ID:

mml-mir-940

 Coordinate:

chr20:2288681-2288774 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-62.2 -62.2 -62.2 -62.2

Sense Strand Reads

GCTGGTCCATGTGGAGCTCCTTCAAGCCGAAGCATCTGACACCAGTGTCTGTGGGGTGTGGGCCCGGCCCCAGGAGCGGGGCCTGGGCAGCCCCGTGTGTTGAGGAAGGAAGGCAGGGCCCCCGCTCCCCGGGCCTGACCCCACTGCTTCAGCCCCCTCCTGCCTGCCTGCAGCCTGGCCTCGAGGGCCCATCA

***********************************..((...........(((((((...(((((((.....(((((((((........((((..(((.((........)).)))))))))))))))))))))))..))))))).............))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116842

seminal vesicle
.............................................................................................................AAGGCAGGGCCCCCGCTCCCC................................................................ 21 0 1 22.00 22 21 1
.............................................................................................................AAGGCAGGGCCCCCGCTCCCCT............................................................... 22 1 1 11.00 11 11 0
.............................................................................................................AAGGCAGGGCCCCCGCTCCC................................................................. 20 0 1 7.00 7 7 0
.............................................................................................................AAGGCAGGGCCCCCGCTCCCCTTT............................................................. 24 3 1 5.00 5 5 0
.............................................................................................................AAGGCAGGGCCCCCGCTCCCCTAT............................................................. 24 3 2 3.00 6 5 1
.............................................................................................................AAGGCAGGGCCCCCGCTCCCCGG.............................................................. 23 0 1 2.00 2 2 0
.............................................................................................................AAGGCAGGGCCCCCGCTCCCCTT.............................................................. 23 2 1 1.00 1 1 0
.............................................................................................................AAGGCAGGGCCCCCGCTCCCCGGTT............................................................ 25 2 1 1.00 1 1 0
............................................................................................................GAAGGCAGGGCCCCCGCTCCCC................................................................ 22 0 1 1.00 1 0 1
.............................................................................................................AAGGCAGGGCCCCCGCTCCCCGGA............................................................. 24 1 1 1.00 1 1 0
.............................................................................................................AAGGCAGGGCCCCCGCTCCCCA............................................................... 22 1 2 1.00 2 2 0
...................................................................................................TTGCGGAAGGAAGGCAGGGCCCCCGC..................................................................... 26 1 1 1.00 1 0 1
.............................................................................................................AAGGCAGGGCCGCCGCTCCCC................................................................ 21 1 1 1.00 1 1 0
..........................................................................................................AGGAAGGCAGGGCCCCCGC..................................................................... 19 0 1 1.00 1 0 1
.............................................................................................................AAGGCAGGGCCCCCGCTCC.................................................................. 19 0 2 1.00 2 2 0
.............................................................................................................AAGGCAGGGCCCCCGCTCCCCTAA............................................................. 24 3 3 0.67 2 2 0
.............................................................................................................AAGGCAGGGCCCCCGCTCCCCAT.............................................................. 23 2 2 0.50 1 1 0
.............................................................................................................AAGGCAGGGCCCCCGCTCCCT................................................................ 21 1 2 0.50 1 1 0
.............................................................................................................AAGGCAGGGCCCCCGCTCCCCCA.............................................................. 23 2 3 0.33 1 1 0
.............................................................................................................AAGGCAGGGCCCCCGCTCCA................................................................. 20 1 3 0.33 1 1 0
.............................................................................................................AAGGCAGGGCCCCCGCTCCCAC............................................................... 22 2 3 0.33 1 1 0
.............................................................................................................AAGGCAGGGCCCCCGCTCCCATT.............................................................. 23 3 5 0.20 1 1 0

Anti-sense strand reads

CGACCAGGTACACCTCGAGGAAGTTCGGCTTCGTAGACTGTGGTCACAGACACCCCACACCCGGGCCGGGGTCCTCGCCCCGGACCCGTCGGGGCACACAACTCCTTCCTTCCGTCCCGGGGGCGAGGGGCCCGGACTGGGGTGACGAAGTCGGGGGAGGACGGACGGACGTCGGACCGGAGCTCCCGGGTAGT

***********************************..((...........(((((((...(((((((.....(((((((((........((((..(((.((........)).)))))))))))))))))))))))..))))))).............))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:20 PM