ID:

mml-mir-676-1

 Coordinate:

chrX:69644176-69644284 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.1

Sense Strand Reads

CTGCTCTTTCCATGAAAATAACCCTTTGCTCCTTCCAAGTTCAACACATGAGACTTCATATCAGATTCTCACCTGAATGCATGACTCTTCAACCTCAGGACTTGCAGAATTAATGGAATGCCGTCCTAAGGTTGTTGAGTTGTGCGTTTCTGGGCATTTCATCTCTATGGAGAAGTACCCATTCCCTCACCCCAAAGACTGAGGTAGAA

**********************************************************************.((((((((((((((((..((((((.(((((..(((............))).))))).))))))..)))))))))))))..)))..***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116840

epididymis		 SRR116843

cortex		 SRR116839

testes		 SRR116845

epididymis		 SRR116844

epididymis
........................................................................................................................CCGTCCTAAGGTTGTTGAGTTT................................................................... 22 1 1 264.00 264 160 48 31 23 2 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGTT.................................................................... 21 0 1 212.00 212 138 29 18 27 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGTTA................................................................... 22 1 1 122.00 122 71 17 22 11 1 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGTTTT.................................................................. 23 1 1 24.00 24 12 9 1 2 0 0 0
.....................................................................................TCTTCAACCTCAGGACTTGCA....................................................................................................... 21 0 1 16.00 16 12 1 3 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGTTAA.................................................................. 23 2 1 14.00 14 11 2 1 0 0 0 0
....................................................................................CTCTTCAACCTCAGGACTTGCA....................................................................................................... 22 0 1 14.00 14 8 2 4 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGT..................................................................... 20 0 1 9.00 9 6 0 0 3 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGTTAT.................................................................. 23 1 1 8.00 8 3 3 2 0 0 0 0
.........................................................................................................................CGTCCTAAGGTTGTTGAGTTT................................................................... 21 1 1 8.00 8 7 0 0 1 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGATTTT................................................................... 22 2 1 7.00 7 0 4 2 1 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTTAGTTT................................................................... 22 2 1 6.00 6 0 4 1 1 0 0 0
.........................................................................................................................CGTCCTAAGGTTGTTGAGTT.................................................................... 20 0 1 6.00 6 3 0 1 2 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGTAA................................................................... 22 2 1 6.00 6 3 1 0 2 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGATTT.................................................................... 21 1 1 5.00 5 1 2 2 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGTTTA.................................................................. 23 2 1 5.00 5 4 1 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTTAGTT.................................................................... 21 1 1 4.00 4 0 3 0 0 1 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGGGTTT................................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGTA.................................................................... 21 1 1 4.00 4 3 0 1 0 0 0 0
.........................................................................................................................CGTCCTAAGGTTGTTGAGTTA................................................................... 21 1 1 4.00 4 3 1 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGATTTA................................................................... 22 2 1 4.00 4 0 2 2 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAG...................................................................... 19 0 1 3.00 3 3 0 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGGGTT.................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGTGTTT................................................................... 22 2 1 2.00 2 1 0 1 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGTTTATC................................................................ 25 3 1 2.00 2 0 0 0 0 0 1 1
........................................................................................................................CCGTCCTAAGGTTGTTGAGTTTTT................................................................. 24 2 1 2.00 2 0 2 0 0 0 0 0
.........................................................................................................................CGTCCTAAGGTTGTTGAGTTAA.................................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGATTTAT.................................................................. 23 2 1 2.00 2 0 1 1 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTT......................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................AACCGTCCTAAGGTTGTTGAGTTA................................................................... 24 3 2 1.00 2 0 1 0 1 0 0 0
........................................................................................................................CCGTCCTACGGTTGTTGAGTTA................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................CCGTCCCAAGGTTGTTGAGTT.................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................TCTTCAACCTCAGGACTTGCATC..................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 1
