ID:

mml-mir-656

 Coordinate:

chr7:164965089-164965166 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-25.9

Sense Strand Reads

GTCACTGAGGAAGAAGCCTCGTCCCTGGAGTCAGCGCTGCTCAGTGGTACCTGAAATAGGTTGTCTGTGAGGTGTTCACTTTCTATATGATGAATATTATACAGTCAACCTCTTTCCGATATCGAATCCCACCTTGGATGCCTTCCTCTTTGCTGCCGACCCCAGGCAGCAGCTGTCT

******************************************..(((((...((((.((((((.(((((.((((((((...((.....)))))))))).))))).)))))).))))...)))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116840

epididymis		 SRR116841

prostate		 SRR116844

epididymis		 SRR116842

seminal vesicle		 SRR116839

testes		 SRR116845

epididymis
............................................................................................AATATTATACAGTCAACCTCT................................................................. 21 0 1 134.00 134 88 32 13 0 1 0 0
.........................................................AGGTTGTCTGTGAGGTGTTCA.................................................................................................... 21 0 1 106.00 106 87 13 6 0 0 0 0
.........................................................AGGTTGTCTGTGAGGTGTTC..................................................................................................... 20 0 1 22.00 22 21 0 1 0 0 0 0
.........................................................AGGTTGTCTGTGAGGTGTTCAT................................................................................................... 22 1 1 12.00 12 10 0 1 0 0 1 0
.........................................................AGGTTGTCTGTGAGGTGTTCT.................................................................................................... 21 1 1 10.00 10 8 2 0 0 0 0 0
............................................................................................AATATTATACAGTCAACCTCTATC.............................................................. 24 1 1 10.00 10 0 0 0 9 0 0 1
.........................................................AGGTTGTCTGTTAGGTGTTCA.................................................................................................... 21 1 1 5.00 5 4 1 0 0 0 0 0
............................................................................................AATATTATACAGTCAACCTCA................................................................. 21 1 2 4.50 9 5 4 0 0 0 0 0
.........................................................AGGTTGTCTGTGAGGTGTTCAAA.................................................................................................. 23 2 1 4.00 4 3 1 0 0 0 0 0
.........................................................AGGTTGTCTGTGAGGTGTTCAA................................................................................................... 22 1 1 3.00 3 2 0 1 0 0 0 0
............................................................................................AATATTATACAGTCAACCTC.................................................................. 20 0 1 2.00 2 1 0 1 0 0 0 0
.........................................................AGGTTGTCTGTGAGTTGTTC..................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0
.........................................................AGGTTGTCTGTGAGGTGTTCATT.................................................................................................. 23 1 1 2.00 2 1 1 0 0 0 0 0
.........................................................AGGTTGTCTGTGAGTTGTTCA.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................AGGTTGTCTGTGAGGTGTTCAAT.................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................AGGTTGTCTGTGAGGTCTTCA.................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0
.........................................................AGGTTGTCTCTGAGGTGTTCA.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................ATTATACAGTCAACCTCT................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................AGGTTGTCTGTGAGGTGTT...................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................AATATTATACAGTCAACCTCTC................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0
............................................................................................AATATTATACATTCAACCTCT................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................AGGTTGTCTGTTAGGTGTTCAT................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.........................................................AGGTTGTCTGTGATGTGTTCA.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................AGGTTGTCTGTGAGGTGTTT..................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0
.........................................................AGGTTGTCTGTGAGGCGTTCA.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................AATATTATACAGTCAACCTCTT................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................AATACTATACAGTCAACCTCT................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0
.........................................................AGGTTGTCTGTGAGGTGTTCAAAA................................................................................................. 24 3 2 0.50 1 0 1 0 0 0 0 0
.........................................................AGGTTGTCTGTGAGGTGTTA..................................................................................................... 20 1 2 0.50 1 0 1 0 0 0 0 0
.........................................................AGGTTGTCTGTGAGGTTTTC..................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0
.........................................................AGGTTGTCTGTGAGTTGTTCAA................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0
.........................................................AGGTTGTCTGTGAGGTGTTTT.................................................................................................... 21 2 5 0.40 2 2 0 0 0 0 0 0
.........................................................AGGTTGTCTGTGAGGTGTTCTTT.................................................................................................. 23 2 3 0.33 1 1 0 0 0 0 0 0
.........................................................AGGTTGTCTTTGAGGTGTTCA.................................................................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0
.........................................................AGGTTGTCTGTGATGTGTT...................................................................................................... 19 1 5 0.20 1 1 0 0 0 0 0 0
............................................................................................AATATTATCCAGTCCACCTCT................................................................. 21 2 6 0.17 1 1 0 0 0 0 0 0

Anti-sense strand reads

CAGTGACTCCTTCTTCGGAGCAGGGACCTCAGTCGCGACGAGTCACCATGGACTTTATCCAACAGACACTCCACAAGTGAAAGATATACTACTTATAATATGTCAGTTGGAGAAAGGCTATAGCTTAGGGTGGAACCTACGGAAGGAGAAACGACGGCTGGGGTCCGTCGTCGACAGA

**************************************************..(((((...((((.((((((.(((((.((((((((...((.....)))))))))).))))).)))))).))))...)))))....****************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:31 PM