
..............................................................AACCCGTCGATCCGATCTTGT.................................................................................................. 21 1 1 59.00 59 23 7 17 12 0 0 0
..............................................................AACCCGTAGATCCGATCA..................................................................................................... 18 1 1 59.00 59 35 2 11 11 0 0 0
..............................................................AACCCGTAGATTCGATCTTGT.................................................................................................. 21 1 1 58.00 58 15 19 14 9 0 0 1
...................................................................................................CAAGCTCGCTTCTATGGGTCTG............................................................ 22 0 1 56.00 56 9 32 6 8 0 0 1
..............................................................AACCCGTAGATCCGATCTTTTGATC.............................................................................................. 25 3 1 55.00 55 0 0 0 0 26 29 0
.............................................................AAACCCGTAGATCCGATCTTGTG................................................................................................. 23 0 1 55.00 55 27 17 4 7 0 0 0
..............................................................AACCCGTAGATCCTATCTTGT.................................................................................................. 21 1 1 50.00 50 15 22 11 2 0 0 0
..............................................................GACCCGTAGATCCGATCTTTTG................................................................................................. 22 2 1 50.00 50 6 43 1 0 0 0 0
..............................................................GACCCGTAGATCCGATCTTGTT................................................................................................. 22 2 1 49.00 49 3 42 4 0 0 0 0
..............................................................AACCCGTAGCTCCGATCTTGTG................................................................................................. 22 1 1 48.00 48 19 14 13 2 0 0 0
..............................................................AACCCGTAGATCCGATATTGT.................................................................................................. 21 1 1 48.00 48 21 12 9 5 0 0 1
..............................................................GACCCGTAGATCCGATCTTTT.................................................................................................. 21 2 1 46.00 46 5 35 6 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTCTC............................................................................................... 24 3 1 44.00 44 0 0 0 0 28 16 0
..............................................................AACCCGTAGATCTGATCTTGT.................................................................................................. 21 1 1 43.00 43 9 10 15 8 0 0 1
..............................................................AACCCGTAGATCCGATCTTGTATT............................................................................................... 24 2 1 38.00 38 0 0 0 0 18 20 0
.............................................................AGACCCGTAGATCCGATCTTGT.................................................................................................. 22 1 1 37.00 37 4 30 1 2 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTAT................................................................................................ 23 2 1 36.00 36 6 2 6 2 13 6 1
..............................................................AACCCGTAGATCCGATCTTGTGAT............................................................................................... 24 1 1 32.00 32 5 3 3 2 11 8 0
..............................................................AACCCGTAGATCCGATCTTTTTT................................................................................................ 23 3 2 30.50 61 31 5 25 0 0 0 0
..............................................................AACCCGTAGATCCGCTCTTGT.................................................................................................. 21 1 1 30.00 30 6 11 8 5 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTGTTC.............................................................................................. 25 2 1 30.00 30 0 0 0 0 19 11 0
..............................................................AACCCGTAGATCCGCTCTTGTG................................................................................................. 22 1 1 30.00 30 9 6 9 6 0 0 0
..............................................................AACCCGTAGCTCCGATCTTTT.................................................................................................. 21 2 1 30.00 30 10 10 9 1 0 0 0
..............................................................AACCCGTAGATCCGATTTTGT.................................................................................................. 21 1 1 29.00 29 13 7 6 3 0 0 0
..............................................................AACCCGTAGATCCGATCTTCTGATC.............................................................................................. 25 3 1 29.00 29 0 0 0 0 5 24 0
..............................................................AACCCGTAGATCCGATCTTGTGTA............................................................................................... 24 2 1 28.00 28 9 4 4 6 3 1 1
.............................................................AAACCCGTAGATCCGATCTTGATC................................................................................................ 24 3 1 28.00 28 0 0 0 0 10 18 0
..............................................................AACCCGTCGATCCGATCTTGTG................................................................................................. 22 1 1 28.00 28 9 3 9 5 0 0 2
..............................................................GACCCGTAGATCCGATCTTG................................................................................................... 20 1 1 28.00 28 3 21 3 1 0 0 0
..............................................................AACCCGTAGATCTGATCTTGTGATC.............................................................................................. 25 3 1 27.00 27 0 0 0 0 18 9 0
..............................................................AACCCGTAGATGCGATCTTGT.................................................................................................. 21 1 1 27.00 27 0 26 1 0 0 0 0
..............................................................AACCCGTAGATACGATCTTGT.................................................................................................. 21 1 1 27.00 27 3 18 4 2 0 0 0
..............................................................AACCCGTAGATCCTATCTTTT.................................................................................................. 21 2 1 26.00 26 9 5 12 0 0 0 0
