ID:

mml-mir-671

 Coordinate:

chr3:190188611-190188728 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-55.4 -54.8 -54.8

Sense Strand Reads

CAGAGGGCTGTTTCTACAATGCTGACTACCTGGCGGCCCGAGCCCGGCTGGCAGGTGAACTGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGGGCCGTAGAGCCAGGGCTGGTGCAGAAGTTCTCCCTGCGGGACTGCAGCCCACGGCTCAGTGAGGAACTCTAC

***************************************************************..((((.((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).)))))))).))))....***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis		 SRR116843

cortex		 SRR116842

seminal vesicle		 SRR116840

epididymis		 SRR116841

prostate		 SRR116844

epididymis
..............................................................................AGGAAGCCCTGGAGGGGCTGGAGGATC................................................................................................................. 27 3 1 30.00 30 29 0 0 0 0 1
.....................................................................................................................TCCGGTTCTCAGGGCTCCACC................................................................................ 21 0 1 14.00 14 0 8 4 1 0 1
.....................................................................................................................TCCGGTTCTCAGGGCTCCACCT............................................................................... 22 0 1 6.00 6 0 3 1 0 2 0
..............................................................................AGGAAGCCCTGGAGGGGCTGGAGATC.................................................................................................................. 26 2 1 6.00 6 6 0 0 0 0 0
..............................................................................AGGAAGCCCTGGAGGGGCTGGAG..................................................................................................................... 23 0 1 5.00 5 0 1 1 1 2 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCA.................................................................................. 19 0 1 5.00 5 0 1 3 1 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCAC................................................................................. 20 0 1 5.00 5 0 5 0 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCACCA............................................................................... 22 1 1 5.00 5 0 4 1 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCACCATC............................................................................. 24 3 3 4.00 12 11 0 0 0 0 1
.....................................................................................................................TCCGGTTCTCAGGGCTCCACT................................................................................ 21 1 1 4.00 4 0 1 2 1 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCAT................................................................................. 20 1 1 4.00 4 0 0 1 3 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCACCTATC............................................................................ 25 2 1 4.00 4 4 0 0 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCACCTAATC........................................................................... 26 3 1 4.00 4 2 0 0 0 0 2
..............................................................................AGGAAGCCCTGGAGGGGCTGGATAT................................................................................................................... 25 2 1 3.00 3 0 0 2 1 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCACCAA.............................................................................. 23 2 1 2.00 2 0 2 0 0 0 0
..............................................................................AGGAAGCCTTGGAGGGGCTGGAGATC.................................................................................................................. 26 3 1 2.00 2 2 0 0 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCACAA............................................................................... 22 2 1 2.00 2 0 1 1 0 0 0
..............................................................................AGGAAGCTCTGGAGGGGCTGGAGATC.................................................................................................................. 26 3 1 2.00 2 2 0 0 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCACA................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCACCAT.............................................................................. 23 2 1 2.00 2 0 0 1 0 1 0
..............................................................................AGGAAGCCCTGGAGGGGCTGGAGT.................................................................................................................... 24 1 1 2.00 2 0 1 0 0 1 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCACCTT.............................................................................. 23 1 1 2.00 2 0 0 2 0 0 0
..............................................................................AGGAAGCCCTGGAGGGGCTGGA...................................................................................................................... 22 0 1 2.00 2 0 1 1 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCAA................................................................................. 20 1 2 1.50 3 0 0 3 0 0 0
..............................................................................AGGAAGCCCTGGAGGGGCTGGAGG.................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTC.................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0
..............................................................................AGGAAGCCCTGGAGGGGCTGGAGGGTC................................................................................................................. 27 3 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................TCCGGGTCTCAGGGCTCCACCG............................................................................... 22 2 1 1.00 1 0 0 0 1 0 0
..............................................................................AGGAAGCCCTGGGGGGGCTGGAGT.................................................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0
..............................................................................AGGAAGCCCTGGAGGGGCTGGAA..................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCACCTTTATC.......................................................................... 27 2 1 1.00 1 1 0 0 0 0 0
..............................................................................AGGAAGCCCTGGAGGGGCTGGAGTTTT................................................................................................................. 27 3 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCTACC................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
..............................................................................AGGAAGCCCTGGAGGGTCTGGAGATC.................................................................................................................. 26 3 1 1.00 1 1 0 0 0 0 0
....................................................................................................................CTCCGGTTCTCAGGGCTCCACT................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCATA................................................................................ 21 2 1 1.00 1 0 0 0 1 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCATTT............................................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..............................................................................AGGAAGCCCTGGAGGGGCTGGAGGCTC................................................................................................................. 27 3 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................TCCGGTTCTCACGGCTCCACA................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCACTT............................................................................... 22 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCACCAAA............................................................................. 24 3 1 1.00 1 0 0 0 0 1 0
....................................................................................................................CTCCGGTTCTCAGGGCTCCATA................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCACCTTT............................................................................. 24 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................TCCGGTTCTCAGTGCTCCACC................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCACCTAT............................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..............................................................................AGGAACCCCTGGAGGGGCTGGAGATC.................................................................................................................. 26 3 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCACCAG.............................................................................. 23 2 2 0.50 1 0 0 1 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCATAA............................................................................... 22 3 4 0.50 2 0 0 2 0 0 0
..............................................................................AGGAAGCCCTGGAGGGGCTGGAAAA................................................................................................................... 25 3 3 0.33 1 0 0 1 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCAAG................................................................................ 21 2 4 0.25 1 0 0 1 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCACAAA.............................................................................. 23 3 4 0.25 1 0 0 1 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTTAA.................................................................................. 19 2 14 0.07 1 0 0 1 0 0 0
.....................................................................................................................TCCGGTTCTCAGGGCTCCAGAA............................................................................... 22 3 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

GTCTCCCGACAAAGATGTTACGACTGATGGACCGCCGGGCTCGGGCCGACCGTCCACTTGACCGTCCGGTCCTTCTCCTCCTTCGGGACCTCCCCGACCTCCACTACCTACAAAAGGAGGCCAAGAGTCCCGAGGTGGAGAAAGCCCGGCATCTCGGTCCCGACCACGTCTTCAAGAGGGACGCCCTGACGTCGGGTGCCGAGTCACTCCTTGAGATG

*****************************************************************..((((.((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).)))))))).))))....*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis
..........................CTAGAGCGCCGGGCTCGGGCCG.......................................................................................................................................................................... 22 3 5 0.40 2 2

Generated: 09/01/2015 at 12:23 PM