ID:

mml-mir-96

 Coordinate:

chr3:168683642-168683719 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.4

Sense Strand Reads

GGCCCCTCGTCCAGTGTGTCCCCAGAGAGCCCACACCAGTGCCATCTGCTTGGCCGATTTTGGCACTAGCACATTTTTGCTTGTGTCTCTCCGCTCTGAGCAATCATGTGCAGTGCCAATATGGGAAAAGCAGGACCTGCAGCTGCGTCCGCCTCCCCTGCATCCTTGTGTCGGGGCC

*******************************************.(((((((..((.((.((((((((.((((((..(((((((((......)))...))))))..)))))))))))))).)).))..)))))))...***************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis		 SRR116844

epididymis		 SRR116840

epididymis		 SRR116841

prostate		 SRR116842

seminal vesicle
..........................................................TTTGGCACTAGCACATTTTTGCTATC.............................................................................................. 26 3 1 1484.00 1484 1360 124 0 0 0
..........................................................TTTGGCACTAGCACATTTTTGCATC............................................................................................... 25 2 1 685.00 685 607 78 0 0 0
..........................................................TTTGGCACTAGCACATTTTTGCT................................................................................................. 23 0 1 140.00 140 0 0 81 38 21
..........................................................TTTGGCACTAGCACATTTTTG................................................................................................... 21 0 1 35.00 35 0 0 32 0 3
..........................................................TTTGGCACTAGCACATTTTT.................................................................................................... 20 0 1 20.00 20 0 0 19 1 0
..........................................................TTTGGCACTAGCACATTTTTGC.................................................................................................. 22 0 1 15.00 15 0 0 7 5 3
..........................................................TTTGGCACTAGCACATTTTTGA.................................................................................................. 22 1 2 15.00 30 0 0 23 1 6
..........................................................TTTGGCACTAGCACATTTTTGCTAATC............................................................................................. 27 3 1 14.00 14 14 0 0 0 0
..........................................................TTTGGCACTAGCACATTTTTGATC................................................................................................ 24 2 1 13.00 13 11 2 0 0 0
..........................................................TTTGGCACTAGCACATTTTTTCT................................................................................................. 23 1 1 13.00 13 0 0 6 7 0
..........................................................TTTGGCACTAGCACATTTTTGCTT................................................................................................ 24 0 1 11.00 11 0 0 1 8 2
..........................................................TTTGGCACTAGCACATTTTTGTATC............................................................................................... 25 3 2 10.50 21 20 1 0 0 0
..........................................................TTTGGCACTAGCACCTTTTTGCATC............................................................................................... 25 3 1 10.00 10 7 3 0 0 0
..........................................................TTTGGCACTAGCACATTTTTGCTAT............................................................................................... 25 2 1 9.00 9 9 0 0 0 0
..........................................................TTTGGCACTAGCCCATTTTTGCATC............................................................................................... 25 3 1 8.00 8 6 2 0 0 0
..........................................................TTTGGCACTAGCACATTTTTT................................................................................................... 21 1 1 7.00 7 0 0 6 1 0
..........................................................TTTGGCACTAGCACATTTT..................................................................................................... 19 0 1 6.00 6 0 0 4 0 2
..........................................................TTTGGCACTAGCACATTTTTGAATC............................................................................................... 25 3 4 5.00 20 15 5 0 0 0
..........................................................TTTGGCACTAGCACATTTTTGCTATT.............................................................................................. 26 2 1 5.00 5 5 0 0 0 0
..........................................................TTTGGCACTAGCACATTTTTGCA................................................................................................. 23 1 1 4.00 4 2 0 1 1 0
..........................................................TTTGGCACTAGCACATTTTTGCTTATC............................................................................................. 27 2 1 4.00 4 4 0 0 0 0
..........................................................TTTGGCACTGGCACATTTTTGATC................................................................................................ 24 3 3 3.67 11 0 11 0 0 0
..........................................................TTTGGCACTAGCACATTTTTA................................................................................................... 21 1 1 3.00 3 0 0 3 0 0
..........................................................TTTGGCACTAGCTCATTTTTGCATC............................................................................................... 25 3 1 2.00 2 2 0 0 0 0
..........................................................TTTGGCACTAGCACATTTTTGT.................................................................................................. 22 1 1 2.00 2 0 0 2 0 0