..............................................................AACCCGTAGATCTGATCTTGTG................................................................................................. 22 1 1 25.00 25 10 6 4 5 0 0 0
..............................................................AACCCGTATATCCGATCTTGTGATC.............................................................................................. 25 3 1 25.00 25 0 0 0 0 11 14 0
..............................................................AACCCGTAGATCCGATCTTTTA................................................................................................. 22 2 1 25.00 25 15 0 8 0 1 0 1
..............................................................GACCCGTAGATCCGATCTT.................................................................................................... 19 1 1 24.00 24 5 12 5 1 0 0 1
..............................................................AACCCGTAGATCCGATCCTGT.................................................................................................. 21 1 1 24.00 24 8 9 4 3 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTGC................................................................................................ 23 1 1 24.00 24 8 3 7 5 0 0 1
..............................................................AACCCGTAGCTCCGATCTTGTGT................................................................................................ 23 2 1 24.00 24 15 6 2 1 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTTC................................................................................................ 23 2 1 23.00 23 0 0 0 0 7 16 0
..............................................................AACCCGTAGATCCGATCTTGTTTC............................................................................................... 24 3 1 23.00 23 0 0 0 0 15 8 0
..............................................................AACCCGTAGATTCGATCTTGTG................................................................................................. 22 1 1 23.00 23 5 11 4 3 0 0 0
..............................................................AACCCGTAGATCCTATCTTGTT................................................................................................. 22 2 1 23.00 23 3 18 2 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTTTTA................................................................................................ 23 3 2 22.00 44 28 7 9 0 0 0 0
..............................................................AACCCGTAGATCCGATCCTGTG................................................................................................. 22 1 1 21.00 21 9 7 4 1 0 0 0
..............................................................AACCCTTAGATCCGATCTTGTGATC.............................................................................................. 25 3 1 21.00 21 0 0 0 0 11 10 0
..............................................................GACCCGTAGATCCGATCTTGTGT................................................................................................ 23 2 1 20.00 20 3 15 2 0 0 0 0
..............................................................AACCTGTAGATCCGATCTTGT.................................................................................................. 21 1 1 20.00 20 6 5 2 7 0 0 0
..............................................................AACCCGTAGATCCGGTCTTGT.................................................................................................. 21 1 1 20.00 20 10 3 5 2 0 0 0
...................................................................................................CAAGCTCGCTTCTATGGGTCTGATC......................................................... 25 3 1 20.00 20 0 0 0 0 15 5 0
..............................................................AACCCGTAGATCCGATCTTA................................................................................................... 20 1 1 19.00 19 8 2 4 5 0 0 0
..............................................................AACCCTTAGATCCGATCTTGT.................................................................................................. 21 1 1 19.00 19 6 6 2 3 0 0 2
..............................................................AACCCGTAGATCCGATATTGTG................................................................................................. 22 1 1 18.00 18 4 8 5 0 0 0 1
...............................................................ACCCGTAGATCCGATCTTGTATC............................................................................................... 23 3 1 18.00 18 0 0 0 0 14 4 0
..............................................................AACCCGTAGATCCGATCTTGTAATC.............................................................................................. 25 3 1 18.00 18 0 0 0 0 10 8 0
..............................................................AACCCGCAGATCCGATCTTGT.................................................................................................. 21 1 1 18.00 18 2 9 5 2 0 0 0
..............................................................AACCCGTAGATCCTATCTTGTGATC.............................................................................................. 25 3 1 18.00 18 0 0 0 0 12 6 0
..............................................................AACCCGTAGATCCTATCTTGTG................................................................................................. 22 1 1 17.00 17 7 5 4 1 0 0 0
..............................................................AACCCGTAGATCTGATCTTGTGA................................................................................................ 23 2 1 17.00 17 5 2 5 5 0 0 0
..............................................................AACCCGTAGATCCGATA...................................................................................................... 17 1 2 17.00 34 20 0 5 8 1 0 0
..............................................................AACCCGTAGATCCGATCTTGTACC............................................................................................... 24 3 1 16.00 16 0 0 0 0 9 7 0
..............................................................AACCCGTAGATCCGACCTTGTG................................................................................................. 22 1 2 16.00 32 12 7 4 9 0 0 0
..............................................................AACCCGTAGATCCGATCTTGAA................................................................................................. 22 2 1 16.00 16 4 4 7 1 0 0 0
..............................................................AACCCATAGATCCGATCTTGT.................................................................................................. 21 1 1 16.00 16 7 6 1 2 0 0 0
..............................................................AACCCGTAGATCCGATCTTATC................................................................................................. 22 2 1 16.00 16 0 0 0 0 9 7 0
