ID:

mml-mir-9-2

 Coordinate:

chr6:85354009-85354095 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.5 -38.5 -38.3
mature

  1. mml-mir-9-1  chr1:135522562-135522584 -
  2. mml-mir-9-2  chr6:85354058-85354080 -
star

  1. mml-mir-9-1  chr1:135522524-135522545 -
  2. mml-mir-9-2  chr6:85354022-85354043 -

Sense Strand Reads

GAAAGGATCGGGACCTGGAGTCTGGCAAGAGGAAGACAGAGGCCTGTGTGGGAAGCGAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAACTCCTTCAAGATCGCCGGGGAGCGTGTGAGAGTGAAAGACTACAACCGAGAGACAGTA

**************************************************.((((.(((((.((((.(((((((((((((((.((((((..........)))))).))))))))))))))).)))).)))))))))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116844

epididymis		 SRR116841

prostate		 SRR116845

epididymis		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116839

testes
.................................................................TCTTTGGTTATCTAGCTGTATGA................................................................................................... 23 0 2 4718.00 9436 9357 6 30 0 17 22 4
......................................................................................................ATAAAGCTAGATAACCGAAAGT............................................................... 22 0 2 4651.50 9303 9256 0 12 0 19 7 9
.......................................................................................................TAAAGCTAGATAACCGAAAGTA.............................................................. 22 0 2 2285.50 4571 4518 0 29 0 11 11 2
......................................................................................................ATAAAGCTAGATAACCGAAAGTA.............................................................. 23 0 2 1494.00 2988 2954 0 12 0 14 3 5
.................................................................TCTTTGGTTATCTAGCTGTATG.................................................................................................... 22 0 2 1399.50 2799 2766 1 19 0 3 10 0
.................................................................TCTTTGGTTATCTAGCTGTAT..................................................................................................... 21 0 2 1183.00 2366 2348 0 8 0 5 3 2
.......................................................................................................TAAAGCTAGATAACCGAAAGTAA............................................................. 23 0 2 1040.00 2080 2042 0 18 0 9 8 3
.......................................................................................................TAAAGCTAGATAACCGAAAGT............................................................... 21 0 2 868.50 1737 1717 0 13 0 6 1 0
.................................................................TCTTTGGTTATCTAGCTGTA...................................................................................................... 20 0 2 537.50 1075 1065 0 7 0 1 2 0
.................................................................TCTTTGGTTATCTAGCTGTATTA................................................................................................... 23 1 2 373.00 746 742 0 0 0 3 0 1
.................................................................TCTTTGGTTATCTATCTGTATGA................................................................................................... 23 1 2 313.00 626 623 0 1 0 2 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAGTAT............................................................. 23 1 2 295.00 590 575 0 10 0 5 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGT................................................................................................... 23 1 2 268.00 536 527 0 6 0 2 1 0
.................................................................TCTTTGGTTATCTAGCTGTATGAATC................................................................................................ 26 2 2 227.00 454 0 378 0 76 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATGA................................................................................................... 22 0 2 214.50 429 421 0 0 0 4 3 1
......................................................................................................ATAAAGCTAGATAACCGAAAGTAA............................................................. 24 0 2 203.50 407 400 0 3 0 0 2 2
.................................................................TCTTTGGTTATCTAGCTTTATGA................................................................................................... 23 1 2 199.00 398 392 0 5 0 1 0 0
.................................................................TCTTTGGTTATCTAGCTGTATT.................................................................................................... 22 1 2 199.00 398 396 0 2 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGATC................................................................................................. 25 2 3 178.33 535 0 459 0 76 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAA.................................................................................................. 24 1 2 166.00 332 325 1 4 0 0 1 1
......................................................................................................ATAAAGCTAGATAACCGAAAG................................................................ 21 0 2 110.00 220 219 0 0 0 1 0 0
.................................................................TCTTTGGTTATCTATCTGTATG.................................................................................................... 22 1 2 91.50 183 181 0 2 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGT....................................................................................................... 19 0 2 89.00 178 176 0 0 0 0 2 0
......................................................................................................ATAAAGCTAGATAACCGAAAGTAT............................................................. 24 1 2 78.00 156 156 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAAA................................................................................................. 25 2 2 67.50 135 135 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTATG.................................................................................................... 22 1 2 67.00 134 133 0 0 0 1 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAGA............................................................... 22 1 2 62.00 124 123 0 0 0 1 0 0
.................................................................TCTTTGGTTATCTATCTGTAT..................................................................................................... 21 1 3 56.67 170 169 0 0 0 1 0 0
.................................................................TCTTTGGTTATCTAGCTGTAA..................................................................................................... 21 1 2 53.50 107 107 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTAT..................................................................................................... 21 1 3 51.33 154 154 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTATTA................................................................................................... 23 2 3 48.00 144 140 0 3 0 0 0 1
......................................................................................................ATAAAGCTAGATAACTGAAAGT............................................................... 22 1 2 37.50 75 75 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAG................................................................ 20 0 2 34.00 68 67 0 0 0 1 0 0
......................................................................................................ATAAAGCTAGATAACCGACAGT............................................................... 22 1 2 33.50 67 67 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTA...................................................................................................... 20 1 3 31.67 95 95 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAGTT.............................................................. 23 1 2 29.00 58 58 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAA................................................................. 20 0 2 28.00 56 55 0 1 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATTA................................................................................................... 22 1 2 27.00 54 54 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGTA...................................................................................................... 20 1 3 25.33 76 76 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAT.................................................................................................. 24 1 2 23.00 46 45 1 0 0 0 0 0
