ID:

mml-mir-9-1

 Coordinate:

chr1:135522511-135522599 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.7 -39.6 -39.5
mature

  1. mml-mir-9-1  chr1:135522562-135522584 -
  2. mml-mir-9-2  chr6:85354058-85354080 -
star

  1. mml-mir-9-1  chr1:135522524-135522545 -
  2. mml-mir-9-2  chr6:85354022-85354043 -

Sense Strand Reads

GGCGGCGGCCGGGAGGCTGCGTGGAAGAGGCGGCGACAGCAGCCAGGAGGCGGGGTTGGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGGTGTGGAGTCTTCATAAAGCTAGATAACCGAAAGTAAAAATAACCCCATACACTGCGCAGAGGGGCCCGGAGGAGGGGGAGGCTTGAGCGAGGGGCTA

**************************************************.(((((((....((((.(((((((((((((((.((((((.((.......)))))))).))))))))))))))).))))...)))))))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116844

epididymis		 SRR116841

prostate		 SRR116845

epididymis		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116839

testes
.................................................................TCTTTGGTTATCTAGCTGTATGA..................................................................................................... 23 0 2 4718.00 9436 9357 6 30 0 17 22 4
........................................................................................................ATAAAGCTAGATAACCGAAAGT............................................................... 22 0 2 4651.50 9303 9256 0 12 0 19 7 9
.........................................................................................................TAAAGCTAGATAACCGAAAGTA.............................................................. 22 0 2 2285.50 4571 4518 0 29 0 11 11 2
........................................................................................................ATAAAGCTAGATAACCGAAAGTA.............................................................. 23 0 2 1494.00 2988 2954 0 12 0 14 3 5
.................................................................TCTTTGGTTATCTAGCTGTATG...................................................................................................... 22 0 2 1399.50 2799 2766 1 19 0 3 10 0
.................................................................TCTTTGGTTATCTAGCTGTAT....................................................................................................... 21 0 2 1183.00 2366 2348 0 8 0 5 3 2
.........................................................................................................TAAAGCTAGATAACCGAAAGTAA............................................................. 23 0 2 1040.00 2080 2042 0 18 0 9 8 3
.........................................................................................................TAAAGCTAGATAACCGAAAGT............................................................... 21 0 2 868.50 1737 1717 0 13 0 6 1 0
.................................................................TCTTTGGTTATCTAGCTGTA........................................................................................................ 20 0 2 537.50 1075 1065 0 7 0 1 2 0
.................................................................TCTTTGGTTATCTAGCTGTATTA..................................................................................................... 23 1 2 373.00 746 742 0 0 0 3 0 1
.................................................................TCTTTGGTTATCTATCTGTATGA..................................................................................................... 23 1 2 313.00 626 623 0 1 0 2 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAGTAT............................................................. 23 1 2 295.00 590 575 0 10 0 5 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGT..................................................................................................... 23 1 2 268.00 536 527 0 6 0 2 1 0
.................................................................TCTTTGGTTATCTAGCTGTATGAATC.................................................................................................. 26 2 2 227.00 454 0 378 0 76 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATGA..................................................................................................... 22 0 2 214.50 429 421 0 0 0 4 3 1
........................................................................................................ATAAAGCTAGATAACCGAAAGTAA............................................................. 24 0 2 203.50 407 400 0 3 0 0 2 2
.................................................................TCTTTGGTTATCTAGCTGTATT...................................................................................................... 22 1 2 199.00 398 396 0 2 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTATGA..................................................................................................... 23 1 2 199.00 398 392 0 5 0 1 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGATC................................................................................................... 25 2 3 178.33 535 0 459 0 76 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAA.................................................................................................... 24 1 2 166.00 332 325 1 4 0 0 1 1
........................................................................................................ATAAAGCTAGATAACCGAAAG................................................................ 21 0 2 110.00 220 219 0 0 0 1 0 0
.................................................................TCTTTGGTTATCTATCTGTATG...................................................................................................... 22 1 2 91.50 183 181 0 2 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGT......................................................................................................... 19 0 2 89.00 178 176 0 0 0 0 2 0
........................................................................................................ATAAAGCTAGATAACCGAAAGTAT............................................................. 24 1 2 78.00 156 156 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAAA................................................................................................... 25 2 2 67.50 135 135 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTATG...................................................................................................... 22 1 2 67.00 134 133 0 0 0 1 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAGA............................................................... 22 1 2 62.00 124 123 0 0 0 1 0 0
.................................................................TCTTTGGTTATCTATCTGTAT....................................................................................................... 21 1 3 56.67 170 169 0 0 0 1 0 0
.................................................................TCTTTGGTTATCTAGCTGTAA....................................................................................................... 21 1 2 53.50 107 107 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTAT....................................................................................................... 21 1 3 51.33 154 154 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTATTA..................................................................................................... 23 2 3 48.00 144 140 0 3 0 0 0 1
........................................................................................................ATAAAGCTAGATAACTGAAAGT............................................................... 22 1 2 37.50 75 75 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAG................................................................ 20 0 2 34.00 68 67 0 0 0 1 0 0
........................................................................................................ATAAAGCTAGATAACCGACAGT............................................................... 22 1 2 33.50 67 67 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTA........................................................................................................ 20 1 3 31.67 95 95 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAGTT.............................................................. 23 1 2 29.00 58 58 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAA................................................................. 20 0 2 28.00 56 55 0 1 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATTA..................................................................................................... 22 1 2 27.00 54 54 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGTA........................................................................................................ 20 1 3 25.33 76 76 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAT.................................................................................................... 24 1 2 23.00 46 45 1 0 0 0 0 0
