ID:

mml-mir-6790

 Coordinate:

chr19:6409576-6409641 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.1 -39.0 -38.8

Sense Strand Reads

ACCCGGGTCGGACCAGATCGGAACCACTGACCATTGCCCATGGCGGCCCTAGTGAGTGTGGATTTGGCGGGGTTCCGGGGTCCCGACGGCGACCTCGGCAACTCCTCACTCACCGTCCGGTTCCTCTTTCCGCAGGGCCCTAGCAGCCAGAATGTCACTGAATACG

************************************((...(((((......((((((.(((.(((.((((((((((.........))).))))))).))).))).))))))))))).))...........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116842

seminal vesicle		 SRR116840

epididymis		 SRR116845

epididymis		 SRR116841

prostate
...................................................GTGAGTGTGGATTTGGCGGGGTTT........................................................................................... 24 1 1 28.00 28 22 5 0 0 1
..............................................................................................TCGGCAACTCCTCACTCACCGT.................................................. 22 0 1 8.00 8 7 1 0 0 0
...................................................GTGAGTGTGGATTTGGCGGGGTTTT.......................................................................................... 25 2 1 7.00 7 4 3 0 0 0
............................................................................................CCTCGGCAACTCCTCACTCACC.................................................... 22 0 1 7.00 7 6 0 1 0 0
...................................................GTGAGTGTGGATTTGGCGGGGTT............................................................................................ 23 0 1 6.00 6 5 1 0 0 0
............................................................................................CCTCGGCAACTCCTCACTCA...................................................... 20 0 1 4.00 4 0 2 2 0 0
............................................................................................CCTCGGCAACTCCTCACTCCC..................................................... 21 1 1 4.00 4 4 0 0 0 0
...................................................GTGAGTGTGGATTTGGCGGGGGTT........................................................................................... 24 2 1 4.00 4 2 2 0 0 0
..............................................................................................TCGGCAACTCCTCACTCACCG................................................... 21 0 1 3.00 3 2 1 0 0 0
............................................................................................CCTCGGCAACTCCTCACTCAC..................................................... 21 0 1 3.00 3 3 0 0 0 0
...................................................GTGAGTGTGGATTTGGCGGGGTTTTT......................................................................................... 26 3 1 3.00 3 0 3 0 0 0
...................................................GTGAGTGTGGATTTGGCGGGGTAT........................................................................................... 24 2 1 2.00 2 2 0 0 0 0
...................................................GTGAGTGTGGATTTGGCGGGGGTTT.......................................................................................... 25 3 1 2.00 2 0 2 0 0 0
...................................................GTGAGTGTGGATTTGGCG................................................................................................. 18 0 1 2.00 2 0 2 0 0 0
...................................................GTGAGTGTGGATTTGGCGGGGT............................................................................................. 22 0 1 2.00 2 2 0 0 0 0
..............................................................................................TCGGCAACTCCTCACTCACCGTCTC............................................... 25 2 1 1.00 1 0 0 0 1 0
..............................................................................................TCGGCAACTCCTCACTCACCA................................................... 21 1 1 1.00 1 0 0 1 0 0
............................................................................................CCTCGGCAACTCCTCACTCACCAATC................................................ 26 3 1 1.00 1 0 0 0 1 0
..............................................................................................TCGGCAACTCCTCACTCACCT................................................... 21 1 1 1.00 1 1 0 0 0 0
.............................................................................................CTCGGCAACTCCTCACTCACCGT.................................................. 23 0 1 1.00 1 1 0 0 0 0
..............................................................................................TCGGCAACTCCTCACTCACCGCGC................................................ 24 2 1 1.00 1 1 0 0 0 0
..............................................................................................TCGGCAACTCCTCCCTCACCGT.................................................. 22 1 1 1.00 1 1 0 0 0 0
...................................................GTGAGTGTGGATTTGGCGGGGG............................................................................................. 22 1 1 1.00 1 0 1 0 0 0
...................................................GTGAGTGTGGATTTGGCGGGGGT............................................................................................ 23 1 1 1.00 1 0 1 0 0 0
..............................................................................................TCGGCAACTCCTCACTCACCGTA................................................. 23 1 1 1.00 1 1 0 0 0 0
............................................................................................CCTCGGCAACTCCTCACTCACCA................................................... 23 1 1 1.00 1 0 1 0 0 0
............................................................................................CCTCGGCAACTCCTCACTCACCATC................................................. 25 1 1 1.00 1 0 0 0 1 0
...................................................GTGAGTGTGGATTTGGCGGGGTTA........................................................................................... 24 1 1 1.00 1 1 0 0 0 0
..............................................................................................TCGGCAACTCCTCACTCACCC................................................... 21 1 1 1.00 1 1 0 0 0 0
............................................................................................CCTCGGCAACTCCTCACTCACCAA.................................................. 24 2 1 1.00 1 1 0 0 0 0
...................................................GTGAGTGTGGATTTGGCGGGGTAA........................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..............................................................................................TCGGCAACTCCTCACTCACCCA.................................................. 22 2 1 1.00 1 1 0 0 0 0
............................................................................................CCTCGGCAACTCCTCACTCGT..................................................... 21 2 2 0.50 1 0 1 0 0 0
...................................................GTGAGTGTGGATTTTGCGGGGGTT........................................................................................... 24 3 3 0.33 1 1 0 0 0 0
...................................................GTGAGTGTGGATTTGGCGTA............................................................................................... 20 2 7 0.14 1 1 0 0 0 0
...................................................GTGAGTGTGGATTTGGCGTT............................................................................................... 20 2 9 0.11 1 1 0 0 0 0
............................................................................................CCTCGGCAACTCCTCACTCTTT.................................................... 22 3 19 0.05 1 1 0 0 0 0

Anti-sense strand reads

TGGGCCCAGCCTGGTCTAGCCTTGGTGACTGGTAACGGGTACCGCCGGGATCACTCACACCTAAACCGCCCCAAGGCCCCAGGGCTGCCGCTGGAGCCGTTGAGGAGTGAGTGGCAGGCCAAGGAGAAAGGCGTCCCGGGATCGTCGGTCTTACAGTGACTTATGC

***********************************((...(((((......((((((.(((.(((.((((((((((.........))).))))))).))).))).))))))))))).))...........************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:15 PM