...................................................................TTTGGTTATCTAGCTGTATGA................................................................................................... 21 0 2 23.00 46 46 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAGAA.............................................................. 23 1 2 21.00 42 40 0 0 0 2 0 0
.................................................................TCTTTGGTTATCTAGCTGTATTT................................................................................................... 23 2 4 20.75 83 83 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAGAA.............................................................. 22 1 2 20.50 41 41 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATGAA.................................................................................................. 23 1 2 18.00 36 36 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACTGAAAGTA.............................................................. 22 1 2 18.00 36 36 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATA.................................................................................................... 22 1 2 17.50 35 34 0 1 0 0 0 0
..................................................................CTTTGGTTATCTAGCTTTATGA................................................................................................... 22 1 2 16.50 33 33 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATG.................................................................................................... 21 0 2 15.50 31 31 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATATC.................................................................................................. 24 3 7 15.14 106 0 103 0 3 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTATT.................................................................................................... 22 2 5 14.60 73 72 0 1 0 0 0 0
.................................................................TCTTTGGTTATGTAGCTGTATGA................................................................................................... 23 1 2 14.50 29 29 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGACAACCGAAAGT............................................................... 22 1 2 14.00 28 28 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAGTAAA............................................................ 24 0 2 13.50 27 27 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGTATTA................................................................................................... 23 2 3 13.00 39 39 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATTAA.................................................................................................. 24 2 2 12.50 25 25 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAA.................................................................. 19 0 2 12.00 24 24 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAATT............................................................... 22 1 2 12.00 24 24 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGAGAACCGAAAGT............................................................... 22 1 2 11.50 23 23 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTTTATGA................................................................................................... 23 2 4 11.50 46 46 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGTATGAA.................................................................................................. 24 2 2 10.00 20 20 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGCAAGTA.............................................................. 22 1 2 9.50 19 19 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTG........................................................................................................ 18 0 2 9.00 18 17 0 0 0 1 0 0
......................................................................................................ATAAAGCTAGATAACCGACAGTA.............................................................. 23 1 2 8.50 17 17 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAGA............................................................... 21 1 2 8.50 17 17 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAGAAA............................................................. 23 1 2 8.50 17 17 0 0 0 0 0 0
.................................................................TCTTTGGTTATTTAGCTGTATGA................................................................................................... 23 1 2 8.50 17 17 0 0 0 0 0 0
.................................................................TCTTTGGTTCTCTAGCTGTATGA................................................................................................... 23 1 2 8.00 16 16 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAAC................................................................................................. 25 2 2 8.00 16 8 7 0 1 0 0 0
.......................................................................................................TAAAGCTAGATCACCGAAAGTA.............................................................. 22 1 2 7.50 15 15 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCTAAAGT............................................................... 22 1 2 7.50 15 15 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGACAACCGAAAGTA.............................................................. 23 1 2 7.50 15 15 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACTGAAAGT............................................................... 21 1 3 7.33 22 22 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTATGT................................................................................................... 23 2 3 7.00 21 20 0 1 0 0 0 0
.......................................................................................................TAAAGCTAGATAACTGAAAGTAA............................................................. 23 1 2 7.00 14 14 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGTATGT................................................................................................... 23 2 6 6.50 39 39 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATTAAA................................................................................................. 25 3 2 6.50 13 13 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAGTAAAA........................................................... 25 0 2 6.50 13 13 0 0 0 0 0 0
.................................................................TCTTTGTTTATCTAGCTGTATGA................................................................................................... 23 1 3 6.33 19 19 0 0 0 0 0 0
.................................................................TCTTTGGTTATATAGCTGTATGA................................................................................................... 23 1 2 6.00 12 11 0 1 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTAT..................................................................................................... 20 0 2 6.00 12 12 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAGTAAA............................................................ 25 0 2 6.00 12 12 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAG........................................................................................................... 15 0 7 6.00 42 41 0 1 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAGC............................................................... 22 1 2 6.00 12 12 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGA................................................................... 18 0 2 5.50 11 11 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGCAAGT............................................................... 22 1 2 5.50 11 11 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACTGAAAGTA.............................................................. 23 1 2 5.50 11 10 0 0 0 1 0 0
.................................................................TCTTTGGTTATCTAGCTTTATGAA.................................................................................................. 24 2 2 5.50 11 11 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATCACCGAAAGTAA............................................................. 23 1 2 5.00 10 10 0 0 0 0 0 0
.................................................................TCCTTGGTTATCTAGCTGTATGA................................................................................................... 23 1 2 5.00 10 10 0 0 0 0 0 0