...................................................................TTTGGTTATCTAGCTGTATGA..................................................................................................... 21 0 2 23.00 46 46 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAGAA.............................................................. 23 1 2 21.00 42 40 0 0 0 2 0 0
.................................................................TCTTTGGTTATCTAGCTGTATTT..................................................................................................... 23 2 4 20.75 83 83 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAGAA.............................................................. 22 1 2 20.50 41 41 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATGAA.................................................................................................... 23 1 2 18.00 36 36 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACTGAAAGTA.............................................................. 22 1 2 18.00 36 36 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATA...................................................................................................... 22 1 2 17.50 35 34 0 1 0 0 0 0
..................................................................CTTTGGTTATCTAGCTTTATGA..................................................................................................... 22 1 2 16.50 33 33 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATG...................................................................................................... 21 0 2 15.50 31 31 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATATC.................................................................................................... 24 3 7 15.14 106 0 103 0 3 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTATT...................................................................................................... 22 2 5 14.60 73 72 0 1 0 0 0 0
.................................................................TCTTTGGTTATGTAGCTGTATGA..................................................................................................... 23 1 2 14.50 29 29 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGACAACCGAAAGT............................................................... 22 1 2 14.00 28 28 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAGTAAA............................................................ 24 0 2 13.50 27 27 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGTATTA..................................................................................................... 23 2 3 13.00 39 39 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATTAA.................................................................................................... 24 2 2 12.50 25 25 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAA.................................................................. 19 0 2 12.00 24 24 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAATT............................................................... 22 1 2 12.00 24 24 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTTTATGA..................................................................................................... 23 2 4 11.50 46 46 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGAGAACCGAAAGT............................................................... 22 1 2 11.50 23 23 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGTATGAA.................................................................................................... 24 2 2 10.00 20 20 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGCAAGTA.............................................................. 22 1 2 9.50 19 19 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTG.......................................................................................................... 18 0 2 9.00 18 17 0 0 0 1 0 0
........................................................................................................ATAAAGCTAGATAACCGACAGTA.............................................................. 23 1 2 8.50 17 17 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAGA............................................................... 21 1 2 8.50 17 17 0 0 0 0 0 0
.................................................................TCTTTGGTTATTTAGCTGTATGA..................................................................................................... 23 1 2 8.50 17 17 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAGAAA............................................................. 23 1 2 8.50 17 17 0 0 0 0 0 0
.................................................................TCTTTGGTTCTCTAGCTGTATGA..................................................................................................... 23 1 2 8.00 16 16 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAAC................................................................................................... 25 2 2 8.00 16 8 7 0 1 0 0 0
........................................................................................................ATAAAGCTAGACAACCGAAAGTA.............................................................. 23 1 2 7.50 15 15 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATCACCGAAAGTA.............................................................. 22 1 2 7.50 15 15 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCTAAAGT............................................................... 22 1 2 7.50 15 15 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACTGAAAGT............................................................... 21 1 3 7.33 22 22 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTATGT..................................................................................................... 23 2 3 7.00 21 20 0 1 0 0 0 0
.........................................................................................................TAAAGCTAGATAACTGAAAGTAA............................................................. 23 1 2 7.00 14 14 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAGTAAAA........................................................... 25 0 2 6.50 13 13 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGTATGT..................................................................................................... 23 2 6 6.50 39 39 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATTAAA................................................................................................... 25 3 2 6.50 13 13 0 0 0 0 0 0
.................................................................TCTTTGTTTATCTAGCTGTATGA..................................................................................................... 23 1 3 6.33 19 19 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAGTAAA............................................................ 25 0 2 6.00 12 12 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAG............................................................................................................. 15 0 7 6.00 42 41 0 1 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAGC............................................................... 22 1 2 6.00 12 12 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTAT....................................................................................................... 20 0 2 6.00 12 12 0 0 0 0 0 0
.................................................................TCTTTGGTTATATAGCTGTATGA..................................................................................................... 23 1 2 6.00 12 11 0 1 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGCAAGT............................................................... 22 1 2 5.50 11 11 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTATGAA.................................................................................................... 24 2 2 5.50 11 11 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACTGAAAGTA.............................................................. 23 1 2 5.50 11 10 0 0 0 1 0 0
........................................................................................................ATAAAGCTAGATAACCGA................................................................... 18 0 2 5.50 11 11 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAAAA.................................................................................................. 26 3 2 5.00 10 10 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATCACCGAAAGTAA............................................................. 23 1 2 5.00 10 10 0 0 0 0 0 0