..............................................................AACCCGTAGATCCGATCAA.................................................................................................... 19 2 3 15.33 46 29 1 13 3 0 0 0
..............................................................AACCCGTAGATCCGATCTTGC.................................................................................................. 21 1 1 15.00 15 3 2 5 5 0 0 0
..............................................................AACCCGTAGATCCGACCTTGT.................................................................................................. 21 1 2 15.00 30 10 9 3 6 0 0 2
..............................................................AACCCGTAGATCCGATCTCGT.................................................................................................. 21 1 1 15.00 15 3 4 5 3 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTGTT............................................................................................... 24 1 1 15.00 15 9 2 3 1 0 0 0
............................................................AAAACCCGTAGATCCGATCTTGT.................................................................................................. 23 1 1 14.00 14 3 8 3 0 0 0 0
..............................................................AACCCGTATATCCGATCTTGT.................................................................................................. 21 1 1 14.00 14 2 4 5 3 0 0 0
..............................................................AACCCGTAGATCCGATCTTGGG................................................................................................. 22 1 1 14.00 14 3 3 2 6 0 0 0
..............................................................AACCCGTAGATACGATCTTGTG................................................................................................. 22 1 1 13.00 13 2 9 1 1 0 0 0
.............................................................AAACCCGTAGATCCGATCTT.................................................................................................... 20 0 1 13.00 13 4 1 8 0 0 0 0
..............................................................AACCCATAGATCCGATCTTGTG................................................................................................. 22 1 1 13.00 13 3 3 3 3 0 0 1
.............................................................AAACCCGTAGATCCGATCTTGTA................................................................................................. 23 1 1 13.00 13 6 2 3 2 0 0 0
..............................................................AACCCGTAGCTCCGATCTTGTGA................................................................................................ 23 2 1 13.00 13 5 5 2 1 0 0 0
..............................................................AACCTGTAGATCCGATCTTGTG................................................................................................. 22 1 1 13.00 13 4 5 1 3 0 0 0
..............................................................AACCCCTAGATCCGATCTTGT.................................................................................................. 21 1 1 13.00 13 5 1 2 2 0 0 3
....................................................................................................AAGCTCGCTTCTATGGGTCTGT........................................................... 22 0 1 12.00 12 5 3 1 3 0 0 0
..............................................................AACCCGTGGATCCGATCTTGT.................................................................................................. 21 1 1 12.00 12 2 4 3 2 0 0 1
..............................................................AGCCCGTAGATCCGATCTTGTG................................................................................................. 22 1 1 12.00 12 6 2 2 1 0 0 1
..............................................................AACCCGTAGATCCGATCTGATC................................................................................................. 22 3 1 12.00 12 0 0 0 0 4 8 0
..............................................................AGCCCGTAGATCCGATCTTGT.................................................................................................. 21 1 1 11.00 11 4 3 3 1 0 0 0
..............................................................AACCCGTAGATCCGATCTA.................................................................................................... 19 1 1 11.00 11 8 0 1 2 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTGCTC.............................................................................................. 25 2 1 11.00 11 0 0 0 0 4 7 0
..............................................................AACCCGTAGATGCGATCTTGTG................................................................................................. 22 1 1 11.00 11 0 11 0 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTGTAA.............................................................................................. 25 3 2 11.00 22 9 3 8 2 0 0 0
..............................................................AACCCGTAGATCCGATATTTT.................................................................................................. 21 2 1 11.00 11 8 0 2 0 0 0 1
..............................................................AACCCGTAGATCCGATCTTGTGGAAC............................................................................................. 26 3 2 11.00 22 11 5 2 4 0 0 0
..............................................................AACCCGTAGACCCGATCTTGTGA................................................................................................ 23 2 1 10.00 10 4 0 4 0 0 0 2
..............................................................AACCCGTACATCCGATCTTGT.................................................................................................. 21 1 1 10.00 10 3 4 2 1 0 0 0
..............................................................AACCCGCAGATCCGATCTTGTG................................................................................................. 22 1 1 10.00 10 1 5 4 0 0 0 0
..............................................................ACCCCGTAGATCCGATCTTGT.................................................................................................. 21 1 1 10.00 10 7 2 1 0 0 0 0
..............................................................AACCCGTAGACCCGATCTTGTG................................................................................................. 22 1 1 10.00 10 0 5 2 2 0 0 1
............................................................AAAACCCGTAGATCCGATCTTGTG................................................................................................. 24 1 1 9.00 9 1 3 3 2 0 0 0
...................................................................................................CAAGCTCGCTTCTATGGGTCT............................................................. 21 0 1 9.00 9 3 2 3 0 0 0 1
..............................................................AACCCGTAGGTCCGATCTTGTG................................................................................................. 22 1 1 9.00 9 1 2 4 2 0 0 0