.................................................................TCTTTTGTTATCTAGCTGTATGA................................................................................................... 23 1 2 5.00 10 10 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAAAA................................................................................................ 26 3 2 5.00 10 10 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCTAAAGT............................................................... 21 1 2 5.00 10 10 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGTT.................................................................................................. 24 2 2 4.50 9 8 0 1 0 0 0 0
.......................................................................................................TAAAGCTAGATGACCGAAAGTA.............................................................. 22 1 2 4.50 9 9 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGCAAGTAA............................................................. 23 1 2 4.50 9 9 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGAGAACCGAAAGTA.............................................................. 23 1 2 4.50 9 9 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAGTATT............................................................ 24 2 2 4.50 9 9 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAATTA.............................................................. 23 1 2 4.50 9 9 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATAA................................................................................................... 23 1 2 4.50 9 9 0 0 0 0 0 0
.................................................................TCTTTGGTTATCCAGCTGTATGA................................................................................................... 23 1 2 4.50 9 9 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAGTAG............................................................. 23 1 2 4.50 9 9 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTCTGA................................................................................................... 23 1 2 4.00 8 8 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAA................................................................. 19 0 2 4.00 8 8 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGACAGTA.............................................................. 22 1 2 4.00 8 8 0 0 0 0 0 0
.................................................................TCTTTGGTTATGTAGCTGTAT..................................................................................................... 21 1 2 4.00 8 8 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAATCGAAAGT............................................................... 22 1 2 4.00 8 8 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAATTA.............................................................. 22 1 2 4.00 8 8 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAA................................................................ 21 1 2 4.00 8 8 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTAATC................................................................................................... 23 3 9 4.00 36 0 32 0 4 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGTA.................................................................................................. 24 2 3 3.67 11 11 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATT.................................................................................................... 21 1 2 3.50 7 7 0 0 0 0 0 0
...................................................................TTTGGTTATCTAGCTGTATGAGA................................................................................................. 23 1 2 3.50 7 7 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATGAT.................................................................................................. 23 1 2 3.50 7 6 0 1 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAGGA.............................................................. 22 1 2 3.50 7 7 0 0 0 0 0 0
.................................................................TCTTTGGTTATGTAGCTGTATG.................................................................................................... 22 1 2 3.50 7 7 0 0 0 0 0 0
...................................................................TTTGGTTATCTAGCTGTATTA................................................................................................... 21 1 2 3.50 7 7 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAACGTA.............................................................. 22 1 2 3.50 7 7 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCTAAAGTA.............................................................. 22 1 2 3.50 7 7 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGC................................................................................................... 23 1 2 3.50 7 7 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAA.................................................................. 18 0 2 3.50 7 7 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAG.................................................................................................. 24 0 2 3.50 7 7 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAGCA.............................................................. 22 1 2 3.50 7 7 0 0 0 0 0 0
.....................................................................................................AATAAAGCTAGATAACCGAAAGTA.............................................................. 24 1 2 3.50 7 7 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAGAAA............................................................. 24 1 2 3.50 7 7 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGCAAGT............................................................... 21 1 2 3.50 7 7 0 0 0 0 0 0
....................................................................................................AAATAAAGCTAGATAACCGAAAGT............................................................... 24 2 2 3.50 7 7 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGTATT.................................................................................................... 22 2 6 3.50 21 21 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGC.......................................................................................................... 16 0 3 3.33 10 9 0 0 0 1 0 0
.................................................................TCTTTGGTTATCTATCTTTATG.................................................................................................... 22 2 4 3.25 13 13 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTAAA.................................................................................................... 22 2 5 3.20 16 16 0 0 0 0 0 0
.................................................................TCTTTGGTCATCTAGCTGTATGA................................................................................................... 23 1 2 3.00 6 6 0 0 0 0 0 0
.....................................................................................................CATAAAGCTAGATAACCGAAAGT............................................................... 23 0 2 3.00 6 6 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATCACCGAAAGT............................................................... 21 1 2 3.00 6 6 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAGTAG............................................................. 24 1 2 3.00 6 6 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGCATGA................................................................................................... 23 1 2 3.00 6 6 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAACTGTATGA................................................................................................... 23 1 2 3.00 6 6 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTCTATGA................................................................................................... 23 1 2 3.00 6 6 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTCT..................................................................................................... 21 1 2 3.00 6 6 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAATCGAAAGTA.............................................................. 22 1 2 3.00 6 6 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATGAG.................................................................................................. 23 0 2 3.00 6 6 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAG................................................................. 20 1 2 3.00 6 6 0 0 0 0 0 0