.................................................................TCTTTTGTTATCTAGCTGTATGA..................................................................................................... 23 1 2 5.00 10 10 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCTAAAGT............................................................... 21 1 2 5.00 10 10 0 0 0 0 0 0
.................................................................TCCTTGGTTATCTAGCTGTATGA..................................................................................................... 23 1 2 5.00 10 10 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGTT.................................................................................................... 24 2 2 4.50 9 8 0 1 0 0 0 0
........................................................................................................ATAAAGCTAGAGAACCGAAAGTA.............................................................. 23 1 2 4.50 9 9 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGCAAGTAA............................................................. 23 1 2 4.50 9 9 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATGACCGAAAGTA.............................................................. 22 1 2 4.50 9 9 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAATTA.............................................................. 23 1 2 4.50 9 9 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAGTATT............................................................ 24 2 2 4.50 9 9 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATAA..................................................................................................... 23 1 2 4.50 9 9 0 0 0 0 0 0
.................................................................TCTTTGGTTATCCAGCTGTATGA..................................................................................................... 23 1 2 4.50 9 9 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAGTAG............................................................. 23 1 2 4.50 9 9 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGACAGTA.............................................................. 22 1 2 4.00 8 8 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAATCGAAAGT............................................................... 22 1 2 4.00 8 8 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTAATC..................................................................................................... 23 3 9 4.00 36 0 32 0 4 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAA................................................................. 19 0 2 4.00 8 8 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTCTGA..................................................................................................... 23 1 2 4.00 8 8 0 0 0 0 0 0
.................................................................TCTTTGGTTATGTAGCTGTAT....................................................................................................... 21 1 2 4.00 8 8 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAA................................................................ 21 1 2 4.00 8 8 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAATTA.............................................................. 22 1 2 4.00 8 8 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGTA.................................................................................................... 24 2 3 3.67 11 11 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGTATT...................................................................................................... 22 2 6 3.50 21 21 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGC..................................................................................................... 23 1 2 3.50 7 7 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAACGTA.............................................................. 22 1 2 3.50 7 7 0 0 0 0 0 0
......................................................................................................AAATAAAGCTAGATAACCGAAAGT............................................................... 24 2 2 3.50 7 7 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAGGA.............................................................. 22 1 2 3.50 7 7 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATGAT.................................................................................................... 23 1 2 3.50 7 6 0 1 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAGAAA............................................................. 24 1 2 3.50 7 7 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAGCA.............................................................. 22 1 2 3.50 7 7 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGCAAGT............................................................... 21 1 2 3.50 7 7 0 0 0 0 0 0
...................................................................TTTGGTTATCTAGCTGTATGAGA................................................................................................... 23 1 2 3.50 7 7 0 0 0 0 0 0
...................................................................TTTGGTTATCTAGCTGTATTA..................................................................................................... 21 1 2 3.50 7 7 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAG.................................................................................................... 24 0 2 3.50 7 7 0 0 0 0 0 0
.................................................................TCTTTGGTTATGTAGCTGTATG...................................................................................................... 22 1 2 3.50 7 7 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCTAAAGTA.............................................................. 22 1 2 3.50 7 7 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAA.................................................................. 18 0 2 3.50 7 7 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATT...................................................................................................... 21 1 2 3.50 7 7 0 0 0 0 0 0
.......................................................................................................AATAAAGCTAGATAACCGAAAGTA.............................................................. 24 1 2 3.50 7 7 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGC............................................................................................................ 16 0 3 3.33 10 9 0 0 0 1 0 0
.................................................................TCTTTGGTTATCTATCTTTATG...................................................................................................... 22 2 4 3.25 13 13 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTAAA...................................................................................................... 22 2 5 3.20 16 16 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAACTGTATGA..................................................................................................... 23 1 2 3.00 6 6 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTCT....................................................................................................... 21 1 2 3.00 6 6 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAG................................................................. 20 1 2 3.00 6 6 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTCTATGA..................................................................................................... 23 1 2 3.00 6 6 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATCACCGAAAGT............................................................... 21 1 2 3.00 6 6 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAATCGAAAGTA.............................................................. 22 1 2 3.00 6 6 0 0 0 0 0 0
.......................................................................................................CATAAAGCTAGATAACCGAAAGT............................................................... 23 0 2 3.00 6 6 0 0 0 0 0 0
.................................................................TCTTTGGTCATCTAGCTGTATGA..................................................................................................... 23 1 2 3.00 6 6 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGCATGA..................................................................................................... 23 1 2 3.00 6 6 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATGAG.................................................................................................... 23 0 2 3.00 6 6 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAGTAG............................................................. 24 1 2 3.00 6 6 0 0 0 0 0 0