..............................................................AATCCGTAGATCCGATCTTGT.................................................................................................. 21 1 1 9.00 9 1 2 3 3 0 0 0
..............................................................AACCCGTAGATCCGATCTTCT.................................................................................................. 21 1 1 9.00 9 3 1 3 2 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTGAAT.............................................................................................. 25 3 1 9.00 9 1 0 1 0 5 2 0
..............................................................AACCTGTAGATCCGATCTTGTGATC.............................................................................................. 25 3 1 9.00 9 0 0 0 0 4 5 0
..............................................................AACCCGTAGATCCGATCTTGCG................................................................................................. 22 1 1 9.00 9 1 4 2 2 0 0 0
..............................................................AACCCGTAGATCTGATCTTGTGT................................................................................................ 23 2 1 9.00 9 4 0 1 3 0 0 1
..............................................................AACCCGTAGATTCGATCTTGTGA................................................................................................ 23 2 1 9.00 9 4 3 1 0 0 0 1
..............................................................AACCCGTAGATCCGATCTTGTGAAAA............................................................................................. 26 3 1 9.00 9 7 2 0 0 0 0 0
..............................................................AACCCGTAGGTCCGATCTTGT.................................................................................................. 21 1 1 9.00 9 5 2 1 1 0 0 0
..............................................................AACCCGTAGACCCGATCTTGT.................................................................................................. 21 1 1 9.00 9 4 2 2 0 0 0 1
..............................................................AACCCGTAGATCCGACCTTGTGATC.............................................................................................. 25 3 2 9.00 18 0 0 0 0 13 5 0
.............................................................AAACCCGTAGATCCGATCTTGTAA................................................................................................ 24 2 1 8.00 8 4 0 2 0 0 0 2
...................................................................................................CAAGCTCGCTTCTATGGGTCTGTT.......................................................... 24 1 1 8.00 8 3 4 0 1 0 0 0
..............................................................AACCCGTAGATCCAATCTTGTG................................................................................................. 22 1 1 8.00 8 1 4 1 2 0 0 0
..............................................................AACCTGTAGATCCGATCTTGTGA................................................................................................ 23 2 1 8.00 8 3 3 2 0 0 0 0
.............................................................AAACCCGTAGATCCGATCT..................................................................................................... 19 0 1 8.00 8 4 2 1 1 0 0 0
...................................................................................................CAAGCTCGCTTCTATGGGTCTGTA.......................................................... 24 1 1 8.00 8 2 3 2 1 0 0 0
..............................................................AACCCGTAGATCCGATCTTGGGATC.............................................................................................. 25 3 1 8.00 8 0 0 0 0 5 3 0
..............................................................AACCCGTATATCCGATCTTGTG................................................................................................. 22 1 1 8.00 8 1 2 3 2 0 0 0
..............................................................AACCCGTAGATCCGGTCTTGTG................................................................................................. 22 1 1 8.00 8 2 3 1 2 0 0 0
.............................................................AAACCCGTAGATCCGATCTTGTGA................................................................................................ 24 1 1 8.00 8 0 3 3 2 0 0 0
.............................................................AGACCCGTAGATCCGATCTTTT.................................................................................................. 22 2 1 7.00 7 0 7 0 0 0 0 0
..............................................................GACCCGTAGCTCCGATCTTGT.................................................................................................. 21 2 1 7.00 7 0 7 0 0 0 0 0
..............................................................AATCCGTAGATCCGATCTTGTG................................................................................................. 22 1 1 7.00 7 5 0 1 1 0 0 0
..............................................................AACCCGTAGCTCCGATCTTG................................................................................................... 20 1 1 7.00 7 3 0 4 0 0 0 0
..............................................................GACCCGTAGATCCGATCTTTTGA................................................................................................ 23 3 1 7.00 7 0 6 1 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTGG.................................................................................................. 21 1 1 7.00 7 2 1 1 2 0 0 1
..............................................................AACCCGTAGATCCGCTCTTTT.................................................................................................. 21 2 1 7.00 7 1 3 3 0 0 0 0
.............................................................AAACCCGTAGATCCGATC...................................................................................................... 18 0 1 7.00 7 2 3 1 0 1 0 0
..............................................................AACCCGTAGATCCGATCTTGAG................................................................................................. 22 1 1 7.00 7 3 2 1 1 0 0 0
.............................................................AAACCCGTAGATCCGATCTTT................................................................................................... 21 1 1 7.00 7 2 1 3 0 0 0 1
..............................................................AACCCGTAGATCCGATCTTGTGG................................................................................................ 23 0 1 7.00 7 3 2 1 1 0 0 0
..............................................................AACTCGTAGATCCGATCTTGT.................................................................................................. 21 1 1 7.00 7 3 0 1 2 0 0 1