....................................................................................CTCTTCAACCTCAGGACTTGCAT...................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGTAT................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................CGTCCTAAGGTTGTTGAGTTTT.................................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................................................GTCCTAAGGTTGTTGAGTTT................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGTTTAA................................................................. 24 3 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGTTC................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................AACCGTCCTAAGGTTGTTGAGTA.................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................CCGTCCTACGGTTGTTGAGTTAT.................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................TCTTCAACCTCAGGACTTGCAGAA.................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................CCGTCCTAGGGTTGTTGAGT..................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGATGTTGAGTTT................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGTTATC................................................................. 24 2 1 1.00 1 0 0 0 0 0 1 0
....................................................................................CTCTTCAACCTCCGGACTTGCAT...................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................CGTCCTAAGGTTGTTGGGTT.................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................CCGTCCTACGGTTGTTGAGTT.................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................TCTTCAACCTCAGGACTTGCAA...................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGCTGTTGAGTT.................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGTTAATC................................................................ 25 3 1 1.00 1 0 0 0 0 0 1 0
........................................................................................................................CCGTCCTAAGGTTTTTGAGTTTT.................................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGTTTTTT................................................................ 25 3 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGA..................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGCGTTT................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
....................................................................................CTCTTCAACCTCAGGACTTGCAGAA.................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................TCTTCAACCTCAGTACTTGCA....................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................CGTCCTAAGGTTGTTGGGTTT................................................................... 21 2 3 0.67 2 1 1 0 0 0 0 0
........................................................................................................................CCGTCCTACGGTTGTTGAGTTT................................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0
......................................................................................................................AACCGTCCTAAGGTTGTTGAGTTT................................................................... 24 3 2 0.50 1 0 0 1 0 0 0 0
........................................................................................................................CCGTCCTAAGTTTGTTGAGTT.................................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTTAGTTAA.................................................................. 23 3 2 0.50 1 0 0 1 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGTTTAT................................................................. 24 3 2 0.50 1 0 0 0 0 0 0 1
........................................................................................................................CCGTCCTACGGTTGTTGAGTTTT.................................................................. 23 2 2 0.50 1 0 1 0 0 0 0 0
....................................................................................CTCTTCAACCTCAGGACTTGCAATC.................................................................................................... 25 3 2 0.50 1 0 0 0 0 0 1 0
........................................................................................................................CCGTCCTAAGGTTGTTTAGTAA................................................................... 22 3 3 0.33 1 0 1 0 0 0 0 0
........................................................................................................................CTGTCCTAAGGTTGTTGAG...................................................................... 19 1 4 0.25 1 1 0 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGATTTTG.................................................................. 23 3 4 0.25 1 0 0 0 1 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTGAGAA.................................................................... 21 2 4 0.25 1 1 0 0 0 0 0 0
..........................................................................................................................GTCCTAAGGTTGTTTAGTTT................................................................... 20 2 7 0.14 1 0 0 1 0 0 0 0
........................................................................................................................CCGTCCTAAGTTTGTTGAGTAA................................................................... 22 3 9 0.11 1 0 1 0 0 0 0 0
...........................................................................................................................TCCTAAGGTTGTTGAGCCG................................................................... 19 2 9 0.11 1 1 0 0 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTTAGAA.................................................................... 21 3 17 0.06 1 0 0 1 0 0 0 0
........................................................................................................................CCGTCCTAAGGTTGTTTATTTT................................................................... 22 3 19 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

GACGAGAAAGGTACTTTTATTGGGAAACGAGGAAGGTTCAAGTTGTGTACTCTGAAGTATAGTCTAAGAGTGGACTTACGTACTGAGAAGTTGGAGTCCTGAACGTCTTAATTACCTTACGGCAGGATTCCAACAACTCAACACGCAAAGACCCGTAAAGTAGAGATACCTCTTCATGGGTAAGGGAGTGGGGTTTCTGACTCCATCTT

*****************************************************.((((((((((((((((..((((((.(((((..(((............))).))))).))))))..)))))))))))))..)))..********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis
........................................................................................................................GGCAGGATTCTAACAACGCA..................................................................... 20 2 1 1.00 1 1

Generated: 09/01/2015 at 12:34 PM