........................................................................................................ATAAAGTTAGATAACCGAAAGT............................................................... 22 1 2 3.00 6 6 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAGT................................................................ 21 2 3 2.67 8 8 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATCA..................................................................................................... 23 1 2 2.50 5 5 0 0 0 0 0 0
.................................................................CCTTTGGTTATCTAGCTGTATGA..................................................................................................... 23 1 2 2.50 5 5 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGTTGTATGA..................................................................................................... 23 1 2 2.50 5 5 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATCACCGAAAGTAT............................................................. 23 2 2 2.50 5 5 0 0 0 0 0 0
........................................................................................................ACAAAGCTAGATAACCGAAAGT............................................................... 22 1 2 2.50 5 4 0 0 0 1 0 0
.................................................................TCTCTGGTTATCTAGCTGTATGA..................................................................................................... 23 1 2 2.50 5 5 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATTACCGAAAGTA.............................................................. 22 1 2 2.50 5 5 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAGTAC............................................................. 23 1 2 2.50 5 5 0 0 0 0 0 0
........................................................................................................ATAAATCTAGATAACCGAAAGT............................................................... 22 1 2 2.50 5 5 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAACGT............................................................... 22 1 2 2.50 5 4 0 0 0 0 0 1
..................................................................CTTTGGTTATCTAGCTGTATGT..................................................................................................... 22 1 2 2.50 5 5 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAATCGAAAGT............................................................... 21 1 2 2.50 5 5 0 0 0 0 0 0
.................................................................TCTTTGGTTCTCTAGCTGTATG...................................................................................................... 22 1 2 2.50 5 5 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGCTAACCGAAAGTA.............................................................. 22 1 2 2.50 5 5 0 0 0 0 0 0
...........................................................................................................AAGCTAGATAACCGAAAGTA.............................................................. 20 0 2 2.50 5 5 0 0 0 0 0 0
.................................................................TCTTTGGTTCTCTATCTGTATGA..................................................................................................... 23 2 2 2.50 5 5 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGG..................................................................................................... 23 1 2 2.50 5 5 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAGAAT............................................................. 23 2 2 2.50 5 5 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATGACCGAAAGT............................................................... 21 1 2 2.50 5 5 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAT................................................................ 21 1 2 2.50 5 5 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAGAAT............................................................. 24 2 2 2.50 5 4 0 0 0 1 0 0
.................................................................TCTTTGGTTATCTACCTGTATGA..................................................................................................... 23 1 2 2.50 5 5 0 0 0 0 0 0
........................................................................................................ATAGAGCTAGATAACCGAAAGT............................................................... 22 1 2 2.50 5 5 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGTAA................................................................................................... 25 3 4 2.25 9 9 0 0 0 0 0 0
..................................................................CTTTGGTTATCTATCTGTATGA..................................................................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATGACCGAAAGT............................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTACCTAGCTGTATGA..................................................................................................... 23 1 2 2.00 4 4 0 0 0 0 0 0
........................................................................................................ATAAGGCTAGATAACCGAAAGT............................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTAGGTTATCTAGCTGTATGA..................................................................................................... 23 1 2 2.00 4 4 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGACAGT............................................................... 21 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAC.................................................................................................... 24 1 2 2.00 4 1 1 0 2 0 0 0
.........................................................................................................TAAGGCTAGATAACCGAAAGT............................................................... 21 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAGATC................................................................................................. 27 3 2 2.00 4 0 4 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAGTC.............................................................. 23 1 2 2.00 4 4 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTATGAAA................................................................................................... 24 2 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAAT................................................................................................... 25 1 2 2.00 4 2 2 0 0 0 0 0
.................................................................TCTTTGTTTATCTAGCTGTAT....................................................................................................... 21 1 3 2.00 6 6 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATTAT.................................................................................................... 24 2 2 2.00 4 4 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATGACCGAAAGTAA............................................................. 23 1 2 2.00 4 4 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAGTT.............................................................. 22 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTTTCTAGCTGTATGA..................................................................................................... 23 1 2 2.00 4 4 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAGG............................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTCGGTTATCTAGCTGTATGA..................................................................................................... 23 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGCTTATCTAGCTGTATGA..................................................................................................... 23 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTCTAT....................................................................................................... 21 1 2 2.00 4 4 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAGCCGAAAGT............................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0
