ID:

mml-mir-7202

 Coordinate:

chr9:123763493-123763548 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.7

Sense Strand Reads

NNNNNNNNNNNNNNNNNNNNNCTCCGGACCGTTCCTCCGTCCTCATCCTCTTGGGTGACATTTGTAGATGTCTCTGTATCTTGACATTTACACGTGTCGCTCGGGACGATGCGTGTCGGGTCCTCTTGCTGGCCCTATCCCGCAGTGAATACCCCC

***********************************((((....((((.(((((((((((((.((((((((((..........)))))))))).))))))))))))).)))).....)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116844

epididymis		 SRR116840

epididymis		 SRR116841

prostate		 SRR116845

epididymis		 SRR116839

testes		 SRR116842

seminal vesicle
..................................................TTGGGTGACATTTGTAGATGT..................................................................................... 21 0 1 13.00 13 6 0 3 3 0 1 0
..................................................TTGGGTGACATTTGTAGATGTATC.................................................................................. 24 1 1 9.00 9 0 7 0 0 2 0 0
..................................................TTGGGTGACATTTGTAGATGA..................................................................................... 21 1 1 4.00 4 3 0 1 0 0 0 0
..................................................TTGGGTGACATTTGTAGATG...................................................................................... 20 0 1 3.00 3 1 0 1 1 0 0 0
....................................................................................CATTTACACGTGTCGCTCGGGAA................................................. 23 1 1 2.00 2 1 0 1 0 0 0 0
..................................................TTGGGTGACATTTGTAGATGTAA................................................................................... 23 2 2 1.00 2 0 0 1 0 0 0 1
....................................................................................CATTTACACGTGTCGCTCGGGA.................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TTGGGTGACATTTTTAGATGT..................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................CATTTACACGTGTCGCTCGGG................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TTGGGTGACATTTGTAGATATC.................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................TTGGGTGACATTTGTAGATTT..................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TTGGGTGGCATTTGTAGATGT..................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
..................................................TTGTGTGACATTTGTAGATGTAA................................................................................... 23 3 16 0.06 1 1 0 0 0 0 0 0

Anti-sense strand reads

NNNNNNNNNNNNNNNNNNNNNGAGGCCTGGCAAGGAGGCAGGAGTAGGAGAACCCACTGTAAACATCTACAGAGACATAGAACTGTAAATGTGCACAGCGAGCCCTGCTACGCACAGCCCAGGAGAACGACCGGGATAGGGCGTCACTTATGGGGG

***********************************((((....((((.(((((((((((((.((((((((((..........)))))))))).))))))))))))).)))).....)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis
..................................................................................................CTAGCCCTGCTACGCGC......................................... 17 2 3 0.33 1 1

Generated: 09/01/2015 at 12:33 PM