..............................................................AACCCGTAGATCCGATCATC................................................................................................... 20 2 2 6.50 13 0 0 0 0 13 0 0
..............................................................GACCCGTAGATCCGATCTTTTT................................................................................................. 22 3 2 6.50 13 3 9 1 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTTTGAA............................................................................................... 24 3 2 6.50 13 7 3 3 0 0 0 0
...............................................................ACCCGTAGATCCGATCTTGT.................................................................................................. 20 0 1 6.00 6 1 2 0 3 0 0 0
...................................................................................................CAAGCTCGCTTCTATGGGTCTGTATC........................................................ 26 1 1 6.00 6 0 0 0 0 2 4 0
..............................................................AACCCGTAGATCAGATCTTGT.................................................................................................. 21 1 1 6.00 6 3 2 0 0 0 0 1
..............................................................GACCCGTAGATCCGATC...................................................................................................... 17 1 1 6.00 6 3 1 1 0 0 0 1
..............................................................AACCCGTAGATCCGATCTCGTG................................................................................................. 22 1 1 6.00 6 3 2 1 0 0 0 0
..............................................................AACCCGAAGATCCGATCTTGTG................................................................................................. 22 1 1 6.00 6 1 2 2 1 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTGCGGAC............................................................................................ 27 3 1 6.00 6 1 1 3 1 0 0 0
..............................................................AACCCGTAGATCCGCTCTTGTGATC.............................................................................................. 25 3 1 6.00 6 0 0 0 0 2 4 0
..............................................................AACCCGTAGATCCGATTTTGTG................................................................................................. 22 1 1 6.00 6 1 1 0 4 0 0 0
..............................................................AACCCCTAGATCCGATCTTGTG................................................................................................. 22 1 1 6.00 6 1 1 0 1 0 0 3
..............................................................AGCCCGTAGATCCGATCTTGTGA................................................................................................ 23 2 1 6.00 6 3 2 1 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTGAAC.............................................................................................. 25 3 1 6.00 6 0 0 0 1 2 3 0
..............................................................AACCCTTAGATCCGATCTTGTG................................................................................................. 22 1 1 6.00 6 0 3 0 2 0 0 1
..............................................................AACCCGTACATCCGATCTTGTGATC.............................................................................................. 25 3 1 6.00 6 0 0 0 0 3 3 0
..............................................................AACCCGTATATCCGATCTTGTGA................................................................................................ 23 2 1 6.00 6 0 1 2 2 0 1 0
..............................................................AACCCGTAGATCCGATTTTGTGA................................................................................................ 23 2 1 6.00 6 0 2 0 4 0 0 0
..............................................................AACCCGTAGATCCGATCTTCTG................................................................................................. 22 1 1 6.00 6 1 4 0 1 0 0 0
..............................................................AACTCGTAGATCCGATCTTGTG................................................................................................. 22 1 1 6.00 6 2 1 0 3 0 0 0
..............................................................GACCCGTAGATCCGATCT..................................................................................................... 18 1 1 6.00 6 0 5 1 0 0 0 0
..............................................................AACCCGTAGATCCGCTCTTGTGT................................................................................................ 23 2 1 6.00 6 3 2 1 0 0 0 0
............................................................AAAACCCGTAGATCCGATCTTGTGA................................................................................................ 25 2 1 6.00 6 3 2 1 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTC................................................................................................. 22 1 1 6.00 6 2 3 1 0 0 0 0
..............................................................AACCCGTAGTTCCGATCTTGT.................................................................................................. 21 1 1 6.00 6 0 3 1 1 0 0 1
..............................................................CACCCGTAGATCCGATCTTGT.................................................................................................. 21 1 1 6.00 6 0 0 1 5 0 0 0
..............................................................AACCCGTAGATCCGACCTTGTGA................................................................................................ 23 2 2 5.50 11 3 1 2 3 0 0 2
..............................................................AACCCGTAGATCCGATCTTGTTTT............................................................................................... 24 2 1 5.00 5 2 0 0 0 3 0 0
..............................................................AACCCGTAGATCCGGTCTTTT.................................................................................................. 21 2 1 5.00 5 4 0 1 0 0 0 0
..............................................................AACACGTAGATCCGATCTTGTG................................................................................................. 22 1 1 5.00 5 2 0 1 2 0 0 0
..............................................................ATCCCGTAGATCCGATCTTGTG................................................................................................. 22 1 1 5.00 5 5 0 0 0 0 0 0
..............................................................AACCCGTAGATCCCATCTTGTG................................................................................................. 22 1 1 5.00 5 0 3 0 2 0 0 0
..............................................................AACCCGTAGATACGATCTTGTGA................................................................................................ 23 2 1 5.00 5 2 2 1 0 0 0 0