......................................................................................................ATAAAGTTAGATAACCGAAAGT............................................................... 22 1 2 3.00 6 6 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAGT................................................................ 21 2 3 2.67 8 8 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTACCTGTATGA................................................................................................... 23 1 2 2.50 5 5 0 0 0 0 0 0
......................................................................................................ATAGAGCTAGATAACCGAAAGT............................................................... 22 1 2 2.50 5 5 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGG................................................................................................... 23 1 2 2.50 5 5 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGTTGTATGA................................................................................................... 23 1 2 2.50 5 5 0 0 0 0 0 0
.................................................................CCTTTGGTTATCTAGCTGTATGA................................................................................................... 23 1 2 2.50 5 5 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATTACCGAAAGTA.............................................................. 22 1 2 2.50 5 5 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAGTAC............................................................. 23 1 2 2.50 5 5 0 0 0 0 0 0
.................................................................TCTTTGGTTCTCTATCTGTATGA................................................................................................... 23 2 2 2.50 5 5 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATGT................................................................................................... 22 1 2 2.50 5 5 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAGAAT............................................................. 23 2 2 2.50 5 5 0 0 0 0 0 0
......................................................................................................ACAAAGCTAGATAACCGAAAGT............................................................... 22 1 2 2.50 5 4 0 0 0 1 0 0
.......................................................................................................TAAAGCTAGATAATCGAAAGT............................................................... 21 1 2 2.50 5 5 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATGACCGAAAGT............................................................... 21 1 2 2.50 5 5 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAACGT............................................................... 22 1 2 2.50 5 4 0 0 0 0 0 1
.................................................................TCTCTGGTTATCTAGCTGTATGA................................................................................................... 23 1 2 2.50 5 5 0 0 0 0 0 0
.................................................................TCTTTGGTTCTCTAGCTGTATG.................................................................................................... 22 1 2 2.50 5 5 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGCTAACCGAAAGTA.............................................................. 22 1 2 2.50 5 5 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAGAAT............................................................. 24 2 2 2.50 5 4 0 0 0 1 0 0
......................................................................................................ATAAATCTAGATAACCGAAAGT............................................................... 22 1 2 2.50 5 5 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATCA................................................................................................... 23 1 2 2.50 5 5 0 0 0 0 0 0
.........................................................................................................AAGCTAGATAACCGAAAGTA.............................................................. 20 0 2 2.50 5 5 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATCACCGAAAGTAT............................................................. 23 2 2 2.50 5 5 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAT................................................................ 21 1 2 2.50 5 5 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGTAA................................................................................................. 25 3 4 2.25 9 9 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATGACCGAAAGT............................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAGTC.............................................................. 23 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTCTAT..................................................................................................... 21 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAAT................................................................................................. 25 1 2 2.00 4 2 2 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTT....................................................................................................... 19 1 3 2.00 6 6 0 0 0 0 0 0
.......................................................................................................TAAATCTAGATAACCGAAAGTA.............................................................. 22 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAC.................................................................................................. 24 1 2 2.00 4 1 1 0 2 0 0 0
......................................................................................................ATAAAGCTAGATAACCGCAAGTA.............................................................. 23 1 2 2.00 4 4 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAGG............................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0
...................................................................TTTGGTTATCTAGCTGTATG.................................................................................................... 20 0 2 2.00 4 4 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGACAGTAA............................................................. 23 1 2 2.00 4 4 0 0 0 0 0 0
.......................................................................................................TAAGGCTAGATAACCGAAAGT............................................................... 21 1 2 2.00 4 4 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATGAAA................................................................................................. 24 2 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGACGGT............................................................................................... 27 2 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................TAAAGCTGGATAACCGAAAGTA.............................................................. 22 1 2 2.00 4 4 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTA...................................................................................................... 19 0 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAGATC............................................................................................... 27 3 2 2.00 4 0 4 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAGTT.............................................................. 22 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATTAT.................................................................................................. 24 2 2 2.00 4 4 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAGTG.............................................................. 23 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTTTCTAGCTGTATGA................................................................................................... 23 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGCTTATCTAGCTGTATGA................................................................................................... 23 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTAGGTTATCTAGCTGTATGA................................................................................................... 23 1 2 2.00 4 4 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGACAACCGAAAGTA.............................................................. 22 1 2 2.00 4 4 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAGTAC............................................................. 24 1 2 2.00 4 4 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATGACCGAAAGTAA............................................................. 23 1 2 2.00 4 4 0 0 0 0 0 0