..........................................................TTTGGCACTAGCACATTTTTGCTATA.............................................................................................. 26 3 1 2.00 2 2 0 0 0 0
..........................................................TTTGGCACTAGCACATTTTA.................................................................................................... 20 1 1 2.00 2 0 0 2 0 0
..........................................................TTTGGCACTAGCACATTTTTGCACC............................................................................................... 25 3 1 2.00 2 1 1 0 0 0
..........................................................TTTGGCACTAGCACATTTTTTCTA................................................................................................ 24 2 1 2.00 2 0 0 0 2 0
..........................................................TTTGGCACTAGCACATTTTTGCTA................................................................................................ 24 1 1 2.00 2 2 0 0 0 0
..........................................................TTTGGCACTAGCACATTTTTTC.................................................................................................. 22 1 1 1.00 1 0 0 1 0 0
..........................................................TTTGGCACTAGCACATTTTTGCTTT............................................................................................... 25 1 1 1.00 1 0 0 0 1 0
..........................................................TTTGGCACTAGCCCATTTTTGC.................................................................................................. 22 1 1 1.00 1 0 0 0 1 0
..........................................................TTTGGCACTAGCACATTTTTGCTAC............................................................................................... 25 2 1 1.00 1 1 0 0 0 0
..........................................................TTTGTCACTAGCACATTTTTGCT................................................................................................. 23 1 1 1.00 1 0 0 1 0 0
..........................................................TTTGGCACTAGCACCTTTTTGCAT................................................................................................ 24 2 1 1.00 1 0 0 1 0 0
..........................................................TTTGGCACTAGCACATTTTTGCAT................................................................................................ 24 1 1 1.00 1 1 0 0 0 0
..........................................................TTCGGCACTAGCACATTTTTG................................................................................................... 21 1 1 1.00 1 0 0 1 0 0
..........................................................CTTGGCACTAGCACATTTTTGCATC............................................................................................... 25 3 1 1.00 1 1 0 0 0 0
..........................................................TTTGGCACTATCACATTTTTGCATC............................................................................................... 25 3 2 1.00 2 1 1 0 0 0
..........................................................TTTGGCACTAGCACATCTTTGCATC............................................................................................... 25 3 1 1.00 1 1 0 0 0 0
..........................................................TTTTGCACTAGCACATTTTTGCATC............................................................................................... 25 3 1 1.00 1 1 0 0 0 0
..........................................................TTTGGCACTAGCACATTTTTGCTACC.............................................................................................. 26 3 1 1.00 1 1 0 0 0 0
..........................................................TTTGGCACTAGCACATTTTTGTT................................................................................................. 23 1 1 1.00 1 0 0 1 0 0
..........................................................TTTGGCTCTAGCACATTTTTGCATC............................................................................................... 25 3 1 1.00 1 1 0 0 0 0
..........................................................TTTGGTACTAGCACATTTTTGCTAT............................................................................................... 25 3 1 1.00 1 1 0 0 0 0
..........................................................TTTGGCACTAGCACATTTTTGCTAAC.............................................................................................. 26 3 1 1.00 1 1 0 0 0 0
..........................................................TTTGGCACTAGCACATTTTTGAT................................................................................................. 23 1 1 1.00 1 0 0 1 0 0
....................................................................................................CAATCATGTGCAGTGCCAATAT........................................................ 22 0 1 1.00 1 0 0 0 1 0
........................................................AATTTGGCACTAGCACATTTTTGCT................................................................................................. 25 1 1 1.00 1 0 0 0 1 0
..........................................................TTTGGCACAAGCACATTTTTGCT................................................................................................. 23 1 1 1.00 1 0 0 1 0 0
..........................................................TTTGGCACTAGCACATTTTTGCCTC............................................................................................... 25 2 1 1.00 1 1 0 0 0 0
..........................................................TTTGGCACTAGCACATTTG..................................................................................................... 19 1 1 1.00 1 0 0 1 0 0