..............................................................AACCCGTAGATCCGGTCTTGTT................................................................................................. 22 2 1 5.00 5 2 1 2 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTGCTC................................................................................................ 23 3 1 5.00 5 0 0 0 0 4 1 0
..............................................................AACCCGTAGATCCGATCTTGTTAA............................................................................................... 24 3 1 5.00 5 4 0 1 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTTA.................................................................................................. 21 2 1 5.00 5 2 1 2 0 0 0 0
..............................................................AACCCGTAGATCCGATATTGTGT................................................................................................ 23 2 1 5.00 5 3 1 1 0 0 0 0
...............................................................AACCGTAGATCCGATCTTGT.................................................................................................. 20 1 1 5.00 5 0 4 1 0 0 0 0
..............................................................AACCCGTTGATCCGATCTTGT.................................................................................................. 21 1 1 5.00 5 4 0 1 0 0 0 0
..............................................................AACCCGTAGATCCAATCTTGT.................................................................................................. 21 1 1 5.00 5 2 2 0 1 0 0 0
..............................................................AACCCGTAGATCCGATCTC.................................................................................................... 19 1 1 5.00 5 2 1 2 0 0 0 0
..............................................................AACCCGTAGATCCTATCTTGTGT................................................................................................ 23 2 1 5.00 5 2 0 2 1 0 0 0
....................................................................................................AAGCTCGCTTCTATGGGTCTGA........................................................... 22 1 1 5.00 5 2 0 0 3 0 0 0
..............................................................AACCCGAAGATCCGATCTTGT.................................................................................................. 21 1 1 5.00 5 1 0 2 2 0 0 0
..............................................................AACCCGTAGAGCCGATCTTGT.................................................................................................. 21 1 1 5.00 5 1 0 1 0 0 0 3
..............................................................AACACGTAGATCCGATCTTGT.................................................................................................. 21 1 1 5.00 5 1 1 0 1 0 0 2
..............................................................AACCCGTAGATCCGATCTTTTAA................................................................................................ 23 3 3 4.67 14 6 5 3 0 0 0 0
..............................................................AACCCGTAGATCCGTTCTTGTGATC.............................................................................................. 25 3 1 4.00 4 0 0 0 0 3 1 0
..............................................................AACCCGTCGATCCGATCTT.................................................................................................... 19 1 1 4.00 4 1 0 2 1 0 0 0
..............................................................AACCCGTAGATCCGATCTAGT.................................................................................................. 21 1 1 4.00 4 1 1 1 1 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTGATTC............................................................................................. 26 3 1 4.00 4 0 0 0 0 2 2 0
..............................................................AACCCGTAGATCCGATCTTATG................................................................................................. 22 1 1 4.00 4 1 0 0 2 0 0 1
.............................................................AAACCCGTAGATCCTATCTTGT.................................................................................................. 22 1 1 4.00 4 1 2 1 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTCA................................................................................................ 23 2 1 4.00 4 3 1 0 0 0 0 0
..............................................................AACCCGTAGCTCCGATCTTTTG................................................................................................. 22 2 1 4.00 4 1 2 1 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTGAC............................................................................................... 24 2 1 4.00 4 1 1 1 0 1 0 0
..............................................................AACCCGTCGATCCGATCTTGTGT................................................................................................ 23 2 1 4.00 4 0 1 0 2 0 0 1
..............................................................ACCCCGTAGATCCGATCTTGTGT................................................................................................ 23 2 1 4.00 4 2 0 2 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTGGGAAC............................................................................................ 27 3 1 4.00 4 2 1 1 0 0 0 0
...............................................................AACCGTAGATCCGATCTTGTGATC.............................................................................................. 24 3 1 4.00 4 0 0 0 0 2 2 0
..............................................................AACCCGTAGATTCGATCTTGTGT................................................................................................ 23 2 1 4.00 4 2 2 0 0 0 0 0
..............................................................ACCCCGTAGATCCGATCTTGTGA................................................................................................ 23 2 1 4.00 4 3 0 0 1 0 0 0
.............................................................AAACCCGTAGATCTGATCTTGT.................................................................................................. 22 1 1 4.00 4 2 1 1 0 0 0 0
..............................................................AACCCGTAGATCGGATCTTGT.................................................................................................. 21 1 1 4.00 4 2 1 1 0 0 0 0
.............................................................AAACCCGTAGATCCGATCTTGA.................................................................................................. 22 1 1 4.00 4 2 0 2 0 0 0 0
..............................................................AACCCGTAGATCCAATCTTGTGA................................................................................................ 23 2 1 4.00 4 1 1 1 1 0 0 0
