ID:

mml-mir-7164

 Coordinate:

chr12:39492366-39492415 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.9 -41.3 -41.3

Sense Strand Reads

CGACTTCTTGGAGAAGTAGCTTTGGCAGACAACATGGCTTGGTCAGGCAGTAGGAAAAGGAGTGGACAGAGGACATTCCCCTGTCGCTTCTTTTTCTTCTGCCGCCAAGGACATTTGTTCTTTTCTGGAAAATACCACTTGATAAGGAGG

***********************************..((((((..(((((.(((((((((((((.((((.(((...))).))))))))))))))))).)))))))))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116840

epididymis		 SRR116845

epididymis		 SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116839

testes		 SRR116844

epididymis
..................................................TAGGAAAAGGAGTGGACAGAG............................................................................... 21 0 1 85.00 85 72 0 7 6 0 0
..................................................TAGGAAAAGGAGTGGACAGAGG.............................................................................. 22 0 1 63.00 63 48 0 11 4 0 0
..................................................TAGGAAAAGGAGTGGACAGA................................................................................ 20 0 1 47.00 47 40 0 6 0 1 0
..................................................TAGGAAAAGGAGTGGACAGAGGATC........................................................................... 25 2 1 32.00 32 0 32 0 0 0 0
..................................................TAGGAAAAGGAGTGGACAGAGA.............................................................................. 22 1 1 19.00 19 12 0 4 3 0 0
..................................................TAGGAAAAGGAGTGGACAGAGGA............................................................................. 23 0 1 16.00 16 9 0 5 2 0 0
..................................................TAGGAAAAGGAGTGGACAGAGT.............................................................................. 22 1 1 10.00 10 8 0 1 1 0 0
..................................................TAGGAAAAGGAGTGGACAGAGGT............................................................................. 23 1 1 8.00 8 8 0 0 0 0 0
..................................................TAGGAAAAGGAGTGGACAGAGATC............................................................................ 24 2 1 8.00 8 0 7 0 0 0 1
..................................................TAGGAAAAGGAGTGGACAGAGAATC........................................................................... 25 3 1 4.00 4 0 4 0 0 0 0
................................................AGTAGGAAAAGGAGTGGACAGA................................................................................ 22 0 1 3.00 3 3 0 0 0 0 0
.................................................GTAGGAAAAGGAGTGGACAGA................................................................................ 21 0 1 3.00 3 2 0 1 0 0 0
..................................................TAGGAAAAGGAGTGGACAGAGGTA............................................................................ 24 2 2 3.00 6 5 0 1 0 0 0
.................................................GTAGGAAAAGGAGTGGACAGAG............................................................................... 22 0 1 3.00 3 2 0 1 0 0 0
.................................................GTAGGAAAAGGAGTGGACAGAGG.............................................................................. 23 0 1 2.00 2 2 0 0 0 0 0
...................................................AGGAAAAGGAGTGGACAGAGGA............................................................................. 22 0 1 2.00 2 2 0 0 0 0 0
................................................AGTAGGAAAAGGAGTGGACAGAG............................................................................... 23 0 1 2.00 2 1 0 1 0 0 0
..................................................TAGGAAAAGGAGTGGACAG................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0
..................................................TAGGAAAAGGAGTGGACAGAGGACATT......................................................................... 27 0 1 2.00 2 0 0 0 1 1 0
..................................................TAGGAAAAGGAGTGGACAGAAA.............................................................................. 22 2 3 2.00 6 6 0 0 0 0 0
..................................................TAGGAAAAGGAGTGGACAGAGAA............................................................................. 23 1 1 2.00 2 1 0 0 1 0 0
..................................................TAGGAAAAGGAGTGGACAGAGGAT............................................................................ 24 1 1 2.00 2 0 0 0 2 0 0
..................................................TAGGAAAAGGAGTGGACAGAA............................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
..................................................TAGGAAAAGGAGTGGACAGAGGAC............................................................................ 24 0 1 2.00 2 1 0 1 0 0 0
...................................................AGGAAAAGGAGTGGACAGAGGAC............................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
............................................AGGCAGTAGGAAAAGGAGTGGAC................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