...............................................................AATCTTTGGTTATCTAGCTGTATG.................................................................................................... 24 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGTTTATCTAGCTGTAT..................................................................................................... 21 1 3 2.00 6 6 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTCGCTGTATGA................................................................................................... 23 1 2 2.00 4 4 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAATT............................................................... 21 1 2 2.00 4 4 0 0 0 0 0 0
......................................................................................................ATAAGGCTAGATAACCGAAAGT............................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0
......................................................................................................ATAAAGATAGATAACCGAAAGT............................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTACCTAGCTGTATGA................................................................................................... 23 1 2 2.00 4 4 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGACAGT............................................................... 21 1 2 2.00 4 4 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCAAAAGT............................................................... 22 1 3 2.00 6 6 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAGCCGAAAGT............................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTCGGTTATCTAGCTGTATGA................................................................................................... 23 1 2 2.00 4 4 0 0 0 0 0 0
..................................................................CTTTGGTTATCTATCTGTATGA................................................................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0
......................................................................................................ATAAAGCTATATAACCGAAAGT............................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTAGAAC.................................................................................................. 24 3 4 1.75 7 7 0 0 0 0 0 0
.................................................................TCTTTGGTTATGTAGCTGTA...................................................................................................... 20 1 4 1.75 7 7 0 0 0 0 0 0
....................................................................................................GTATAAAGCTAGATAACCGAAA................................................................. 22 2 3 1.67 5 5 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAGC............................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAGCAA............................................................. 24 1 2 1.50 3 3 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGATAGTA.............................................................. 22 1 2 1.50 3 3 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGATAGT............................................................... 21 1 2 1.50 3 2 0 1 0 0 0 0
......................................................................................................ATAAATCTAGATAACCGAAAGTA.............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAACTA.............................................................. 22 1 2 1.50 3 3 0 0 0 0 0 0
.....................................................................TGGTTATCTAGCTGTATGA................................................................................................... 19 0 2 1.50 3 3 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCTAAAGTAA............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCAAGCTGTATGA................................................................................................... 23 1 2 1.50 3 3 0 0 0 0 0 0
......................................................................................................ATAAACCTAGATAACCGAAAGT............................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTTGCTGTATGA................................................................................................... 23 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTAAT.................................................................................................... 22 2 2 1.50 3 2 0 1 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGGAAGTA.............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTACG.................................................................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCCAGCTGTATG.................................................................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTACGA................................................................................................... 23 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTCGCTGTATG.................................................................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
.......................................................................................................TAAAGCTATATAACCGAAAGTA.............................................................. 22 1 2 1.50 3 3 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAGAGTA.............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGGAC................................................................................................. 25 3 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTAG..................................................................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAGTAAT............................................................ 24 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGTATGAT.................................................................................................. 24 2 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTGTCTAGCTGTATGA................................................................................................... 23 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTTGCTGTAT..................................................................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGGTATCTAGCTGTATGA................................................................................................... 23 1 2 1.50 3 3 0 0 0 0 0 0
......................................................................................................ATCAAGCTAGATAACCGAAAGT............................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
................................................................TTCTTTGGTTATCTAGCTGTA...................................................................................................... 21 1 2 1.50 3 2 0 1 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGTTTGA................................................................................................... 23 2 2 1.50 3 3 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGCTAACCGAAAGTAA............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATGTAGCTGTATTA................................................................................................... 23 2 2 1.50 3 3 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATACCCGAAAGT............................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................AAAGCTAGATAACCGAAAGTAAT............................................................ 23 1 2 1.50 3 3 0 0 0 0 0 0
...................................................................TTTGGTTATCTAGCTGTATGAA.................................................................................................. 22 1 2 1.50 3 1 0 0 0 0 2 0
.......................................................................................................TAAATCTAGATAACCGAAAGTAA............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAGGA.............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCAAAAGTAA............................................................. 24 1 2 1.50 3 3 0 0 0 0 0 0
.......................................................................................................TAAAGCTGGATAACCGAAAGTAA............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