..............................................................TACCCGTAGATCCGATCTTGT.................................................................................................. 21 1 1 4.00 4 1 0 2 1 0 0 0
..............................................................AACCCGTAGATCCGTTCTTGT.................................................................................................. 21 1 1 4.00 4 0 2 1 1 0 0 0
..............................................................AACCCGTACATCCGATCTTGTG................................................................................................. 22 1 1 4.00 4 2 2 0 0 0 0 0
...................................................................................................CAAGCTCGCTTCTATGGGTCTTA........................................................... 23 2 1 4.00 4 2 2 0 0 0 0 0
..............................................................AACCCGTAGATCCGATCCTGTGA................................................................................................ 23 2 2 4.00 8 4 3 0 1 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTGTC............................................................................................... 24 2 1 4.00 4 0 0 0 0 0 4 0
..............................................................AACCCGTAGATTCGATCTTG................................................................................................... 20 1 1 4.00 4 2 2 0 0 0 0 0
..............................................................AACCCGTAGATGCGATCTTTT.................................................................................................. 21 2 1 4.00 4 0 4 0 0 0 0 0
..............................................................AACCCGTAGATCAGATCTTGTG................................................................................................. 22 1 1 4.00 4 0 3 1 0 0 0 0
..............................................................AACCCGTAAATCCGATCTTGT.................................................................................................. 21 1 1 4.00 4 1 2 0 1 0 0 0
...............................................................ACCCGTAGATCCGATCTTGTG................................................................................................. 21 0 1 4.00 4 1 2 1 0 0 0 0
..............................................................AACCCGTAGATCCGATCTCTTG................................................................................................. 22 2 1 4.00 4 2 1 1 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTGGGTGA............................................................................................ 27 3 1 4.00 4 3 0 0 1 0 0 0
..............................................................AACCCGTCGATCCGATCTTGTGA................................................................................................ 23 2 1 4.00 4 2 1 0 1 0 0 0
..............................................................AACCTGTAGATCCGATCTTGTGT................................................................................................ 23 2 1 4.00 4 2 0 2 0 0 0 0
..................................................................CGTAGATCCGATCTTGTGATC.............................................................................................. 21 2 1 4.00 4 0 0 0 0 3 1 0
..............................................................AACCCGTAGATCCGATCTTCTGA................................................................................................ 23 2 1 4.00 4 1 2 0 1 0 0 0
..............................................................AACCCGTAGATCCGATTTT.................................................................................................... 19 1 1 4.00 4 2 1 1 0 0 0 0
..............................................................AACCCGTAGATCCGATCTATC.................................................................................................. 21 3 6 3.67 22 0 0 0 0 12 10 0
...................................................................GTAGATCCGATCTTGTGATC.............................................................................................. 20 2 6 3.17 19 0 0 0 0 18 1 0
..............................................................AACCAGTAGATCCGATCTTGTGATC.............................................................................................. 25 3 1 3.00 3 0 0 0 0 3 0 0
...................................................................................................CAAGCTCGCTTCTATGGGTCTGAATC........................................................ 26 2 1 3.00 3 0 0 0 0 3 0 0
............................................................GGAACCCGTAGATCCGATCTTGTG................................................................................................. 24 2 1 3.00 3 1 1 1 0 0 0 0
..............................................................CACCCGTAGATCCGATC...................................................................................................... 17 1 1 3.00 3 0 0 0 0 3 0 0
............................................................AAAACCCGTAGATCCGATCTTGTGT................................................................................................ 25 2 1 3.00 3 3 0 0 0 0 0 0
..............................................................AACCCGTAGATCCGGTCTTGTGA................................................................................................ 23 2 1 3.00 3 1 0 1 1 0 0 0
..............................................................AACCCGTAGATCCGATCTGT................................................................................................... 20 2 2 3.00 6 1 1 2 1 0 0 1
..............................................................AACCCGTGGATCCGATCTTG................................................................................................... 20 1 1 3.00 3 0 0 3 0 0 0 0
..............................................................GACCCGTAGATCCGATCTTGTGATC.............................................................................................. 25 3 1 3.00 3 0 0 0 0 3 0 0
....................................................................................................AAGCTCGCTTCTATGGGTCTG............................................................ 21 0 1 3.00 3 0 1 2 0 0 0 0
..............................................................AACCCGTAGATCCGATCATGTG................................................................................................. 22 1 1 3.00 3 1 1 1 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTCT................................................................................................ 23 2 1 3.00 3 0 3 0 0 0 0 0
..............................................................AACCCGTAGATCCTATCTT.................................................................................................... 19 1 1 3.00 3 0 1 2 0 0 0 0
..............................................................AACCCGTAGATTCGATCTTTT.................................................................................................. 21 2 2 3.00 6 3 2 1 0 0 0 0