..................................................TAGGAAAAGGAGTGGACAGAAGA............................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
................................................AGTAGGAAAAGGAGTGGACAGAAAA............................................................................. 25 2 1 1.00 1 1 0 0 0 0 0
..................................................TAGGAAAAGGATTGGACAGAGGATC........................................................................... 25 3 2 1.00 2 0 2 0 0 0 0
..................................................TAGGAAAAGGAGTGGACAGAGGAAATC......................................................................... 27 2 1 1.00 1 0 1 0 0 0 0
................................................AGTAGGAAAAGGAGTGGACAGAT............................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................TAGGAAAAGGAGTGGACAGAGGACAT.......................................................................... 26 0 1 1.00 1 0 0 0 1 0 0
..................................................TAGGAAAAGGAGTGGACAGAGGACATTT........................................................................ 28 1 1 1.00 1 1 0 0 0 0 0
..................................................TAGGAAAAGGAGTGGACACAGGT............................................................................. 23 2 2 1.00 2 2 0 0 0 0 0
..................................................TAGGAAAAGGAGTGGACAGAGGACA........................................................................... 25 0 1 1.00 1 0 0 1 0 0 0
................................................AGTAGGAAAAGGAGTGGACAG................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..................................................TAGGAAAAGGAGTGGACTGAG............................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................TAGGAAAAGGAGTGGACAGAGGAAA........................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
..................................................TAGGAAAAGGAGTGGACAGATG.............................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TAGGAAAAGGAGTGGACAGAGGAATC.......................................................................... 26 3 1 1.00 1 0 1 0 0 0 0
...................................................AGGAAAAGGAGTGGACAGAGGACATC......................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
...................................................AGGAAAAGGAGTGGACAGAGGACAATC........................................................................ 27 1 1 1.00 1 0 1 0 0 0 0
.......................................................AAAGGAGTGGACAGAGGACATT......................................................................... 22 0 1 1.00 1 0 0 0 1 0 0
..................................................TAGGAAAAGGACTGGACAGAGGATC........................................................................... 25 3 2 0.50 1 0 1 0 0 0 0
................................................AGTAGGAAAAGGAGTGGAC................................................................................... 19 0 2 0.50 1 1 0 0 0 0 0
.................................................GTAGGAAAAGGAGTGGACAGG................................................................................ 21 1 2 0.50 1 1 0 0 0 0 0
..................................................TAGGAAAAGGAGTGGACAAAG............................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
..................................................TAGGAAAAGGAGTGGACAGAGGTAT........................................................................... 25 3 3 0.33 1 0 0 0 1 0 0
..................................................TAGGAAAAGGAGTGGACAGAGGTTTT.......................................................................... 26 3 3 0.33 1 0 0 0 1 0 0
..................................................TAGGAAAATGAGTGGACAGAGGATC........................................................................... 25 3 3 0.33 1 0 1 0 0 0 0
...................................................AGGAAAAGGAGTGGACA.................................................................................. 17 0 3 0.33 1 1 0 0 0 0 0
...............................................................................CCTGTCGCTTCTTTTTCTTATC................................................. 22 2 3 0.33 1 0 1 0 0 0 0
..................................................TAGGAAAAGGAGTGGACAA................................................................................. 19 1 6 0.17 1 1 0 0 0 0 0
...................................................AGGAAAAGGAGTGGACAGAGGAATA.......................................................................... 25 3 9 0.11 1 1 0 0 0 0 0
........................................................AAAGAGTGGACAGAGAACATT......................................................................... 21 2 12 0.08 1 1 0 0 0 0 0

Anti-sense strand reads

GCTGAAGAACCTCTTCATCGAAACCGTCTGTTGTACCGAACCAGTCCGTCATCCTTTTCCTCACCTGTCTCCTGTAAGGGGACAGCGAAGAAAAAGAAGACGGCGGTTCCTGTAAACAAGAAAAGACCTTTTATGGTGAACTATTCCTCC

***********************************..((((((..(((((.(((((((((((((.((((.(((...))).))))))))))))))))).)))))))))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:07 PM