......................................................................................................ATAAAGATAGATAACCGAAAGTA.............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAAAGTG.............................................................. 22 1 2 1.50 3 3 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCTAAAGTA.............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
.....................................................................................................TATAAAGCTAGATAACCGAAAG................................................................ 22 1 2 1.50 3 3 0 0 0 0 0 0
.......................................................................................................TAAAACTAGATAACCGAAAGTAA............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGACAGTAA............................................................. 24 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATC.................................................................................................... 22 1 2 1.50 3 2 1 0 0 0 0 0
.................................................................................................TCGGTATAAAGCTAGATAACCGAAAGT............................................................... 27 3 2 1.50 3 3 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACTGAAAG................................................................ 21 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTATATGA................................................................................................... 23 1 2 1.50 3 3 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTTTATG.................................................................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAACT............................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAACGT............................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAGGT............................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTGTGA................................................................................................... 23 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCCTTGGTTATCTAGCTGTAT..................................................................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAGAGT............................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATATAGCTGTATG.................................................................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGT....................................................................................................... 19 1 5 1.40 7 7 0 0 0 0 0 0
.................................................................TCTTTTGTTATCTATCTGTATGA................................................................................................... 23 2 3 1.33 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTACCTGTAT..................................................................................................... 21 1 3 1.33 4 4 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGACAGA............................................................... 22 2 3 1.33 4 4 0 0 0 0 0 0
...................................................................TTTGGTTATCTAGCTGTATGATC................................................................................................. 23 2 3 1.33 4 3 1 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGCTC................................................................................................. 25 3 4 1.25 5 0 5 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTATGAAA................................................................................................. 25 3 5 1.20 6 6 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGTATGAAA................................................................................................. 25 3 6 1.17 7 7 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTTTAT..................................................................................................... 21 2 20 1.05 21 21 0 0 0 0 0 0
.................................................................ACTTTGGTTATCTAGCTGTATGA................................................................................................... 23 1 2 1.00 2 2 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTATTAA.................................................................................................. 24 3 6 1.00 6 6 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTCGCTGTATGAATC................................................................................................ 26 3 2 1.00 2 0 2 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAACGTAA............................................................. 23 1 2 1.00 2 2 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGACTC................................................................................................ 26 2 2 1.00 2 0 2 0 0 0 0 0
.....................................................................................................AATAAAGCTAGATAACCGAAAGT............................................................... 23 1 2 1.00 2 2 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGAATGA................................................................................................... 23 1 2 1.00 2 2 0 0 0 0 0 0
....................................................................................................AAATAAAGCTAGATAACCGAAAGTA.............................................................. 25 2 2 1.00 2 2 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGATT................................................................................................. 25 1 2 1.00 2 0 2 0 0 0 0 0
...................................................................TTTGGTTATCTAGCTTTATGA................................................................................................... 21 1 4 1.00 4 4 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCAAAAGTA.............................................................. 22 1 2 1.00 2 2 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAACTCAA............................................................. 24 3 2 1.00 2 2 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCCAAAGT............................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0
.................................................................TCTCTGGTTATCTAGCTGTATGAATC................................................................................................ 26 3 2 1.00 2 0 2 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGACGG................................................................................................ 26 2 2 1.00 2 2 0 0 0 0 0 0
......................................................................................................ATAAAGCTATATAACCGAAAGTA.............................................................. 23 1 2 1.00 2 2 0 0 0 0 0 0
.................................................................TCATTGGTTATCTAGCTGTATGA................................................................................................... 23 1 2 1.00 2 2 0 0 0 0 0 0
...................................................................TCTGGTTATCTAGCTGTATGA................................................................................................... 21 1 2 1.00 2 2 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGAAAGTAACCACTT....................................................... 30 3 1 1.00 1 1 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATGAAT................................................................................................. 24 1 2 1.00 2 1 0 0 0 1 0 0
......................................................................................................ATAAAACTAGATAACCGAAAGTA.............................................................. 23 1 2 1.00 2 2 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGTAAGT............................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0
.......................................................................................................TAAAGCTAGATAACCGAGAGTA.............................................................. 22 1 2 1.00 2 2 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAATATC.............................................................................................. 28 3 1 1.00 1 0 1 0 0 0 0 0
.................................................................TCTTTCGTTATCTAGCTGTATG.................................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0
......................................................................................................ATAAAGCTAGATAACCGGAAGT............................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0