..........................................................TTTGGTACTAGCACATTTTTGCATT............................................................................................... 25 3 1 1.00 1 0 1 0 0 0
..........................................................TTTGGCACTAGCACATTTTAGCTAT............................................................................................... 25 3 1 1.00 1 0 1 0 0 0
..........................................................TTTGGCCCTAGCACATTTTTGCATC............................................................................................... 25 3 2 1.00 2 1 1 0 0 0
..........................................................TTTGGCACTAGCACCTTTTTGCTAT............................................................................................... 25 3 1 1.00 1 1 0 0 0 0
..........................................................TTTGGCACTAGCACCTTTTT.................................................................................................... 20 1 1 1.00 1 0 0 1 0 0
..........................................................TTTGCCACTAGCACATTTTTGCATC............................................................................................... 25 3 1 1.00 1 1 0 0 0 0
..........................................................TTTGGCACTAGCACATTTTTGCAA................................................................................................ 24 2 1 1.00 1 0 0 0 1 0
..........................................................TTTGGCACTAGCACATTTA..................................................................................................... 19 1 1 1.00 1 0 0 0 0 1
..........................................................TTTGGCACTAGCACATTTTTTA.................................................................................................. 22 2 6 0.67 4 0 0 4 0 0
..........................................................TTTGGGACTAGCACATTTTTGCATC............................................................................................... 25 3 2 0.50 1 1 0 0 0 0
..........................................................TTTGACACTAGCACATTTTTGCATC............................................................................................... 25 3 2 0.50 1 1 0 0 0 0
..........................................................TTTGGCATTAGCACATTTTTGCATC............................................................................................... 25 3 2 0.50 1 1 0 0 0 0
..........................................................TTTGGCACTAGCCCATTTTTGATC................................................................................................ 24 3 2 0.50 1 0 1 0 0 0
..........................................................TTTGGCACTAGCACATATTTGA.................................................................................................. 22 2 2 0.50 1 0 0 1 0 0
..........................................................TTTGGCACTAGCACATTTTTGAA................................................................................................. 23 2 3 0.33 1 0 0 1 0 0
..........................................................TTTGGCACTAGCACATTTTTTT.................................................................................................. 22 2 3 0.33 1 0 0 0 1 0
..........................................................TTTGGCACTAGCTCATTTTTGCTAT............................................................................................... 25 3 3 0.33 1 1 0 0 0 0
..........................................................TTTGGCACTAGCACATTTTTGAAT................................................................................................ 24 2 3 0.33 1 1 0 0 0 0
..........................................................TTTGTCACTAGCACATTTTTTCT................................................................................................. 23 2 4 0.25 1 0 0 1 0 0
..........................................................TTTTGCACTAGCACATTTTTGA.................................................................................................. 22 2 4 0.25 1 0 0 1 0 0
..........................................................TTTTGCACTAGCACATTTTTT................................................................................................... 21 2 5 0.20 1 0 0 1 0 0
..........................................................TTTGGCACTGGCACATTT...................................................................................................... 18 1 7 0.14 1 0 1 0 0 0
..........................................................TTTGGCACTAGCACATTTAA.................................................................................................... 20 2 15 0.13 2 0 0 2 0 0
..........................................................TTTGGCACTAGCACATTTTGA................................................................................................... 21 2 8 0.13 1 0 0 0 0 1
..........................................................TTTGGCACTGGCACATTTTTGTC................................................................................................. 23 3 10 0.10 1 0 1 0 0 0

Anti-sense strand reads

CCGGGGAGCAGGTCACACAGGGGTCTCTCGGGTGTGGTCACGGTAGACGAACCGGCTAAAACCGTGATCGTGTAAAAACGAACACAGAGAGGCGAGACTCGTTAGTACACGTCACGGTTATACCCTTTTCGTCCTGGACGTCGACGCAGGCGGAGGGGACGTAGGAACACAGCCCCGG

*****************************************.(((((((..((.((.((((((((.((((((..(((((((((......)))...))))))..)))))))))))))).)).))..)))))))...******************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis
........................CTATGGGGTGTGGTCACGGT...................................................................................................................................... 20 2 6 0.33 2 2

Generated: 09/01/2015 at 12:22 PM