..............................................................AACCCGTAGAGCCGATCTTGTG................................................................................................. 22 1 1 3.00 3 0 0 1 0 0 0 2
..............................................................AACCCTTAGATCCGATCTTGTGT................................................................................................ 23 2 1 3.00 3 0 2 0 1 0 0 0
..............................................................AACCCGTAGAACCGATCTTGTG................................................................................................. 22 1 1 3.00 3 3 0 0 0 0 0 0
..............................................................AACCCGCAGATCCGATCTTGTT................................................................................................. 22 2 1 3.00 3 1 1 1 0 0 0 0
..............................................................AACCCGTAGATCCGATTTTG................................................................................................... 20 1 1 3.00 3 2 0 0 1 0 0 0
..............................................................AACCAGTAGATCCGATCTTGTG................................................................................................. 22 1 1 3.00 3 0 2 0 1 0 0 0
..............................................................AACCCGTAGATCCGATATTTTG................................................................................................. 22 2 1 3.00 3 3 0 0 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTGAT................................................................................................. 22 2 1 3.00 3 0 0 0 0 0 3 0
..............................................................AACCCGTAGTTCCGATCTTGTG................................................................................................. 22 1 1 3.00 3 2 0 0 1 0 0 0
..............................................................AACCCGTAGCTCCGATCTTGTGATC.............................................................................................. 25 3 1 3.00 3 0 0 0 0 0 3 0
..............................................................AACCCGTAGATACGATCTTTT.................................................................................................. 21 2 1 3.00 3 0 3 0 0 0 0 0
.............................................................AAACCCGTAGATCCGATCTTGC.................................................................................................. 22 1 1 3.00 3 0 2 1 0 0 0 0
................................................................CCCGTAGATCCGATCTTGTGATC.............................................................................................. 23 2 1 3.00 3 0 0 0 0 3 0 0
..............................................................AACCCGTCGATCCGCTCTTGTG................................................................................................. 22 2 1 3.00 3 3 0 0 0 0 0 0
..............................................................AACCCGTAGATCTGATCTTGTT................................................................................................. 22 2 1 3.00 3 2 0 1 0 0 0 0
..............................................................AACCCGTAGCTCCGATCTT.................................................................................................... 19 1 1 3.00 3 1 0 2 0 0 0 0
..............................................................AACCCTTAGATCCGATCTTGTGA................................................................................................ 23 2 1 3.00 3 1 1 0 1 0 0 0
...................................................................................................CAAGCTCGCTTCTATGGTTCTGTATC........................................................ 26 2 1 3.00 3 0 0 0 0 1 2 0
..............................................................AACCCGTAGTTCCGATCTTGTGA................................................................................................ 23 2 1 3.00 3 0 0 1 2 0 0 0
..............................................................AACCCGTAGATCCGTTCTTTT.................................................................................................. 21 2 1 3.00 3 3 0 0 0 0 0 0
..............................................................AACCCGTAGCTCCGCTCTTGT.................................................................................................. 21 2 1 3.00 3 3 0 0 0 0 0 0
....................................................................................................AAGCTCGCTTCTATGGGTCTGTATC........................................................ 25 1 1 3.00 3 0 0 0 0 2 1 0
..............................................................AACCCGTAGATCCGATCTCGTGT................................................................................................ 23 2 1 3.00 3 1 0 1 1 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTTATC.............................................................................................. 25 3 1 3.00 3 0 0 0 0 3 0 0
.................................................................CCGTAGATCCGATCTTGTGATC.............................................................................................. 22 2 1 3.00 3 0 0 0 0 2 1 0
..............................................................AACCCGTGGATCCGATCTTGTG................................................................................................. 22 1 1 3.00 3 1 2 0 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTGACGAAC........................................................................................... 28 3 1 3.00 3 1 0 1 1 0 0 0
..............................................................AACCCGTAGATCCGATCTCT................................................................................................... 20 2 1 3.00 3 0 0 3 0 0 0 0
..............................................................AACCCGTAGATCCGATCTTGTGTAGA............................................................................................. 26 2 1 3.00 3 1 1 1 0 0 0 0

Anti-sense strand reads

TCTATAAATGTTGTTTAAAATATAATTATCCCTCGGGTACGTTCTACAACGGGTAACCGTATTTGGGCATCTAGGCTAGAACACCACTTCACCTGGCGTGTTCGAGCGAAGATACCCAGACACAGTCACACCATTAGACTGTTTTACGATATGTGTCACGGCAAGTTATTATCAAGTCATT

********************************************(((((((((((((((.(((((((((..(((.((((((.((........)))))))).)))..))))))))).)))))))))).)))))..***********************************************
Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex
SRR116844

epididymis
...........................................................TATTTGGGCATCTAGGCTAGAAC................................................................................................... 23 0 1 1.00 1 1 0
......................................................................CTAGGCTGGAACACC................................................................................................ 15 1 20 0.05 1 0 1

Generated: 09/01/2015 at 12:21 PM