Anti-sense strand reads

CTTTCCTAGCCCTGGACCTCAGACCGTTCTCCTTCTGTCTCCGGACACACCCTTCGCTCAACAATAGAAACCAATAGATCGACATACTCACATAACCAGAAGTATTTCGATCTATTGGCTTTCATTTTTGAGGAAGTTCTAGCGGCCCCTCGCACACTCTCACTTTCTGATGTTGGCTCTCTGTCAT

************************************************.((((.(((((.((((.(((((((((((((((.((((((..........)))))).))))))))))))))).)))).)))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116844

epididymis
....................................................................................................AGTATTTCGATCTATTGGTTT.................................................................. 21 1 4 1.00 4 4 0
....................................................................................................AGTATTTCGATCTATTGGTT................................................................... 20 1 4 0.50 2 2 0
.....................................................................................................GTATTTCGATCTATTGGCTT.................................................................. 20 0 2 0.50 1 1 0
....................................................................................................AGTATTTCGATCTATTGGT.................................................................... 19 1 4 0.25 1 1 0
..................................................................................................AAAGTATTTCGATCTATTGGTTT.................................................................. 23 2 4 0.25 1 1 0
.................................................................AGAAGCCAATAGATCGAAATA..................................................................................................... 21 2 8 0.13 1 1 0
....................................................................................................TGTATTTCGATCTATTGGTTT.................................................................. 21 2 18 0.06 1 1 0
....................................................................................................AGTATTTCTATCTATTGGTTT.................................................................. 21 2 20 0.05 1 1 0
..........................................................................................................................................CTAGCGGCCCCGCGCGC................................ 17 2 20 0.05 1 0 1

Generated: 09/01/2015 at 12:26 PM