........................................................................................................ATAAAGCTATATAACCGAAAGT............................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAATT............................................................... 21 1 2 2.00 4 4 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGACAACCGAAAGTA.............................................................. 22 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTCGCTGTATGA..................................................................................................... 23 1 2 2.00 4 4 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAGTAC............................................................. 24 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTT......................................................................................................... 19 1 3 2.00 6 6 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCAAAAGT............................................................... 22 1 3 2.00 6 6 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTGTA........................................................................................................ 19 0 2 2.00 4 4 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGACAGTAA............................................................. 23 1 2 2.00 4 4 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGCAAGTA.............................................................. 23 1 2 2.00 4 4 0 0 0 0 0 0
.........................................................................................................TAAAGCTGGATAACCGAAAGTA.............................................................. 22 1 2 2.00 4 4 0 0 0 0 0 0
...................................................................TTTGGTTATCTAGCTGTATG...................................................................................................... 20 0 2 2.00 4 4 0 0 0 0 0 0
.........................................................................................................TAAATCTAGATAACCGAAAGTA.............................................................. 22 1 2 2.00 4 4 0 0 0 0 0 0
...............................................................AATCTTTGGTTATCTAGCTGTATG...................................................................................................... 24 1 2 2.00 4 4 0 0 0 0 0 0
........................................................................................................ATAAAGATAGATAACCGAAAGT............................................................... 22 1 2 2.00 4 4 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAGTG.............................................................. 23 1 2 2.00 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTAGAAC.................................................................................................... 24 3 4 1.75 7 7 0 0 0 0 0 0
.................................................................TCTTTGGTTATGTAGCTGTA........................................................................................................ 20 1 4 1.75 7 7 0 0 0 0 0 0
......................................................................................................GTATAAAGCTAGATAACCGAAA................................................................. 22 2 3 1.67 5 5 0 0 0 0 0 0
.......................................................................................................TATAAAGCTAGATAACCGAAAG................................................................ 22 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTTGCTGTAT....................................................................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGGAC................................................................................................... 25 3 2 1.50 3 3 0 0 0 0 0 0
................................................................TTCTTTGGTTATCTAGCTGTA........................................................................................................ 21 1 2 1.50 3 2 0 1 0 0 0 0
.................................................................TCTTTGGTTGTCTAGCTGTATGA..................................................................................................... 23 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGGAAGTA.............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGATAGT............................................................... 21 1 2 1.50 3 2 0 1 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAGC............................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAGTG.............................................................. 22 1 2 1.50 3 3 0 0 0 0 0 0
..................................................................CTTTGGTTATCTAGCTTTATG...................................................................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGATAGTA.............................................................. 22 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATGTAGCTGTATTA..................................................................................................... 23 2 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ATAAATCTAGATAACCGAAAGTA.............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGCTAACCGAAAGTAA............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAGCAA............................................................. 24 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGTTTGA..................................................................................................... 23 2 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAGAGTA.............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAACT............................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAGGT............................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATACCCGAAAGT............................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCTAAAGTA.............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTACGA..................................................................................................... 23 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTAAT...................................................................................................... 22 2 2 1.50 3 2 0 1 0 0 0 0
.........................................................................................................TAAAGCTATATAACCGAAAGTA.............................................................. 22 1 2 1.50 3 3 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCTAAAGTAA............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
.....................................................................TGGTTATCTAGCTGTATGA..................................................................................................... 19 0 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTGTGA..................................................................................................... 23 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTACG...................................................................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAACTA.............................................................. 22 1 2 1.50 3 3 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAAAGTAAT............................................................ 24 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCCTTGGTTATCTAGCTGTAT....................................................................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
.........................................................................................................TAAATCTAGATAACCGAAAGTAA............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGTATGAT.................................................................................................... 24 2 2 1.50 3 3 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATAACCGAACGT............................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ATAAACCTAGATAACCGAAAGT............................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ATAAAGATAGATAACCGAAAGTA.............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTATATGA..................................................................................................... 23 1 2 1.50 3 3 0 0 0 0 0 0
...................................................................TTTGGTTATCTAGCTGTATGAA.................................................................................................... 22 1 2 1.50 3 1 0 0 0 0 2 0
.................................................................TCTTTGGTTATCTAGCTGTAG....................................................................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCAAGCTGTATGA..................................................................................................... 23 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTCGCTGTATG...................................................................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGGTATCTAGCTGTATGA..................................................................................................... 23 1 2 1.50 3 3 0 0 0 0 0 0
.........................................................................................................TAAAGCTGGATAACCGAAAGTAA............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAGAGT............................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACTGAAAG................................................................ 21 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTTGCTGTATGA..................................................................................................... 23 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGACAGTAA............................................................. 24 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCAAAAGTAA............................................................. 24 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ATCAAGCTAGATAACCGAAAGT............................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
.........................................................................................................TAAAACTAGATAACCGAAAGTAA............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
...................................................................................................TCGGTATAAAGCTAGATAACCGAAAGT............................................................... 27 3 2 1.50 3 3 0 0 0 0 0 0
..........................................................................................................AAAGCTAGATAACCGAAAGTAAT............................................................ 23 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCCAGCTGTATG...................................................................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATC...................................................................................................... 22 1 2 1.50 3 2 1 0 0 0 0 0
.................................................................TCTTTGGTTATATAGCTGTATG...................................................................................................... 22 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAGGA.............................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGT......................................................................................................... 19 1 5 1.40 7 7 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTACCTGTAT....................................................................................................... 21 1 3 1.33 4 4 0 0 0 0 0 0
.................................................................TCTTTTGTTATCTATCTGTATGA..................................................................................................... 23 2 3 1.33 4 4 0 0 0 0 0 0
...................................................................TTTGGTTATCTAGCTGTATGATC................................................................................................... 23 2 3 1.33 4 3 1 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGACAGA............................................................... 22 2 3 1.33 4 4 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGCTC................................................................................................... 25 3 4 1.25 5 0 5 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTTTATGAAA................................................................................................... 25 3 5 1.20 6 6 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTGTATGAAA................................................................................................... 25 3 6 1.17 7 7 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTATCTTTAT....................................................................................................... 21 2 20 1.05 21 21 0 0 0 0 0 0
........................................................................................................ATAAAACTAGATAACCGAAAGT............................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0
.........................................................................................................TAAAGCTAGATGACCGAAAGTAT............................................................. 23 2 3 1.00 3 3 0 0 0 0 0 0
...................................................................TCTGGTTATCTAGCTGTATGA..................................................................................................... 21 1 2 1.00 2 2 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAATT.................................................................................................. 26 2 2 1.00 2 0 2 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACAGAAAGTA.............................................................. 23 1 2 1.00 2 2 0 0 0 0 0 0
.................................................................TCTTTGGTTCTCTAGCTGTA........................................................................................................ 20 1 6 1.00 6 6 0 0 0 0 0 0
.................................................................TCTTTGTTTATCTATCTGTATGA..................................................................................................... 23 2 9 1.00 9 9 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTC........................................................................................................ 20 1 2 1.00 2 2 0 0 0 0 0 0
..........................................................................................................AAAGCTAGATAACCGAAAGTA.............................................................. 21 0 2 1.00 2 2 0 0 0 0 0 0
...........................................CAGGAGGCGGGGTTGGTTGTTA............................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................TCTTTCGTTATCTAGCTGTATG...................................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0
.........................................................................................................TAAATCTAGATAACCGAAATTAA............................................................. 23 2 2 1.00 2 2 0 0 0 0 0 0
........................................................................................................ATAAAGCAAGATAACCGAAAGT............................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCCGTAT....................................................................................................... 21 1 2 1.00 2 2 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGAATGA..................................................................................................... 23 1 2 1.00 2 2 0 0 0 0 0 0
........................................................................................................ATAAAGCTAAATAACCGAAAGT............................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGAAGA.................................................................................................. 26 3 2 1.00 2 2 0 0 0 0 0 0
.................................................................TCTTTGGTTATATAGCTGTAT....................................................................................................... 21 1 3 1.00 3 3 0 0 0 0 0 0
........................................................................................................ATCAAGCTAGATAACCGAAAGTA.............................................................. 23 1 2 1.00 2 2 0 0 0 0 0 0
........................................................................................................ATAAAGCTAGATAACCGAAAGAT.............................................................. 23 2 2 1.00 2 2 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTGGCTGTATGA..................................................................................................... 23 1 3 1.00 3 3 0 0 0 0 0 0
.................................................................TCTTTGGTTATTTAGCTGTATG...................................................................................................... 22 1 2 1.00 2 2 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTAGCTGTATGATT................................................................................................... 25 1 2 1.00 2 0 2 0 0 0 0 0
.........................................................................................................TAAATCTAGATAACCGAAAGT............................................................... 21 1 2 1.00 2 2 0 0 0 0 0 0
..................................................................TCTTGGTTATCTAGCTGTATGA..................................................................................................... 22 2 3 1.00 3 3 0 0 0 0 0 0
.................................................................TCATTGGTTATCTAGCTGTATGA..................................................................................................... 23 1 2 1.00 2 2 0 0 0 0 0 0
.................................................................TCTTTGGTTATCTCGCTGTATGAATC.................................................................................................. 26 3 2 1.00 2 0 2 0 0 0 0 0

Anti-sense strand reads

CCGCCGCCGGCCCTCCGACGCACCTTCTCCGCCGCTGTCGTCGGTCCTCCGCCCCAACCAACAATAGAAACCAATAGATCGACATACTCACCACACCTCAGAAGTATTTCGATCTATTGGCTTTCATTTTTATTGGGGTATGTGACGCGTCTCCCCGGGCCTCCTCCCCCTCCGAACTCGCTCCCCGAT

************************************************.(((((((....((((.(((((((((((((((.((((((.((.......)))))))).))))))))))))))).))))...)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex
......................................................................................................AGTATTTCGATCTATTGGTTT.................................................................. 21 1 4 1.00 4 4
.......................................................................................................GTATTTCGATCTATTGGCTT.................................................................. 20 0 2 0.50 1 1
......................................................................................................AGTATTTCGATCTATTGGTT................................................................... 20 1 4 0.50 2 2
......................................................................................................AGTATTTCGATCTATTGGT.................................................................... 19 1 4 0.25 1 1
....................................................................................................AAAGTATTTCGATCTATTGGTTT.................................................................. 23 2 4 0.25 1 1
.................................................................AGAAGCCAATAGATCGAAATA....................................................................................................... 21 2 8 0.13 1 1
......................................................................................................TGTATTTCGATCTATTGGTTT.................................................................. 21 2 18 0.06 1 1
......................................................................................................AGTATTTCTATCTATTGGTTT.................................................................. 21 2 20 0.05 1 1

Generated: 09/01/2015 at 12:05 PM